glycine betaine/carnitine/choline ABC transporter substrate-binding and permease protein [Lentilactobacillus buchneri subsp. silagei]
Protein Classification
ABC transporter permease/substrate-binding protein( domain architecture ID 10787289)
ABC transporter permease/substrate-binding protein containing transmembrane (TM) and type 2 periplasmic-binding protein (PBP2) components of an ABC transporter involved in the transport of one or more from a variety of substrates including glycine betaine and choline
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||
| PBP2_ChoS | cd13610 | Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; ... |
236-501 | 1.86e-147 | |||||
Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. : Pssm-ID: 270328 Cd Length: 264 Bit Score: 422.77 E-value: 1.86e-147
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| OpuBB | COG1174 | ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
1-202 | 3.80e-70 | |||||
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; : Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 223.01 E-value: 3.80e-70
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| Name | Accession | Description | Interval | E-value | |||||
| PBP2_ChoS | cd13610 | Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; ... |
236-501 | 1.86e-147 | |||||
Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270328 Cd Length: 264 Bit Score: 422.77 E-value: 1.86e-147
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| OsmF | COG1732 | Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system ... |
208-503 | 4.26e-117 | |||||
Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 441338 [Multi-domain] Cd Length: 294 Bit Score: 346.36 E-value: 4.26e-117
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| OpuBB | COG1174 | ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
1-202 | 3.80e-70 | |||||
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 223.01 E-value: 3.80e-70
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| OpuAC | pfam04069 | Substrate binding domain of ABC-type glycine betaine transport system; Part of a high affinity ... |
236-502 | 7.90e-56 | |||||
Substrate binding domain of ABC-type glycine betaine transport system; Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA). Pssm-ID: 397954 [Multi-domain] Cd Length: 257 Bit Score: 187.15 E-value: 7.90e-56
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| TM_PBP2 | cd06261 | Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
20-194 | 6.73e-17 | |||||
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others. Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.86 E-value: 6.73e-17
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| PRK10952 | PRK10952 | proline/glycine betaine ABC transporter permease ProW; |
28-143 | 5.29e-16 | |||||
proline/glycine betaine ABC transporter permease ProW; Pssm-ID: 236805 Cd Length: 355 Bit Score: 79.37 E-value: 5.29e-16
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| BPD_transp_1 | pfam00528 | Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
37-204 | 1.67e-14 | |||||
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 71.56 E-value: 1.67e-14
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| PhnE | TIGR01097 | phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
16-149 | 5.55e-08 | |||||
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions] Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 53.70 E-value: 5.55e-08
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| Name | Accession | Description | Interval | E-value | |||||
| PBP2_ChoS | cd13610 | Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; ... |
236-501 | 1.86e-147 | |||||
Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270328 Cd Length: 264 Bit Score: 422.77 E-value: 1.86e-147
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| OsmF | COG1732 | Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system ... |
208-503 | 4.26e-117 | |||||
Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 441338 [Multi-domain] Cd Length: 294 Bit Score: 346.36 E-value: 4.26e-117
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| PBP2_osmoprotectants | cd13528 | Substrate-binding domain of osmoregulatory ABC-type transporters; the type 2 ... |
236-501 | 6.45e-106 | |||||
Substrate-binding domain of osmoregulatory ABC-type transporters; the type 2 periplasmic-binding protein fold; This family represents the periplasmic substrate-binding component of ABC transport systems that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, bacteria and archaea accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270246 [Multi-domain] Cd Length: 264 Bit Score: 316.85 E-value: 6.45e-106
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| PBP2_Opu_like_1 | cd13609 | Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 ... |
236-501 | 7.46e-89 | |||||
Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold; This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270327 Cd Length: 263 Bit Score: 272.94 E-value: 7.46e-89
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| PBP2_AfProX_like | cd13607 | Substrate-binding protein ProX of ABC-type osmoregulatory transporter from Archaeoglobus ... |
236-500 | 1.23e-78 | |||||
Substrate-binding protein ProX of ABC-type osmoregulatory transporter from Archaeoglobus fulgidus and its related proteins; the type 2 periplasmic-binding protein fold; This subfamily includes the periplasmic substrate-binding protein ProX from the hyperthermophilic archaeon Archaeoglobus fulgidus and its related proteins. AfProX is involved in uptake of compatible solutes such as the trimethylammonium compound glycine betaine and the dimethylammonium compound proline betaine, but the relative substrate preference is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. AfProX belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270325 Cd Length: 261 Bit Score: 246.73 E-value: 1.23e-78
