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Conserved domains on  [gi|1790939208|gb|QHD18702|]
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NADH dehydrogenase subunit 2 [Epitonium scalare]

Protein Classification

H(+)-translocating NADH:ubiquinone reductase subunit 2( domain architecture ID 11475920)

H(+)-translocating NADH:ubiquinone reductase subunit 2, a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-333 5.14e-75

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 234.01  E-value: 5.14e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   3 SSLPYGYLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSVLS 82
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  83 LFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSiayFENFILGLSVMSVMSAII 162
Cdd:MTH00144   81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLD---LYWLAYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 163 GGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAFKDKFYGGLVL 242
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 243 FLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMYGGLSLGLTFYRGYMSFILISSVMINL 322
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317

                         330
                  ....*....|.
gi 1790939208 323 LGGFGLVMIYF 333
Cdd:MTH00144  318 LGGLLFLLLYL 328
 
Name Accession Description Interval E-value
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-333 5.14e-75

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 234.01  E-value: 5.14e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   3 SSLPYGYLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSVLS 82
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  83 LFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSiayFENFILGLSVMSVMSAII 162
Cdd:MTH00144   81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLD---LYWLAYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 163 GGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAFKDKFYGGLVL 242
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 243 FLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMYGGLSLGLTFYRGYMSFILISSVMINL 322
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317

                         330
                  ....*....|.
gi 1790939208 323 LGGFGLVMIYF 333
Cdd:MTH00144  318 LGGLLFLLLYL 328
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-326 2.42e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.84  E-value: 2.42e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVS-ESAVKYFIVQALGSAFLIVG--------------------N 76
Cdd:COG1007   114 GMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSsEAALKYFLLGALSSGFLLYGisllygatgslnlagiaaalA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  77 LVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIA---YFENFILGLS 153
Cdd:COG1007   194 AGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAfpgLAADWQLLLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 154 VMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMI----HSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDIS 229
Cdd:COG1007   274 VLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAagtpLGVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 230 ------MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYL----SLFMYGGL 299
Cdd:COG1007   354 iedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLrvvkAMYFDEPE 433

                         330       340
                  ....*....|....*....|....*..
gi 1790939208 300 SLGLTFYRGYMSFILISSVMINLLGGF 326
Cdd:COG1007   434 EEAPISAPPGLRVALVIAALLVLLLGI 460
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-283 1.67e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.46  E-value: 1.67e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  25 SLDWFGVWVGLEINLIGFLPMVVYQSG-VSVSESAVKYFIVQALGSAFLIVG-----NLVSVLSLFY------------- 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGislmyNYTGTLSFDElskaltgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  86 -FWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLA-TWQKIAPLFMILFFFSIAYFENFILG-LSVMSVMSAII 162
Cdd:pfam00361  81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQiLLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 163 GGVGGINQTQVRSLLAYSSISHMGWMVFGM----IHSYKIMKFYFIIYLFINLCIFLGLWSINS--SSFKDI----SMAF 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrVHTRNIrdygGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1790939208 233 KDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGS 283
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-296 6.36e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 6.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVS-ESAVKYFIVQALGSAFLIVG-----------NLVSVLSLF- 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFStEAGLKYFILGAFSSGLLLFGisliygftgslNFEDLLLFLs 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  85 --------YFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIA---PLFMILFFFSIAYFENFILGLS 153
Cdd:TIGR01770 194 ngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 154 VMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGW----MVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDI- 228
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEWIe 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1790939208 229 ------SMAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMY 296
Cdd:TIGR01770 354 yisdfaGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV 427
 
Name Accession Description Interval E-value
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-333 5.14e-75

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 234.01  E-value: 5.14e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   3 SSLPYGYLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSVLS 82
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  83 LFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSiayFENFILGLSVMSVMSAII 162
Cdd:MTH00144   81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLD---LYWLAYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 163 GGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAFKDKFYGGLVL 242
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 243 FLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMYGGLSLGLTFYRGYMSFILISSVMINL 322
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317

                         330
                  ....*....|.
gi 1790939208 323 LGGFGLVMIYF 333
Cdd:MTH00144  318 LGGLLFLLLYL 328
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 15-293 3.39e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 186.18  E-value: 3.39e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  15 LVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSVLS--------LFYF 86
Cdd:MTH00112   13 LILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNtgqwditqLTNP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  87 WGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMIlffFSIAYFENFILgLSVMSVMSAIIGGVG 166
Cdd:MTH00112   93 TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL---LMTSNSLNPTL-LLTLAILSTLIGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 167 GINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAF-KDKFYGGLVLFLL 245
Cdd:MTH00112  169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWtKSPTLNTTLMLTL 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1790939208 246 VSLAGLPPLLGFVPKWSVI--LCSMNGALwgFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00112  249 LSLAGLPPLTGFMPKWLILqeLTKQNMTP--TATIMAMLSLLSLFFYLRL 296
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-293 2.01e-54

