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Conserved domains on  [gi|1781484214|gb|QGT53998|]
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dsDNA binding protein [Acinetobacter phage vB_AbaM_Konradin]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_DsbA super family cl27831
Transcriptional regulator DsbA; DsbA is a double stranded binding protein found in ...
 1-88 2.39e-23

Transcriptional regulator DsbA; DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices.


The actual alignment was detected with superfamily member PHA02599:

Pssm-ID: 332652  Cd Length: 91  Bit Score: 84.81  E-value: 2.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1781484214  1 MAKEKVEFNAAIHGEQLKHCIKQCSDHKAIIEGANEAIREIRKTACEELGVSGKDFNQMLRIFHKDEREKLESENEELLE 80
Cdd:PHA02599   4 AKKEKVEFNPAVHGERLAQLIKEASDHKTQIEAYGEMIKDIKDRAKTELGVDGKMFNKLFKLYHKQEREQFEAENDEVVE 83


                 ....*...
gi 1781484214 81 KYDAVFRK 88
Cdd:PHA02599  84 LYDTIFKA 91
 
Name Accession Description Interval E-value
dsbA PHA02599
double-stranded DNA binding protein; Provisional
 1-88 2.39e-23

double-stranded DNA binding protein; Provisional


Pssm-ID: 222903  Cd Length: 91  Bit Score: 84.81  E-value: 2.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1781484214  1 MAKEKVEFNAAIHGEQLKHCIKQCSDHKAIIEGANEAIREIRKTACEELGVSGKDFNQMLRIFHKDEREKLESENEELLE 80
Cdd:PHA02599   4 AKKEKVEFNPAVHGERLAQLIKEASDHKTQIEAYGEMIKDIKDRAKTELGVDGKMFNKLFKLYHKQEREQFEAENDEVVE 83


                 ....*...
gi 1781484214 81 KYDAVFRK 88
Cdd:PHA02599  84 LYDTIFKA 91
Phage_DsbA pfam11126
Transcriptional regulator DsbA; DsbA is a double stranded binding protein found in ...
 21-86 2.42e-11

Transcriptional regulator DsbA; DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices.


Pssm-ID: 288031  Cd Length: 67  Bit Score: 53.83  E-value: 2.42e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1781484214 21 IKQCSDHKAIIEGANEAIREIRKTACEELGVSGKDFNQMLRIFHKDEREKLESENEELLEKYDAVF 86
Cdd:pfam11126  1 IKEASAHKLKIDGENDLIKDIAIRAKDEFEIDGADFNKLLALYHKDNRDEEEAETEEIDELYDKLF 66
 
Name Accession Description Interval E-value
dsbA PHA02599
double-stranded DNA binding protein; Provisional
 1-88 2.39e-23

double-stranded DNA binding protein; Provisional


Pssm-ID: 222903  Cd Length: 91  Bit Score: 84.81  E-value: 2.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1781484214  1 MAKEKVEFNAAIHGEQLKHCIKQCSDHKAIIEGANEAIREIRKTACEELGVSGKDFNQMLRIFHKDEREKLESENEELLE 80
Cdd:PHA02599   4 AKKEKVEFNPAVHGERLAQLIKEASDHKTQIEAYGEMIKDIKDRAKTELGVDGKMFNKLFKLYHKQEREQFEAENDEVVE 83


                 ....*...
gi 1781484214 81 KYDAVFRK 88
Cdd:PHA02599  84 LYDTIFKA 91
Phage_DsbA pfam11126
Transcriptional regulator DsbA; DsbA is a double stranded binding protein found in ...
 21-86 2.42e-11

Transcriptional regulator DsbA; DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices.


Pssm-ID: 288031  Cd Length: 67  Bit Score: 53.83  E-value: 2.42e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1781484214 21 IKQCSDHKAIIEGANEAIREIRKTACEELGVSGKDFNQMLRIFHKDEREKLESENEELLEKYDAVF 86
Cdd:pfam11126  1 IKEASAHKLKIDGENDLIKDIAIRAKDEFEIDGADFNKLLALYHKDNRDEEEAETEEIDELYDKLF 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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