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| PBP2_Opu_like_2 | cd13613 | Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 ... |
236-501 | 6.57e-75 | |||||
Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold; This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270331 Cd Length: 264 Bit Score: 237.24 E-value: 6.57e-75
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| PBP2_ProWX | cd13612 | Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; ... |
236-505 | 8.81e-73 | |||||
Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein ProWX of Helicobacter pylori is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ProWX belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270330 Cd Length: 267 Bit Score: 231.74 E-value: 8.81e-73
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| PBP2_OpuCC_like | cd13608 | Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; ... |
236-501 | 2.38e-72 | |||||
Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold; This subfamily includes the periplasmic substrate-binding protein OpuCC of the ABC transporter OpuC (where Opu is osmoprotectant uptake), which can recognize a broad spectrum of compatible solutes, and its paralog OpuBC that can solely bind choline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270326 Cd Length: 265 Bit Score: 230.59 E-value: 2.38e-72
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| PBP2_QAT_like | cd13614 | Substrate-binding domain of quaternary amine ABC-type transporter; the type 2 ... |
236-501 | 3.05e-71 | |||||
Substrate-binding domain of quaternary amine ABC-type transporter; the type 2 periplasmic-binding protein fold; This group includes the periplasmic substrate-binding component of a putative quaternary amine ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270332 Cd Length: 264 Bit Score: 227.65 E-value: 3.05e-71
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| OpuBB | COG1174 | ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
1-202 | 3.80e-70 | |||||
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 223.01 E-value: 3.80e-70
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| PBP2_ProWY | cd13615 | Substrate-binding domain of ABC-type osmoregulated transporter; the type 2 periplasmic-binding ... |
236-500 | 7.63e-66 | |||||
Substrate-binding domain of ABC-type osmoregulated transporter; the type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein ProWY of Streptococcus thermophilus is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ProWY belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270333 Cd Length: 262 Bit Score: 213.46 E-value: 7.63e-66
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| OpuAC | pfam04069 | Substrate binding domain of ABC-type glycine betaine transport system; Part of a high affinity ... |
236-502 | 7.90e-56 | |||||
Substrate binding domain of ABC-type glycine betaine transport system; Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA). Pssm-ID: 397954 [Multi-domain] Cd Length: 257 Bit Score: 187.15 E-value: 7.90e-56
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| PBP2_YehZ | cd13611 | Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 ... |
266-501 | 3.15e-53 | |||||
Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270329 Cd Length: 267 Bit Score: 180.86 E-value: 3.15e-53
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| PBP2_ProX_like | cd13606 | Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related ... |
236-501 | 4.12e-51 | |||||
Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold; This group includes periplasmic substrate-binding component of ABC transport systems from gram-negative and -positive bacteria that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270324 Cd Length: 260 Bit Score: 175.06 E-value: 4.12e-51
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| PBP2_OsmF | cd13616 | Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 ... |
236-500 | 1.51e-39 | |||||
Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold; Osmoprotectant binding lipoprotein OsmF of an ABC transporter (YehZYXW) from Escherichia coli is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. OsmF belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270334 Cd Length: 274 Bit Score: 144.40 E-value: 1.51e-39
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| TauC | COG0600 | ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
20-149 | 1.40e-24 | |||||
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 102.53 E-value: 1.40e-24
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| ProW | COG4176 | ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
28-153 | 9.43e-23 | |||||
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Pssm-ID: 443335 Cd Length: 275 Bit Score: 97.86 E-value: 9.43e-23
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| TM_PBP2 | cd06261 | Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
20-194 | 6.73e-17 | |||||
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others. Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.86 E-value: 6.73e-17
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| PRK10952 | PRK10952 | proline/glycine betaine ABC transporter permease ProW; |
28-143 | 5.29e-16 | |||||
proline/glycine betaine ABC transporter permease ProW; Pssm-ID: 236805 Cd Length: 355 Bit Score: 79.37 E-value: 5.29e-16