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 181.13  E-value: 2.01e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   1 MFSSLPYGYLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSV 80
Cdd:MTH00011    1 MMSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  81 L--SLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLfMILFFFSIAYFENFILglsVMSVM 158
Cdd:MTH00011   81 SfpSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPL-SILFFFTSHNILPMMT---SMAAM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 159 SAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAFKDKFYG 238
Cdd:MTH00011  157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1790939208 239 GLVLF-LLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00011  237 SMSLFiMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 15-293 6.12e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 172.41  E-value: 6.12e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  15 LVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLV--------SVLSLFYF 86
Cdd:MTH00070   13 LALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawftgewTIMNMQTP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  87 WGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILfffSIAYFENFILgLSVMSVMSAIIGGVG 166
Cdd:MTH00070   93 LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLI---QISHLLNSNL-LIIMGLLSTLIGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 167 GINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAF-KDKFYGGLVLFLL 245
Cdd:MTH00070  169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWsKNPTLTSMMMLTL 248

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1790939208 246 VSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00070  249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRL 296
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 15-293 6.49e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 169.64  E-value: 6.49e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  15 LVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFL---IVGNLV-----SVLSLFYF 86
Cdd:MTH00105   13 LFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLmmaIIINLMysgqwTITKLTNP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  87 WGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFmILFFFSIAYFENFILGLSVMSVMsaiIGGVG 166
Cdd:MTH00105   93 TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLS-ILYQISPSINPNLLLTLAILSIL---IGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 167 GINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAF-KDKFYGGLVLFLL 245
Cdd:MTH00105  169 GLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWnKTPLMTSLILLTL 248

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1790939208 246 VSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00105  249 LSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRL 296
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 15-312 1.53e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 166.26  E-value: 1.53e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  15 LVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLV--------SVLSLFYF 86
Cdd:MTH00041   13 IILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqawlsgswSINGPLNT 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  87 WGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMIlffFSIAYFENFILgLSVMSVMSAIIGGVG 166
Cdd:MTH00041   93 LSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILL---ISISNLLNSNI-LILCGILSVLVGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 167 GINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAFKDKFYGGLVLFL-L 245
Cdd:MTH00041  169 GLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILsI 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790939208 246 VSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYL------SLFMYGGLSLGLTFYRGYMSF 312
Cdd:MTH00041  249 LSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLrisfntSLTLFPQHSISLFSWRNSGNI 321
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 6-334 3.28e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 165.00  E-value: 3.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   6 PYGYLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSVLSLFY 85
Cdd:MTH00160    5 SSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  86 FWGYA--LVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIAYFenfilglSVMSVMSAIIG 163
Cdd:MTH00160   85 FNNISsmLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFI-------IIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 164 GVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMA-FKDKFYGGLVL 242
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 243 FLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFM------YGGLSLGLTFYRGYMSFILIS 316
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYsslmlnYNKNKWNLKKKKNKFSLILNF 317

                         330
                  ....*....|....*...
gi 1790939208 317 SVMINLLGGFGLVMIYFM 334
Cdd:MTH00160  318 LSFISLFGLILSSLLFLL 335
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 15-335 3.94e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 165.14  E-value: 3.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  15 LVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSvLSLFYFWGYA---- 90
Cdd:MTH00200   13 LGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLN-AWTSGQWGISemlg 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  91 -----LVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPlFMILFFFSIAYFENFILglsVMSVMSAIIGGV 165
Cdd:MTH00200   92 plsetLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAP-FALLIQLAPALNSNILL---LLGLLSVLVGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 166 GGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAF-KDKFYGGLVLFL 244
Cdd:MTH00200  168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKtKNPILSMLLGLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 245 LVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLfMYGGLSLGLTFYRGYMSFILISSVMINLLG 324
Cdd:MTH00200  248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRL-SYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330
                  ....*....|.
gi 1790939208 325 GFGLVMIYFML 335
Cdd:MTH00200  327 LLLLLSILGLP 337
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 14-335 9.57e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 155.60  E-value: 9.57e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  14 VLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLVSVLSLFYFWGYA-LV 92
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLSVvLV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  93 IFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMIlfffsiAYFENFILGLSVMSVMSAIIGGVGGINQTQ 172
Cdd:MTH00197   86 ILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL------AFNSSSFMGLLICSVLSSLIGGIGGMNQSN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 173 VRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSIN-SSSFKDISMAFKDKFYGGLVLFLLVSLAGL 251
Cdd:MTH00197  160 IRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNlSSLNQQYSNPESMSSNLVFLGLSFLSLGGL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 252 PPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMYGGLSLGLTFYRGYMSFILISSVMINLLGGFGLVMI 331
Cdd:MTH00197  240 PPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLLMI 319


