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Conserved domains on  [gi|1790939214|gb|QHD18708|]
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NADH dehydrogenase subunit 6 [Epitonium scalare]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009590)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-161 4.00e-17

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214437  Cd Length: 163  Bit Score: 73.77  E-value: 4.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214   1 MTSVMIVSFTLCMGLALPLLAHPLILGLSIMMLALFNSVMISLFQSSWYGYILFLIFVGGLLVMFAYVAALCPNLLF--E 78
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFgsN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214  79 QSVLFLVLLVFMGGLSYMIYNIYFMDIKIFGDMNFMNYKLMSAFGMELASLNMISVLIGLGLILLINLIAVVKICYFQQG 158
Cdd:MTH00152   81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1790939214 159 SLR 161
Cdd:MTH00152  161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-161 4.00e-17

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 73.77  E-value: 4.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214   1 MTSVMIVSFTLCMGLALPLLAHPLILGLSIMMLALFNSVMISLFQSSWYGYILFLIFVGGLLVMFAYVAALCPNLLF--E 78
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFgsN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214  79 QSVLFLVLLVFMGGLSYMIYNIYFMDIKIFGDMNFMNYKLMSAFGMELASLNMISVLIGLGLILLINLIAVVKICYFQQG 158
Cdd:MTH00152   81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1790939214 159 SLR 161
Cdd:MTH00152  161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-161 4.00e-17

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 73.77  E-value: 4.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214   1 MTSVMIVSFTLCMGLALPLLAHPLILGLSIMMLALFNSVMISLFQSSWYGYILFLIFVGGLLVMFAYVAALCPNLLF--E 78
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFgsN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214  79 QSVLFLVLLVFMGGLSYMIYNIYFMDIKIFGDMNFMNYKLMSAFGMELASLNMISVLIGLGLILLINLIAVVKICYFQQG 158
Cdd:MTH00152   81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 1790939214 159 SLR 161
Cdd:MTH00152  161 SLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-163 2.34e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 55.78  E-value: 2.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214   1 MTSVMIVSFTLCMGLALPLLAHPLILGLSIMMLALFNSVMISLFQSSWYGYILFLIFVGGLLVMFAYVAALCPNLLFEQS 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214  81 VLFLVLLVFMgGLSYMIYNIYFMDikiFGDMNFMNYKLMSAFGMELASLNMISVLIGLGLILLINLIAVVKICYFQQGSL 160
Cdd:MTH00212   81 KYFKGFGMIL-ISLNLYLLLMTLG---SSNFSPMLNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGPL 156


                  ...
gi 1790939214 161 RPF 163
Cdd:MTH00212  157 RPF 159
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 5-164 3.65e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 47.11  E-value: 3.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214   5 MIVSFTLCMGLALPLLAHPLILGLSIMMLALFNSVMISLF-QSSWYGYILFLIFVGGLLVMFAYVAALCPNLLFEQSVLF 83
Cdd:MTH00166    3 MLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMmKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214  84 LVLLVFMgglSYMIYNIYFMDIKIFGDMNFMNYKLMSAFGMELASLNMISVLIGLGLILLINLIAVVKICYFQQGSLRPF 163
Cdd:MTH00166   83 LILFLLM---LLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSK 159


                  .
gi 1790939214 164 K 164
Cdd:MTH00166  160 N 160
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 25-164 8.92e-07

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 46.00  E-value: 8.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214  25 ILGLSIMMLALFNSVMISLFQSSWYGYILFLIFVGGLLVMFAYVAALCPNLLFEQSVLFLVLLVFMGGLSYMIYNIYFMD 104
Cdd:MTH00015   25 TLGINILMMALLLATTMASALSSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLNLGPMAKYTLITLLTLSTTLKLTNPPS 104

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939214 105 IKIFGDMNFMNYklmsafgmeLASLNMISVLIGLGLILLINLIAVVKICYFQQGSLRPFK 164
Cdd:MTH00015  105 PSFFSSTQGNTF---------LYQPENAPLLIFLALILLLTMVIVVKLTRRSSGPLRPFK 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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