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Conserved domains on  [gi|1792550565|gb|QHD52091|]
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SapC family protein [Shewanella algae]

Protein Classification

SapC family protein( domain architecture ID 10538077)

SapC family protein similar to Putrescine export system permease protein SapC, which is the transmembrane subunit (TM) of the periplasmic binding protein (PBP)-dependent ABC transporter complex (SapABCDF) involved in the export of antimicrobial peptides or putrescine, and is responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SapC pfam07277
SapC; This family contains a number of bacterial SapC proteins approximately 250 residues long. ...
 8-226 2.31e-87

SapC; This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.


:

Pssm-ID: 429378  Cd Length: 220  Bit Score: 257.51  E-value: 2.31e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565   8 LNNGAHKALKVTPGIDFSEFEKHHMLPLLVQEFLPAATSFPIIFAKNSQSGEFQPVAITSLKPESNCFIKDN-TWTRRYL 86
Cdd:pfam07277   1 LNSEDHADLRVKPRDGYAFAANVHSVPLVASEFAQAAREYPIVFTKDAETGQFQPVALLGLEPGENLFLDEDgRWLGRYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565  87 PMQCRMQPFAAGDSSQENVLIGIDVNSKHVSEDKGEALFTETGEQTEFLKNRIEFIGNLIEYREITKQFVKTLTSHELLQ 166
Cdd:pfam07277  81 PAYVRRYPFLLAGEDEDQLVLCIDEDSPRVSEEEGEPLFDEDGEPTPYLKRVLEFLEEFEEGRQRTQAFVAALAELGLLE 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565 167 PKTLTVTNKQGEKSNIDGLYIVDEQKLNALSDEVKLEFAKRGVYSPVYAHLCSLNQIDLL 226
Cdd:pfam07277 161 PWELDITLDDGEKYNLNGFYTVDEEKLNALSDEALLELRKSGYLALIYAHLASLGNVRRL 220
 
Name Accession Description Interval E-value
SapC pfam07277
SapC; This family contains a number of bacterial SapC proteins approximately 250 residues long. ...
 8-226 2.31e-87

SapC; This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.


Pssm-ID: 429378  Cd Length: 220  Bit Score: 257.51  E-value: 2.31e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565   8 LNNGAHKALKVTPGIDFSEFEKHHMLPLLVQEFLPAATSFPIIFAKNSQSGEFQPVAITSLKPESNCFIKDN-TWTRRYL 86
Cdd:pfam07277   1 LNSEDHADLRVKPRDGYAFAANVHSVPLVASEFAQAAREYPIVFTKDAETGQFQPVALLGLEPGENLFLDEDgRWLGRYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565  87 PMQCRMQPFAAGDSSQENVLIGIDVNSKHVSEDKGEALFTETGEQTEFLKNRIEFIGNLIEYREITKQFVKTLTSHELLQ 166
Cdd:pfam07277  81 PAYVRRYPFLLAGEDEDQLVLCIDEDSPRVSEEEGEPLFDEDGEPTPYLKRVLEFLEEFEEGRQRTQAFVAALAELGLLE 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565 167 PKTLTVTNKQGEKSNIDGLYIVDEQKLNALSDEVKLEFAKRGVYSPVYAHLCSLNQIDLL 226
Cdd:pfam07277 161 PWELDITLDDGEKYNLNGFYTVDEEKLNALSDEALLELRKSGYLALIYAHLASLGNVRRL 220
 
Name Accession Description Interval E-value
SapC pfam07277
SapC; This family contains a number of bacterial SapC proteins approximately 250 residues long. ...
 8-226 2.31e-87

SapC; This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.


Pssm-ID: 429378  Cd Length: 220  Bit Score: 257.51  E-value: 2.31e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565   8 LNNGAHKALKVTPGIDFSEFEKHHMLPLLVQEFLPAATSFPIIFAKNSQSGEFQPVAITSLKPESNCFIKDN-TWTRRYL 86
Cdd:pfam07277   1 LNSEDHADLRVKPRDGYAFAANVHSVPLVASEFAQAAREYPIVFTKDAETGQFQPVALLGLEPGENLFLDEDgRWLGRYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565  87 PMQCRMQPFAAGDSSQENVLIGIDVNSKHVSEDKGEALFTETGEQTEFLKNRIEFIGNLIEYREITKQFVKTLTSHELLQ 166
Cdd:pfam07277  81 PAYVRRYPFLLAGEDEDQLVLCIDEDSPRVSEEEGEPLFDEDGEPTPYLKRVLEFLEEFEEGRQRTQAFVAALAELGLLE 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1792550565 167 PKTLTVTNKQGEKSNIDGLYIVDEQKLNALSDEVKLEFAKRGVYSPVYAHLCSLNQIDLL 226
Cdd:pfam07277 161 PWELDITLDDGEKYNLNGFYTVDEEKLNALSDEALLELRKSGYLALIYAHLASLGNVRRL 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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