                  ....
gi 1790939208 332 YFML 335
Cdd:MTH00197  320 FTMI 323
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 18-293 3.43e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 151.88  E-value: 3.43e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLV--------SVLSLFYFWGY 89
Cdd:MTH00135   16 GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawltgqwDIQQMSHPLPT 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  90 ALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILfffSIAYFENFILglSVMSVMSAIIGGVGGIN 169
Cdd:MTH00135   96 TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALIL---QIAPTNPTLL--ITLGLTSTLVGGWGGLN 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 170 QTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISMAF-KDKFYGGLVLFLLVSL 248
Cdd:MTH00135  171 QTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWtKAPALTALTPLILLSL 250

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1790939208 249 AGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00135  251 GGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-326 2.42e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.84  E-value: 2.42e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVS-ESAVKYFIVQALGSAFLIVG--------------------N 76
Cdd:COG1007   114 GMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSsEAALKYFLLGALSSGFLLYGisllygatgslnlagiaaalA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  77 LVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIA---YFENFILGLS 153
Cdd:COG1007   194 AGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAfpgLAADWQLLLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 154 VMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMI----HSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDIS 229
Cdd:COG1007   274 VLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAagtpLGVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 230 ------MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYL----SLFMYGGL 299
Cdd:COG1007   354 iedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLrvvkAMYFDEPE 433

                         330       340
                  ....*....|....*....|....*..
gi 1790939208 300 SLGLTFYRGYMSFILISSVMINLLGGF 326
Cdd:COG1007   434 EEAPISAPPGLRVALVIAALLVLLLGI 460
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
55-291 1.26e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 109.53  E-value: 1.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  55 SESAVKYFIVQALGSAFLIVG--------------------NLVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMS 114
Cdd:PRK05777  153 LEAAIKYFVLGALASGFLLYGmsllygatgslsfagiakalADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYE 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 115 GMNWFPCMVLATWQKIAPLFMILFFFSIA---YFENFILGLSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFG 191
Cdd:PRK05777  233 GAPTPVTAFLATAPKIAAFAVLLRLLVVAfggLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVG 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 192 MI----HSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDIS------MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKW 261
Cdd:PRK05777  313 LAagtaEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGGEAESisdfagLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKF 392

                         250       260       270
                  ....*....|....*....|....*....|
gi 1790939208 262 SVILCSMNGALWGFSFFMVLGSLLGIFYYL 291
Cdd:PRK05777  393 YVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-283 1.67e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.46  E-value: 1.67e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  25 SLDWFGVWVGLEINLIGFLPMVVYQSG-VSVSESAVKYFIVQALGSAFLIVG-----NLVSVLSLFY------------- 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGislmyNYTGTLSFDElskaltgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  86 -FWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLA-TWQKIAPLFMILFFFSIAYFENFILG-LSVMSVMSAII 162
Cdd:pfam00361  81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQiLLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 163 GGVGGINQTQVRSLLAYSSISHMGWMVFGM----IHSYKIMKFYFIIYLFINLCIFLGLWSINS--SSFKDI----SMAF 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrVHTRNIrdygGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1790939208 233 KDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGS 283
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 18-293 5.74e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.85  E-value: 5.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEI-NLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVG--------NLVSVLSLFYF-- 86
Cdd:MTH00199  109 GSLLLVSSINWLSIYLAIELqTLTLFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGcallygltGETSIQGINSIlt 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  87 --WGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIApLFMILFffSIAYFENFILglsVMSVMSAIIGG 164
Cdd:MTH00199  189 gdVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIG-VFSILV--QIGPVTNVVL---ICAVLSIIYGA 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 165 VGGINQTQVRSLLAYSSISHMGWMVFGM----IHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDI---SMAFKDKFY 237
Cdd:MTH00199  263 IGALNQTKIKRLLAYSGIGHMGFILFGVaigsFESIQASLIYMIIYVIMSICSFSIILSLKLTKGLIVevsGLSRKNPVI 342

