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Conserved domains on  [gi|1783497330|ref|YP_009720959|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Agapornis lilianae]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-171 2.23e-48

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 154.52  E-value: 2.23e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYALGVALGVGVGFVVFGW---GEGFGAATVDSVGVFVVRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVAL 157
Cdd:MTH00115   81 AWGDWGVVGYVVGFVLVVVVVGVVVGGlwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1783497330 158 ELVRGLSRGAIRAV 171
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-171 2.23e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 154.52  E-value: 2.23e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYALGVALGVGVGFVVFGW---GEGFGAATVDSVGVFVVRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVAL 157
Cdd:MTH00115   81 AWGDWGVVGYVVGFVLVVVVVGVVVGGlwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1783497330 158 ELVRGLSRGAIRAV 171
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-159 3.12e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 52.51  E-value: 3.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  17 LLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSL-AADPFPQVLGGWRTVGYALGVA 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1783497330  96 LGVGVGFVVFGWGEGFGAATVDSVGVFVVRLdfcGAALFYSCGAGLFLVAGWGLLLTLFVALEL 159
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEA---IGELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-171 2.23e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 154.52  E-value: 2.23e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYALGVALGVGVGFVVFGW---GEGFGAATVDSVGVFVVRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVAL 157
Cdd:MTH00115   81 AWGDWGVVGYVVGFVLVVVVVGVVVGGlwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1783497330 158 ELVRGLSRGAIRAV 171
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-171 2.50e-45

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 146.82  E-value: 2.50e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYAL--GVALGVGVGFVVFGWGEGFGAATVDSVGVFVVRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVALE 158
Cdd:MTH00138   81 SWGSWSVLGYVVgyLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 1783497330 159 LVRGLSRGAIRAV 171
Cdd:MTH00138  161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-171 5.60e-40

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 133.05  E-value: 5.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065    1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYALG-VALGVGVGFVVFGWGEGFGAATVDSVGVFVVRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVALEL 159
Cdd:MTH00065   81 AWGSWSVLVYVLFyLLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                         170
                  ....*....|..
gi 1783497330 160 VRGLSRGAIRAV 171
Cdd:MTH00065  161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-162 4.96e-24

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 92.17  E-value: 4.96e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109    2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGG-WRTVGYALGVALGVGVGFVVFGWGEGFGAATV----------DSVGVFVVRLDFCGAALFYSCGAGLFLVAGWGL 149
Cdd:MTH00109   82 TWVSnKVVLGALLLGLLMELLLVLYVLKDDEVEVVFNfnglgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                         170
                  ....*....|...
gi 1783497330 150 LLTLFVALELVRG 162
Cdd:MTH00109  162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-171 4.44e-21

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 84.27  E-value: 4.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214    1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYALGVALGVGVGFVVFGWG-EGFGAATVDSVGvfvvRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVALEL 159
Cdd:MTH00214   81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGwEMLSWMGVDEAN----NLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLEL 156

                         170
                  ....*....|..
gi 1783497330 160 VRGLSRGAIRAV 171
Cdd:MTH00214  157 VRGLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-170 7.48e-14

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 65.31  E-value: 7.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330   1 MAYLVLFLgvgFVLAALLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00045    2 VFYLFLIL---MLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  81 VLGGWRTVGYALGVALGVGVGFVVFGWGEGFGaatvdsvGVFVVRLDFCGAALFYSCGAGLFLVAGWGLLLTLFVALELV 160
Cdd:MTH00045   79 VSNLGEVLVLSLLLSLWVFISFDNFLELSNNN-------WSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVIS 151

                         170
                  ....*....|
gi 1783497330 161 RGLSRGAIRA 170
Cdd:MTH00045  152 FGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-159 3.12e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 52.51  E-value: 3.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783497330  17 LLVASNPSPYYGVVGLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSL-AADPFPQVLGGWRTVGYALGVA 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1783497330  96 LGVGVGFVVFGWGEGFGAATVDSVGVFVVRLdfcGAALFYSCGAGLFLVAGWGLLLTLFVALEL 159
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEA---IGELLFTDYLLPFELASVLLLVALVGAIVL 141
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 3.64e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 39.02  E-value: 3.64e-04
                          10        20
                  ....*....|....*....|....*.
gi 1783497330  49 SFMSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00166   46 FWFSYILFLIFLGGMLVLFIYITSLA 71
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 4-74 5.86e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 35.63  E-value: 5.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1783497330   4 LVLFLGVGFVLAALLVASNPSPYYGVVgLVFGSVVACGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00152    3 LMILLSVCFSLFLLLPLSKQPLSLGLV-LLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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