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Conserved domains on  [gi|1791109492|gb|QHD40412|]
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cytochrome b, partial (mitochondrion) [Xenicus gilviventris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-53 7.20e-29

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 104.21  E-value: 7.20e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00119  306 PFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-53 7.20e-29

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 104.21  E-value: 7.20e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00119  306 PFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-52 6.24e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 67.12  E-value: 6.24e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:pfam00032  48 PWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWLGKQPPTGPYTLLGQIATV 99
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-50 5.00e-11

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 53.42  E-value: 5.00e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1791109492   1 PLLHKSKQRTmTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLA 50
Cdd:cd00290    99 PFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-53 2.79e-04

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 35.92  E-value: 2.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVehPFIIIGQLASLT 53
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVT 371
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-53 7.20e-29

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 104.21  E-value: 7.20e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00119  306 PFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358
CYTB MTH00100
cytochrome b; Provisional
 1-53 6.71e-27

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 98.94  E-value: 6.71e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00100  305 PLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASIL 357
CYTB MTH00131
cytochrome b; Provisional
 1-52 9.79e-26

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 95.87  E-value: 9.79e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00131  305 PILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASV 356
CYTB MTH00074
cytochrome b; Provisional
 1-52 2.02e-23

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 89.35  E-value: 2.02e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00074  306 PMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASI 357
CYTB MTH00191
cytochrome b; Provisional
 1-53 3.77e-21

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 83.04  E-value: 3.77e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00191  302 PLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFL 354
CYTB MTH00034
cytochrome b; Validated
 1-52 1.05e-20

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 82.06  E-value: 1.05e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00034  305 PILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASV 356
CYTB MTH00022
cytochrome b; Validated
 1-52 1.85e-18

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 75.89  E-value: 1.85e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00022  304 PLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSF 355
CYTB MTH00053
cytochrome b; Provisional
 1-52 1.80e-17

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 73.20  E-value: 1.80e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00053  306 PYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASI 357
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-52 6.24e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 67.12  E-value: 6.24e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:pfam00032  48 PWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWLGKQPPTGPYTLLGQIATV 99
CYTB MTH00145
cytochrome b; Provisional
 1-52 6.85e-17

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 71.47  E-value: 6.85e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00145  306 PLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTV 357
CYTB MTH00156
cytochrome b; Provisional
 1-53 3.70e-16

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 69.43  E-value: 3.70e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00156  295 PFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTIL 347
CYTB MTH00016
cytochrome b; Validated
 1-48 5.58e-14

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 63.54  E-value: 5.58e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQ 48
Cdd:MTH00016  306 PFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353
CYTB MTH00224
cytochrome b; Provisional
 1-53 5.97e-13

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 60.71  E-value: 5.97e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLASLT 53
Cdd:MTH00224  306 PLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTIL 358
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-50 5.00e-11

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 53.42  E-value: 5.00e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1791109492   1 PLLHKSKQRTmTFRPMSQLLFWILISNLLILTWIGSQPVEHPFIIIGQLA 50
Cdd:cd00290    99 PFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
CYTB MTH00033
cytochrome b; Provisional
 1-52 4.15e-09

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 49.55  E-value: 4.15e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPV-EHPFIIIGQLASL 52
Cdd:MTH00033  304 PILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATI 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-53 2.79e-04

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 35.92  E-value: 2.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1791109492   1 PLLHKSKQRTMTFRPMSQLLFWILISNLLILTWIGSQPVehPFIIIGQLASLT 53
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVT 371
CYTB MTH00046
cytochrome b; Validated
 18-52 6.39e-04

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 34.96  E-value: 6.39e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1791109492  18 QLLFWILISNLLILTWIGSQPVEHPFIIIGQLASL 52
Cdd:MTH00046  309 QVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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