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1790939208 238 GGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 18-293 4.70e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 92.40  E-value: 4.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVS-ESAVKYFIVQALGSAF---------------------LIVG 75
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLflfgcallcgttgglhlsyinLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  76 NLVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAplfmilFFFSIAYFENFILGLSVM 155
Cdd:MTH00196   85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG------IFSILVSIGLNVNILLIG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 156 SVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM----IHSYKIMKFYFIIYLFINLCIFLGLWSINSS-----SFK 226
Cdd:MTH00196  159 GLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYknliiEFS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1790939208 227 DISMafKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL 293
Cdd:MTH00196  239 GLSR--RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-296 6.36e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 6.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  18 GTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVS-ESAVKYFIVQALGSAFLIVG-----------NLVSVLSLF- 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFStEAGLKYFILGAFSSGLLLFGisliygftgslNFEDLLLFLs 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  85 --------YFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIA---PLFMILFFFSIAYFENFILGLS 153
Cdd:TIGR01770 194 ngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 154 VMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGW----MVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDI- 228
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEWIe 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1790939208 229 ------SMAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMY 296
Cdd:TIGR01770 354 yisdfaGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV 427
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-296 4.31e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.57  E-value: 4.31e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  14 VLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVG------------------ 75
Cdd:COG0651   115 LLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGvgllygatgtlnmadlaa 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  76 NLVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIAYFENFILGLS-- 153
Cdd:COG0651   195 RLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLGtl 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 154 --VMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM-IHSYKIMK---FYFIIYLFINLCIFLG----LWSINSS 223
Cdd:COG0651   275 llVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgalFHLLNHALAKALLFLAagaiERATGTR 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1790939208 224 SFKDIS-MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMY 296
Cdd:COG0651   355 DLDKLGgLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
55-292 2.11e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 70.85  E-value: 2.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  55 SESAVKYFIVQALGSAFLIVG-------------------NLVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSG 115
Cdd:PRK02504  160 NEAALKYLLIGAASSAIFLYGssllyglsggstqlsaialALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDVYEG 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 116 MNWFPCMVLATWQKIAPLFMILFFFSIAY---FENFILGLSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM 192
Cdd:PRK02504  240 SPTPVVAFLSVGSKAAGFALAIRLLVTAFpsfDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGL 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 193 I----HSYKIMKFYFIIYLFINLCIFLG--LWSINSSSfKDIS----MAFKDKFYG-GLVLFLLvSLAGLPPLLGFVPKW 261
Cdd:PRK02504  320 VagteAGYASMVFYLLAYLFMNLGAFACviLFSLRTGT-DQISdyagLYQKDPLLTlGLSLCLL-SLGGIPPLAGFFGKI 397

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1790939208 262 SVILCSMNGALWGFSFFMVLGSLLGIFYYLS 292
Cdd:PRK02504  398 YLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
ndhB CHL00049
NADH dehydrogenase subunit 2
 89-306 5.55e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.18  E-value: 5.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  89 YALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSI--AYFEN-FILGLSVMSVMSAIIGGV 165
Cdd:CHL00049  217 LIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIpfYFSSNeWHLLLEILAILSMILGNL 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 166 GGINQTQVRSLLAYSSISHMGWMVFGMI-----HSYKIMKFYFIIYLFINL----CIFLGLWSINSSSFKDIS-MAFKDK 235
Cdd:CHL00049  297 IAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsnDGYASMITYMLFYIFMNLgtfaCIVLFGLRTGTDNIRDYAgLYTKDP 376