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| BPD_transp_1 | pfam00528 | Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
37-204 | 1.67e-14 | |||||
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 71.56 E-value: 1.67e-14
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| FbpB | COG1178 | ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
14-153 | 8.81e-13 | |||||
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 70.58 E-value: 8.81e-13
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| PRK10160 | PRK10160 | taurine ABC transporter permease TauC; |
20-145 | 2.37e-12 | |||||
taurine ABC transporter permease TauC; Pssm-ID: 182276 Cd Length: 275 Bit Score: 67.50 E-value: 2.37e-12
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| PotC | COG1177 | ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
14-142 | 2.44e-12 | |||||
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 67.06 E-value: 2.44e-12
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| MetP | COG2011 | ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
16-161 | 2.29e-11 | |||||
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; Pssm-ID: 441614 Cd Length: 220 Bit Score: 63.54 E-value: 2.29e-11
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| ssuC | PRK11365 | aliphatic sulfonate ABC transporter permease SsuC; |
20-146 | 3.50e-11 | |||||
aliphatic sulfonate ABC transporter permease SsuC; Pssm-ID: 183100 Cd Length: 263 Bit Score: 63.80 E-value: 3.50e-11
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| PhnE | COG3639 | ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
16-149 | 1.29e-10 | |||||
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]; Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 61.64 E-value: 1.29e-10
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| HisM | COG0765 | ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
7-140 | 2.16e-10 | |||||
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 60.47 E-value: 2.16e-10
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| PotB | COG1176 | ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
18-153 | 1.81e-09 | |||||
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]; Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 58.62 E-value: 1.81e-09
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| PhnE | TIGR01097 | phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
16-149 | 5.55e-08 | |||||
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions] Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 53.70 E-value: 5.55e-08
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| FbpB | COG1178 | ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
28-152 | 7.45e-07 | |||||
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 51.70 E-value: 7.45e-07
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| UgpA | COG1175 | ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
18-153 | 7.54e-07 | |||||
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 50.90 E-value: 7.54e-07
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| DppC | COG1173 | ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
24-154 | 1.93e-06 | |||||
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]; Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 1.93e-06
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| PBP2_BCP_1 | cd13642 | Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline ... |
238-503 | 2.47e-06 | |||||
Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold; This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270360 [Multi-domain] Cd Length: 292 Bit Score: 49.31 E-value: 2.47e-06
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| TauA | COG0715 | ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Inorganic ion ... |
214-466 | 2.95e-06 | |||||
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Inorganic ion transport and metabolism]; Pssm-ID: 440479 [Multi-domain] Cd Length: 297 Bit Score: 48.85 E-value: 2.95e-06
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| 3a0107s02c | TIGR00974 | phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
27-152 | 3.57e-06 | |||||
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions] Pssm-ID: 273373 Cd Length: 271 Bit Score: 48.39 E-value: 3.57e-06
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| PRK10782 | PRK10782 | D-methionine ABC transporter permease MetI; |
16-152 | 7.23e-05 | |||||
D-methionine ABC transporter permease MetI; Pssm-ID: 182726 Cd Length: 217 Bit Score: 43.95 E-value: 7.23e-05
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| CysU | COG0555 | ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
16-146 | 4.71e-04 | |||||
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 42.04 E-value: 4.71e-04
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| potC | PRK09500 | spermidine/putrescine ABC transporter membrane protein; Reviewed |
12-142 | 2.04e-03 | |||||
spermidine/putrescine ABC transporter membrane protein; Reviewed Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 39.97 E-value: 2.04e-03
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| PhnU2 | TIGR03262 | putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
15-151 | 2.36e-03 | |||||
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines] Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 40.43 E-value: 2.36e-03
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| LplB | COG4209 | ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
15-139 | 4.25e-03 | |||||
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 39.30 E-value: 4.25e-03
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| Blast search parameters | ||||
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