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Conserved domains on  [gi|179283161|gb|ACB83564|]
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cytochrome b, partial (mitochondrion) [Bryodema sp. 1 GFJ-2008]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-230 1.85e-157

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 440.76  E-value: 1.85e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00156 126 GQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNI 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00156 206 DKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALV 285

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLIN 230
Cdd:MTH00156 286 MSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-230 1.85e-157

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 440.76  E-value: 1.85e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00156 126 GQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNI 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00156 206 DKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALV 285

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLIN 230
Cdd:MTH00156 286 MSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-229 1.52e-69

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 218.51  E-value: 1.52e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFH-FVLPFIIMAMVMMHLLFLHQTGSNNPTG---- 75
Cdd:COG1290  147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperk 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  76 LNSNIDKIPFHPYFTYKDSITFIIMIMILVMLCLINPymLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIP--NKL 153
Cdd:COG1290  227 KTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 179283161 154 GGVIALLLSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPveEPYIMTGQILTIIYFLYFLI 229
Cdd:COG1290  305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 72-218 1.41e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 154.34  E-value: 1.41e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  72 NPTGLNSNIDKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPN 151
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 179283161 152 KLGGVIALLLSVSILMIMPFYNKNKFRGiQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQI 218
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
123-223 1.17e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.62  E-value: 1.17e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  123 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTW 202
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 179283161  203 IGKRPVEEPYIMTGQILTIIY 223
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 101-204 2.26e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.20  E-value: 2.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  101 IMILVMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSVSILMIMPFY-NKNKFRG 179
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 179283161  180 IQFYPINQIMFWIMVIVVcllTWIG 204
Cdd:TIGR01156 123 PFRRPVATTVFLFGTVVA---LWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-230 1.85e-157

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 440.76  E-value: 1.85e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00156 126 GQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNI 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00156 206 DKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALV 285

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLIN 230
Cdd:MTH00156 286 MSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-241 1.03e-137

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 391.58  E-value: 1.03e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00145 137 GQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDG 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00145 217 DKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALV 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINIHIAKMWDML 240
Cdd:MTH00145 297 MSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNI 376


                 .
gi 179283161 241 I 241
Cdd:MTH00145 377 L 377
CYTB MTH00131
cytochrome b; Provisional
 1-229 1.12e-130

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 373.99  E-value: 1.12e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00131 136 GQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDA 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00131 216 DKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALL 295

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00131 296 FSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00191
cytochrome b; Provisional
 1-229 1.19e-129

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 370.78  E-value: 1.19e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00191 133 GQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDS 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00191 213 DKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALV 292

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00191 293 MSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00074
cytochrome b; Provisional
 1-238 4.96e-129

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 369.78  E-value: 4.96e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00074 137 GQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNP 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00074 217 DKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALL 296

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINIHIAKMWD 238
Cdd:MTH00074 297 ASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00016
cytochrome b; Validated
 1-242 6.89e-129

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 369.39  E-value: 6.89e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00016 137 GQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNS 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00016 217 DKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMF 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINIHIAKMWDML 240
Cdd:MTH00016 297 ASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKL 376


                 ..
gi 179283161 241 IK 242
Cdd:MTH00016 377 LK 378
CYTB MTH00119
cytochrome b; Provisional
 1-229 1.09e-128

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 368.84  E-value: 1.09e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00119 137 GQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNT 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00119 217 DKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALA 296

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00119 297 ASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00100
cytochrome b; Provisional
 1-236 7.06e-126

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 361.65  E-value: 7.06e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00100 136 GQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDS 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00100 216 DKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALL 295

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINIHIAKM 236
Cdd:MTH00100 296 LSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASL 371
CYTB MTH00034
cytochrome b; Validated
 1-229 5.07e-116

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 336.68  E-value: 5.07e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00034 136 GQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNY 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00034 216 DKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALV 295

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00034 296 AAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-242 5.79e-108

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 316.09  E-value: 5.79e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00224 137 GQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADS 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00224 217 ARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALF 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINIHIAKMWDML 240
Cdd:MTH00224 297 AAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDL 376


                 ..
gi 179283161 241 IK 242
Cdd:MTH00224 377 LN 378
CYTB MTH00022
cytochrome b; Validated
 1-231 1.14e-107

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 315.49  E-value: 1.14e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00022 135 GQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSV 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00022 215 DKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMF 294

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINI 231
Cdd:MTH00022 295 FSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 1-238 3.11e-106

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 311.64  E-value: 3.11e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00053 137 GQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDI 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00053 217 DKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALV 296

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 179283161 161 LSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLINIHIAKMWD 238
Cdd:MTH00053 297 FSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLE 374
CYTB MTH00033
cytochrome b; Provisional
 1-229 2.73e-77