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1790939208 236 FYG-GLVLFLLvSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSL--FMYGGLSLGLTFY 306
Cdd:CHL00049  377 FLAlSLALCLL-SLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIikLLMTGRNQEITPY 449
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-296 1.14e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 65.29  E-value: 1.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  14 VLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVG------------------ 75
Cdd:PRK08375  114 LLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllygvtgtlnmadlag 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  76 NLVSVLSLFYfwGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFF----FSIAYFENFILG 151
Cdd:PRK08375  194 ALAENPTVVT--AFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIyftvFGGDFRFALGLG 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 152 --LSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLF----INLCIFLGLWSI----N 221
Cdd:PRK08375  272 wlLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalMKGALFLAAGAIevtyG 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1790939208 222 SSSFKDIS-MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMY 296
Cdd:PRK08375  352 TRRLSELSgLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 8-294 2.32e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.41  E-value: 2.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   8 GYLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQS---------GVSVSESAVKYFIVQALGSAFLIVG--- 75
Cdd:MTH00198  190 GFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSqpgshfpspGNTPPESGLKYWILGAMSSGFYLFGcal 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  76 ---------NLVSVLSLFY----------FWGYALVIFSLIMKMGGFPFHFWLPSVMSGMnwfPCMVLATWQKIAPLFMI 136
Cdd:MTH00198  270 yfgftgnegMLGTILSATLettnielrqgSLGYLFITVAILFKLAAAPFHMWTPDVYEGA---PTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 137 LFFFSIAYFENFILGLSVMSVmsaIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM----IHSYKIMKFYFIIYLFINLC 212
Cdd:MTH00198  347 ILLTSLVITSKLLLSVAIISL---VVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtYESLQASWTYAVTYLVSALA 423

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 213 IFLGLWSINSSSFKDISMAFKDKFYGGLVL----------------------FLLVSLAGLPPLLGFVPKWSVILCSMNG 270
Cdd:MTH00198  424 SFTVICTLEEFGTRTPTSRQRDGSFGNYNLvrrlvdltilsrgqpyiafslaIVFLSLAGIPPLLGFLGKWFILVGSIKI 503

                         330       340
                  ....*....|....*....|....
gi 1790939208 271 AlwgfsffmvLGSLLGIFYYLSLF 294
Cdd:MTH00198  504 A---------FSSSLSIYYLVALF 518
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-261 2.34e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 2.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   9 YLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSV-SESAVKYFIVQALGSAFLIVG------------ 75
Cdd:PRK08376  124 YTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTWEaIEAGIKYMFVGSLASSMVLLGiallygqygtln 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  76 ------NLVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLP----SVMSGMNwfPCMVLATWQKIAPLFMILFFFSIAYF 145
Cdd:PRK08376  204 maylavKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPdaypAAPSSIS--AMLLVIKQAGLYALARVLFSIYGPAI 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 146 ENFILG--LSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM------IHSYKIMKFYFI-----IYLFINLC 212
Cdd:PRK08376  282 NLATVGwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLgvglaaLGDPAMASYGEIalaggIYHIVNHA 361

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790939208 213 IF--------------LGLWSINSSSFKDISMAFKDKFYgglvLFLLVSLAGLPPLLGFVPKW 261
Cdd:PRK08376  362 LYkallfltagaviyeTGTRNLNELGGLARTMPKTTIAF----LIGAAAIVGLPPFNGFASKW 420
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
14-296 4.54e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 48.02  E-value: 4.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  14 VLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVG------------------ 75
Cdd:PRK12663  116 LLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGigllygtfgtlnmahiam 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  76 ---------NLVSVLSLFyfwgyaLVIFSliMKMGGFPFhFWLPSVMSGMNwfpcMVLAT-----WQKIAPLFMILFFFS 141
Cdd:PRK12663  196 rlndmgdtaTLTTIALLF------LLAFG--MKAALFPF-MWLPAAYHTPN----TEVAAlfaalLTKVGIYALIRVFTL 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 142 IAYFENFILG--LSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFG---------------MIHSYKIMKF-YF 203
Cdd:PRK12663  263 LFPQERELLHplLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGlalgtpagingaifyLVHDMVVKTAlFL 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 204 IIYLFINLCiflglwsiNSSSFKDIS-MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLG 282
Cdd:PRK12663  343 IAGSLVRLT--------GYRSLQYLGgLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLIT 414

