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Conserved domains on  [gi|1785332833|gb|QGY64432|]
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cytochrome b, partial (mitochondrion) [Calomyscus elburzensis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 595.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00100   14 INHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFIC 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00100   94 LFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00100  174 TLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00100  254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 595.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00100   14 INHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFIC 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00100   94 LFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00100  174 TLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00100  254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-278 2.90e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 321.74  E-value: 2.90e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   3 HSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLF 82
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  83 LHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:COG1290   105 LHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFH-FILPFIITALVLVHLLFLHETGSNNPSGLD----SNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPD 235
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1785332833 236 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGV 278
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGV 307
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-193 1.66e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 269.62  E-value: 1.66e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:cd00284     6 VNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLM 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVD 158
Cdd:cd00284    86 LYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVD 165

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1785332833 159 KATLTRFFAFHFILPFIITALVLVHLLFLHETGSN 193
Cdd:cd00284   166 NATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
5-191 4.03e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 250.38  E-value: 4.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   5 FIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 84
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  85 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATL 162
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1785332833 163 TRFFAFHFILPFIITALVLVHLLFLHETG 191
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 216-278 5.30e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.34  E-value: 5.30e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1785332833 216 ILGVIILIGALMTLvlfSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 595.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00100   14 INHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFIC 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00100   94 LFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00100  174 TLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00100  254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
CYTB MTH00119
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 537.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00119   15 INNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFIC 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00119   95 IYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNP 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00119  175 TLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDP 254

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00119  255 ENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00131
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 529.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00131   14 ANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFIC 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00131   94 IYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNA 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00131  174 TLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDP 253

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00131  254 DNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 291
CYTB MTH00156
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 525.50  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00156    4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00156   84 IYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00156  164 TLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDP 243

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00156  244 ENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281
CYTB MTH00074
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 523.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00074   15 INNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFIC 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00074   95 IYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKA 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00074  175 TLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDP 254

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00074  255 DNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00191
cytochrome b; Provisional
 1-278 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 512.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00191   11 VNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFIC 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00191   91 IYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00191  171 TLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDP 250

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00191  251 ENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 288
CYTB MTH00145
cytochrome b; Provisional
 1-278 1.66e-176

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 491.73  E-value: 1.66e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00145   15 VNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFIC 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00145   95 IYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNA 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00145  175 TLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDP 254

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00145  255 ENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00034
cytochrome b; Validated
 1-278 1.93e-168

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 471.50  E-value: 1.93e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00034   14 LNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFIC 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00034   94 LYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNA 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00034  174 TLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDP 253

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00034  254 ENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 291
CYTB MTH00016
cytochrome b; Validated
 1-278 3.81e-167

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 468.39  E-value: 3.81e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00016   15 MNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFIC 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00016   95 LYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNA 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00016  175 TLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDP 254

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00016  255 ENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGV 292
CYTB MTH00224
cytochrome b; Provisional
 1-278 3.31e-144

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 410.08  E-value: 3.31e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00224   15 LNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00224   95 IYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNA 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00224  175 TLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDP 254

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00224  255 ENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGV 292
CYTB MTH00022
cytochrome b; Validated
 1-278 4.79e-142

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 404.47  E-value: 4.79e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00022   13 VNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLC 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00022   93 LYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00022  173 TLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDP 252

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00022  253 ENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
CYTB MTH00053
cytochrome b; Provisional
 1-278 1.45e-140

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 401.01  E-value: 1.45e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:MTH00053   15 VNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLC 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:MTH00053   95 VYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNA 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDP 240
Cdd:MTH00053  175 TLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDA 254

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1785332833 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00053  255 ENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 292
CYTB MTH00033
cytochrome b; Provisional
 6-278 3.69e-113

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 331.52  E-value: 3.69e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   6 IDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 85
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  86 GRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 165
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 166 FAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFS--PDLLGDPDNY 243
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENF 255

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1785332833 244 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-278 2.90e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 321.74  E-value: 2.90e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   3 HSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLF 82
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  83 LHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKA 160
Cdd:COG1290   105 LHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 161 TLTRFFAFH-FILPFIITALVLVHLLFLHETGSNNPSGLD----SNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPD 235
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1785332833 236 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGV 278
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGV 307
CYTB MTH00086
cytochrome b; Provisional
 6-278 1.37e-104

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 308.41  E-value: 1.37e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   6 IDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 85
Cdd:MTH00086    8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  86 GRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 165
Cdd:MTH00086   88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 166 FAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIgALMTLVLFSPDLLGDPDNYTP 245
Cdd:MTH00086  168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIE 246

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1785332833 246 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:MTH00086  247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-193 1.66e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 269.62  E-value: 1.66e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   1 INHSFIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFIC 80
Cdd:cd00284     6 VNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLM 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  81 LFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVD 158
Cdd:cd00284    86 LYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVD 165

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1785332833 159 KATLTRFFAFHFILPFIITALVLVHLLFLHETGSN 193
Cdd:cd00284   166 NATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
5-191 4.03e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 250.38  E-value: 4.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   5 FIDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 84
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  85 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATL 162
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1785332833 163 TRFFAFHFILPFIITALVLVHLLFLHETG 191
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 6-277 1.84e-79

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 244.51  E-value: 1.84e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833   6 IDLPAPSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 85
Cdd:MTH00046   10 IDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  86 GRGIYYGSYTFMETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 165
Cdd:MTH00046   90 GRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 166 FAFHFILPFIITALVLVHLLFLHETGSNNP-SGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDPDNYT 244
Cdd:MTH00046  170 FSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1785332833 245 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 277
Cdd:MTH00046  250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
75-240 4.58e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.08  E-value: 4.58e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  75 SMFFICLFLHVGRGIYYGSYTFME--TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIW 152
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 153 GGFSVDKATLTRFFAFHF-ILPFIITALVLVHLLFLHETGSNNPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVL 231
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1785332833 232 FSPDLLGDP 240
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 20-176 4.70e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.38  E-value: 4.70e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  20 FGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFME- 98
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  99 -TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 176
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 194-278 8.28e-34

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 120.44  E-value: 8.28e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833 194 NPSGLDSNADKIPFHPYYTIKDILGVIILIGALMTLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 273
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                  ....*
gi 1785332833 274 KLGGV 278
Cdd:cd00290    81 KLLGV 85
petB CHL00070
cytochrome b6
 11-175 3.69e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 120.98  E-value: 3.69e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  11 PSNISSWWNFGSLLGVCLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 90
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785332833  91 YGSYTFME--TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFAF 168
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                  ....*...
gi 1785332833 169 H-FILPFI 175
Cdd:CHL00070  187 HtFVLPLL 194
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
245-278 1.25e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 76.36  E-value: 1.25e-17
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1785332833 245 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGV 34
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 216-278 8.70e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 8.70e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1785332833 216 ILGVIIL--IGALMTLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
petD CHL00058
cytochrome b6/f complex subunit IV
 216-278 8.36e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.47  E-value: 8.36e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1785332833 216 ILGVIILIGALMTLvlfSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:CHL00058   44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 216-278 5.30e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.34  E-value: 5.30e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1785332833 216 ILGVIILIGALMTLvlfSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 278
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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