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 238.30  E-value: 2.73e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00033 133 GQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLS 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLClINPY---MLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVI 157
Cdd:MTH00033 213 DRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVL 291

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 179283161 158 ALLLSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPV-EEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00033 292 ALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 1-229 1.45e-76

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 235.22  E-value: 1.45e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI 80
Cdd:MTH00086 125 AQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDY 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITfIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALL 160
Cdd:MTH00086 205 DKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALL 283

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 179283161 161 LSVSILMIMPFYNknkFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00086 284 MSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-229 1.52e-69

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 218.51  E-value: 1.52e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFH-FVLPFIIMAMVMMHLLFLHQTGSNNPTG---- 75
Cdd:COG1290  147 DQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperk 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  76 LNSNIDKIPFHPYFTYKDSITFIIMIMILVMLCLINPymLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIP--NKL 153
Cdd:COG1290  227 KTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKL 304

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 179283161 154 GGVIALLLSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTWIGKRPveEPYIMTGQILTIIYFLYFLI 229
Cdd:COG1290  305 GGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 2-229 1.44e-48

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 163.23  E-value: 1.44e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161   2 QMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSNNPTGLNSNI- 80
Cdd:MTH00046 128 QMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYs 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  81 DKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGviaLL 160
Cdd:MTH00046 208 DVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LV 284

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 161 LSVSILMIMPFYNKNkfrGIQFYPI-NQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQILTIIYFLYFLI 229
Cdd:MTH00046 285 LVLSFLFFLWVPTFN---GSSVYSVwRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 72-218 1.41e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 154.34  E-value: 1.41e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  72 NPTGLNSNIDKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDPDNFMPANPLVTPIHIQPEWYFLFAYAILRSIPN 151
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 179283161 152 KLGGVIALLLSVSILMIMPFYNKNKFRGiQFYPINQIMFWIMVIVVCLLTWIGKRPVEEPYIMTGQI 218
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
123-223 1.17e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.62  E-value: 1.17e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  123 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSVSILMIMPFYNKNKFRGIQFYPINQIMFWIMVIVVCLLTW 202
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 179283161  203 IGKRPVEEPYIMTGQILTIIY 223
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-118 2.28e-30

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 110.79  E-value: 2.28e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161    1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHF-VLPFIIMAMVMMHLLFLHQTGSNNPTGLNSN 79
Cdd:pfam13631  51 DLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKN 130

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 179283161   80 IDKIPFHPYFTYKDSITFIIMIMILVMLCLINPYMLGDP 118
Cdd:pfam13631 131 VVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-71 2.75e-28

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 106.30  E-value: 2.75e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 179283161   1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTGSN 71
Cdd:cd00284  130 GQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-69 3.09e-25

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 97.84  E-value: 3.09e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 179283161    1 GQMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLLFLHQTG 69
Cdd:pfam00033 121 GQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 101-204 6.47e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 6.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 101 IMILVMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSVSILMIMPFY-NKNKFRG 179
Cdd:CHL00058  48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                         90       100
                 ....*....|....*....|....*
gi 179283161 180 IQFYPINQIMFWIMVIVVcllTWIG 204
Cdd:CHL00058 123 PFRRPVATTVFLIGTAVA---LWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 101-210 1.06e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.04  E-value: 1.06e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161 101 IMILVMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSVSILMIMPFY-NKNKFRG 179
Cdd:COG5679   49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQN 123

                         90       100       110
                 ....*....|....*....|....*....|.
gi 179283161 180 IQFYPINQIMFWIMVIVVCLLTWIGKRPVEE 210
Cdd:COG5679  124 PFRRPVATAVFLFGTLVTLWLGIGAALPIDK 154
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 101-204 2.26e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.20  E-value: 2.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 179283161  101 IMILVMLCLINPYMLGDPdnfmpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSVSILMIMPFY-NKNKFRG 179
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 179283161  180 IQFYPINQIMFWIMVIVVcllTWIG 204
Cdd:TIGR01156 123 PFRRPVATTVFLFGTVVA---LWLG 144
petB CHL00070
cytochrome b6
 2-73 1.22e-09

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 56.27  E-value: 1.22e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 179283161   2 QMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFH-FVLPFIIMAMVMMHLLFLHQTGSNNP 73
Cdd:CHL00070 142 QIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PRK03735 PRK03735
cytochrome b6; Provisional
 2-73 2.39e-07

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 50.10  E-value: 2.39e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 179283161   2 QMSFWGATVITNLLSAIPYIGMDIVQWVWGGFAVDNATLNRFYTFH-FVLPFIIMAMVMMHLLFLHQTGSNNP 73
Cdd:PRK03735 150 QKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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