                         330
                  ....*....|....
gi 1790939208 283 SLLGIFYYLSLFMY 296
Cdd:PRK12663  415 SLITMYSLFRIFFL 428
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 39-294 6.35e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.84  E-value: 6.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  39 LIGFlpmvvYQSGVSVSESAVKYFIVQALGSAFLIVG--------------NLVSVLSLFYFWGYALVIFSLIM-----K 99
Cdd:COG1009   150 LIGF-----WYEKPSARRAARKAFLVTRVGDLGLLLGilllgaiagtlnfsELLAAAPTILSSPLLTLILLLLLlgafgK 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 100 MGGFPFHFWLPSVMSGmnwfP----------CMVLATwqkiapLFMIL-FFFSIAYFENFILGLSVMSVMSAIIGGVGGI 168
Cdd:COG1009   225 SAQFPLHFWLPDAMEG----PtpvsallhaaTMVKAG------VYLLArLSPLFALSPVWLTVVAIIGAITALFAALIAL 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 169 NQTQVRSLLAYSSISHMGWMVFGM-IHSYKIMKFYFIIYLFINLCIFLGLWSInsssfkDISMAFKD-KFYGGL------ 240
Cdd:COG1009   295 AQTDIKRVLAYSTVSQLGYMFLALgVGAYVAALFHLLTHAFFKALLFLGAGSV------IHATGTRDiRKMGGLrkkmpi 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 241 --VLFLL--VSLAGLPPLLGFVPKWSVILCSMNGALWGFSFF--MVLGSLLGIFYYLSLF 294
Cdd:COG1009   369 taITFLIgaLSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLavALLGAFLTAFYSFRLF 428
PRK12650 PRK12650
DUF4040 family protein;
91-264 1.64e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.57  E-value: 1.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  91 LVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFfSIAYFENFI--LGLSVMSVMSAIIGGVGGI 168
Cdd:PRK12650  213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRF-SPVFHDVAVwnWLLIIVGMITALMGAVFAV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 169 NQTQVRSLLAYSSISHMGWMV--------FGM----IHSYKIMKFYFIIYLFINLCIF-LGLWSINSSSFKDISMAFKdk 235
Cdd:PRK12650  292 QKTDLKKLTAYSTVSQLGWIVatigvgtpFALtaavVHTLAHALFKSSLFMLIGVVDHqAGTRDIRRLGSLWRRMPFT-- 369

                         170       180
                  ....*....|....*....|....*....
gi 1790939208 236 fyGGLVLFLLVSLAGLPPLLGFVPKWSVI 264
Cdd:PRK12650  370 --FVSVTIAALSMAAVPPLFGFVSKEGML 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 9-300 2.08e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.09  E-value: 2.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   9 YLSVYVLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGNLV-SVLSLFYF- 86
Cdd:TIGR01972 109 YALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGlYFLGGGTFd 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  87 ---------------WGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLA-TWQKIAPLFMILFFFSIA--YFENF 148
Cdd:TIGR01972 189 llellnlplpfgvqtWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTYGFLRFNLPLFpdASLYF 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 149 ILGLSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFIN------LCIFLGLWSINS 222
Cdd:TIGR01972 269 APVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHglitaaLFLLVGVLYERA 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 223 SSfKDISM----AFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWgFSFFMVLGSLLGIFYYLSLF---M 295
Cdd:TIGR01972 349 HT-RDIAKygglANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPV-VAFLAALGIVLAAAYMLTLYkrvF 426


                  ....*
gi 1790939208 296 YGGLS 300
Cdd:TIGR01972 427 FGELS 431
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 90-295 2.46e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 45.73  E-value: 2.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  90 ALVIFSLIMKMGGFPFHFWLPSVMSGMnwfPCMVLATWQ----KIAPLFMILFFFSIAYFENFILG--------LSVMSV 157
Cdd:PRK12667  227 ALALWAFTIKAAIFPNHFWLPDAHPAA---PSPVSAMLSglvvNVGAYAIIRFLYTIFGISPSLIDfraalspiLIILGA 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 158 MSAIIGGVGGINQTQVRSLLAYSSISHMGW--MVFGMIHSYKIMKFYFIIylfINLCIFLGLWSINSSSFKDIS------ 229
Cdd:PRK12667  304 VSAIIGALMMVVQKDVKRLLAYSTISHMGYifMGIGIGTQLGLAAALFHI---INHAIAKSLLFLASGVFIHAAgtrdid 380

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 230 ----MAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFM 295
Cdd:PRK12667  381 elagLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 16-297 5.82e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 5.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  16 VSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSvSESAVKYFIVQALGSAFLIVG------------------NL 77
Cdd:PRK08668  108 LAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKKES-RKASLKYFVLSAIGAYAMLYAifliyaktgtfdfadisqGL 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  78 VSVLSLFYFWGYALVIFSL-IMKMGGFPFHFWLPSVMSGMNW-FPCMVLATWQKIAPLFMILFFFSIAYFENFILGLSVM 155
Cdd:PRK08668  187 INDTSTGFALIVFLFLLAFgVAKAGIFPLHVWAPDAYSEAPQsFSAVLSGQLSKLGAYGFLLVLYVLPGTKLFSEFGTYR 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 156 SV------------MSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM----IHSYKIMKFYFIIYLFINLCIFLGLWS 219
Cdd:PRK08668  267 GVplfnyilawlgnISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLglgtSLGFAGGLFHVFNHALFKGLFFLIFAA 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 220 I----NSSSFKDI-SMAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGiFYYLSLF 294
Cdd:PRK08668  347 ViyrtGTTKISEMgGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGS-FLYVFRP 425


                  ...
gi 1790939208 295 MYG 297
Cdd:PRK08668  426 LAG 428
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 14-192 9.26e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 43.99  E-value: 9.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  14 VLVSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVG-----------NLVSVLS 82
Cdd:PRK08377  116 LLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGvaliygatgtlNMAHIAQ 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  83 L-------FYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLF----MILFFFSIAYFENFILG 151
Cdd:PRK08377  196 LagtidptVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYamarILYLMQNANGWSSVLKL 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1790939208 152 LSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGM 192
Cdd:PRK08377  276 VIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALAL 316
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
3-294 9.50e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.87  E-value: 9.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   3 SSLPYGYLSVYVLVSGTLFSISSlDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAFLIVGN------ 76
Cdd:PRK06277   98 SSGLYVFLMLMGLASVSAIVLAD-DIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIgfllas 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  77 -------------LVSVLSLFYFWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIA----PLFMILFF 139
Cdd:PRK06277  177 tgtlnitdihnalLVNPTSPVIYGGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVlvalMLVIFKLF 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 140 FSIAYFENFILGLSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMI----HSYKIMKFYFIIYLFINLCIFL 215
Cdd:PRK06277  257 GGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLAlgtpLGIVAGIFHAINHVIYKSALFL 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 216 GLWSIN-----SSSFKDISMAFKDKFYGGLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYY 290
Cdd:PRK06277  337 GAGIVSyrtktSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSM 416


                  ....
gi 1790939208 291 LSLF 294
Cdd:PRK06277  417 MKAF 420
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-289 1.04e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.95  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208   8 GYLSVYVL-VSGTLFSISSLDWFGVWVGLEINLIGFLPMVVYQSGVSVSESAVKYFIVQALGSAF--------------L 72
Cdd:PRK12662  111 SFYSAFLLcLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFyligigflyaitgtL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  73 IVGNLVSVLSLFY-----FWGYALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLA-TWQKIAPLFMILFFFSIAYFE 146
Cdd:PRK12662  191 NMGDMFLIIQDLPtnraiQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIIRIVYDVFKAN 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 147 NFILGLS------VMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYL----FINLCIFLG 216
Cdd:PRK12662  271 FVFTTLPfnnvfmILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMV 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1790939208 217 LWSI----NSSSFKDISMAFKDKFYGGLVLFLL-VSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFY 289
Cdd:PRK12662  351 SGSIsyhfGTTKLEDCLNLWKSMPKITLAFVLLsLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIY 428
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
91-278 3.02e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 3.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  91 LVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIayFENFILGLSVMSVMSAI---IGGVGG 167
Cdd:PRK07376  232 LVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPV--FEQFPAVMTVIAWTGAItafLGASIA 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 168 INQTQVRSLLAYSSISHMGWMVFGM-IHSYKIMKFYFIIYLFINLCIFLGLWSI----NSSSFKDISMAFKDKFYGGL-- 240
Cdd:PRK07376  310 LTQNDIKKGLAYSTISQLGYMVMAMgCGAYSAGLFHLMTHAYFKAMLFLGSGSVihgmEEVVGHDPVLAQDMRLMGGLrk 389

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1790939208 241 ------VLFLLVSLA--GLPPLLGFvpkWSV--ILCSM---NGALWGFSFF 278
Cdd:PRK07376  390 ympitaITFLIGCLAisGIPPFAGF---WSKdeILGAAfeaNPALWFVGFL 437
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 91-297 3.05e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.24  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  91 LVIFSLIMKMGGFPFHFWLPSVMSGMnwfPCMVLATW---------QKIAPLFMILFFFSIAYFENFILGLSVMSVmsaI 161
Cdd:PRK07691  214 LFLFVFATKAGLFPLYFWLPGSYYAP---PIAIAALFgalltkvgvYAIARTFTLFFSHDTSFTHYLILILALLTI---I 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 162 IGGVGGINQTQVRSLLAYSSISHMGWMVFG---MIHSYKIMKFYFIIY-LFINLCIFLGLWSI----NSSSFKDISMAFK 233
Cdd:PRK07691  288 FGVIGAVAYFDIKKIIIYNIMIAVGVILVGvamMTESGMIGAIYYLIHdMIVKAALFLLIGIMikitGTTDLKKMGGLIK 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1790939208 234 DKFYGGLVLFL-LVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMYG 297
Cdd:PRK07691  368 RYPVLGWMFFIaALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKG 432
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 58-192 5.97e-04

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 41.61  E-value: 5.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  58 AVKYFIVQALGSAFLivgnLVSVLSLFY----------------------FWGYALVIFSLIMKMGGFPFHFWLP----- 110
Cdd:COG1008   163 AIKFFLYTLAGSLLM----LVAILALYFlagaltfdiaelaaaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPdahve 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 111 ----------SVMSGMNWFPC------MVLATWQKIAPLFMILfffsiayfenfilglsvmSVMSAIIGGVGGINQTQVR 174
Cdd:COG1008   239 aptagsvllaGVLLKMGGYGLlrfalpLFPEASAYFAPLLAAL------------------GVIGIIYGALVALAQTDLK 300

                         170
                  ....*....|....*...
gi 1790939208 175 SLLAYSSISHMGWMVFGM 192
Cdd:COG1008   301 RLIAYSSVSHMGFVLLGI 318
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 71-323 1.00e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 40.24  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  71 FLIVGNLVSVLSLFYFWgyALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIAYFENFIL 150
Cdd:MTH00091   44 FVLQESLGLLFLLFSFG--YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLF 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 151 GLSVMSVMSaiiggvggINQTQVRSLLAYSSISHMGWMVFGMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDISM 230
Cdd:MTH00091  122 GLLICFFQM--------FLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWET 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 231 afkdkfygglvlflLVSLAGLPPLLGFVPKWsvILCSMNGALWGFSFFMVLGSLLGIFYYLSLFMYGGLSLGLTFYRGYM 310
Cdd:MTH00091  194 --------------LLVFMNLPFSVTFFVKI--FSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYN 257

                         250
                  ....*....|...
gi 1790939208 311 SFILISSVMINLL 323
Cdd:MTH00091  258 KGFFFFFLPLMLL 270
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 90-261 2.03e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.55  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  90 ALVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLF----MILFFFSIAyfenfiLGLSVMSVMSAIIGGV 165
Cdd:PRK07234  188 ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFplvrCALDVPGLD------LIVRIFGVGTALLGVL 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 166 GGINQTQVRSLLAYSSISHMGWMVFGMIhsykIMKFYFIIYLFINLCIFLGLWSINSSSFKD-ISMAFKDKFYGGLVLFL 244
Cdd:PRK07234  262 FALLEKDLKRMLAFSTISQLGFILAAPL----VGGLYALAHGLVKSTLFLCAGALPSRNFTElISQMLGIGKWIPLTMAS 337

                         170
                  ....*....|....*..
gi 1790939208 245 LvSLAGLPPLLGFVPKW 261
Cdd:PRK07234  338 F-SIAGFPLLAGFVSKV 353
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 91-286 2.73e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.56  E-value: 2.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208  91 LVIFSLIMKMGGFPFHFWLPSVMSGMNWFPCMVLATWQKIAPLFMILFFFSIayFENFILGLSVMSV---MSAIIGGVGG 167
Cdd:MTH00032  230 LLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPL--FEKAPLTLLIITIfgaLTAFFAATVG 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 168 INQTQVRSLLAYSSISHMGWMVF--GMIHSYKIMKFYFIIYLFINLCIFLGLWSINSSSFKDIS-------MAFKDKFYG 238
Cdd:MTH00032  308 LVQNDLKKVIAYSTCSQLGYMVLiiGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTVDEQdmrkmggLIHSIPFTY 387

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1790939208 239 GLVLFLLVSLAGLPPLLGFVPKWSVILCSMNGALWGFSFFMVLGSLLG 286
Cdd:MTH00032  388 TMMLIGSFSIMGLPYLTGFYSKDLILELTYSGRNMGIPFGSSLLKIQG 435
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-260 9.88e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.64  E-value: 9.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1790939208 152 LSVMSVMSAIIGGVGGINQTQVRSLLAYSSISHMGWMVFGMIHSYKI----MKFYFIIYLFINLCIFLGLWSIN----SS 223
Cdd:PRK12665  276 LMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsgAIYYVAHHITVQTTLFLVVGLIErqagSS 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1790939208 224 SFKDIsmafkdkfyGGL--------VLFLL--VSLAGLPPLLGFVPK 260
Cdd:PRK12665  356 SLRRL---------GGLakaspllaVLFFVpaLNLGGIPPFSGFIGK 393
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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