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Conserved domains on  [gi|1780564669|gb|QGS84193|]
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cytochrome b, partial (mitochondrion) [Loxodonta africana]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-102 1.36e-68

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 209.49  E-value: 1.36e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00100   33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00100  113 WNIGIILLFTVMATAFMGYVLP 134
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-102 1.36e-68

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 209.49  E-value: 1.36e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00100   33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00100  113 WNIGIILLFTVMATAFMGYVLP 134
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-102 1.80e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 132.49  E-value: 1.80e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSY--LYS 78
Cdd:cd00284    25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                          90       100
                  ....*....|....*....|....
gi 1780564669  79 ETWNTGIMLLLITMATAFMGYVLP 102
Cdd:cd00284   105 LTWVIGVILLLLTMATAFMGYVLP 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-102 2.38e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 136.84  E-value: 2.38e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSY----- 75
Cdd:COG1290    42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpre 121

                          90       100
                  ....*....|....*....|....*..
gi 1780564669  76 LyseTWNTGIMLLLITMATAFMGYVLP 102
Cdd:COG1290   122 L---NWIIGVLLLLLTMAEAFTGYSLP 145
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-102 4.60e-37

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 123.26  E-value: 4.60e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYG--SYLYS 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|....
gi 1780564669  79 ETWNTGIMLLLITMATAFMGYVLP 102
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLP 119
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-102 1.36e-68

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 209.49  E-value: 1.36e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00100   33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00100  113 WNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00119
cytochrome b; Provisional
 1-102 1.81e-63

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 196.28  E-value: 1.81e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00119   34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00119  114 WNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00131
cytochrome b; Provisional
 1-102 2.16e-63

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 196.41  E-value: 2.16e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00131   33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00131  113 WNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00156
cytochrome b; Provisional
 1-102 7.90e-61

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 188.84  E-value: 7.90e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00156   23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00156  103 WMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00074
cytochrome b; Provisional
 1-102 1.81e-60

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 188.74  E-value: 1.81e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00074   34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00074  114 WNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00191
cytochrome b; Provisional
 1-102 1.49e-58

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 183.58  E-value: 1.49e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00191   30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00191  110 WNVGVILLILSMATAFLGYVLP 131
CYTB MTH00034
cytochrome b; Validated
 1-102 1.95e-56

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 178.36  E-value: 1.95e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00034   33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00034  113 WNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 1-102 8.33e-56

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 176.63  E-value: 8.33e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00145   34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00145  114 WNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 1-102 4.55e-54

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 172.17  E-value: 4.55e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00016   34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00016  114 WNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 1-102 7.78e-48

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 156.01  E-value: 7.78e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00022   32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00022  112 WNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00224
cytochrome b; Provisional
 1-102 1.24e-47

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 155.85  E-value: 1.24e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00224   34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00224  114 WNIGVILFILTMATAFLGYVLP 135
CYTB MTH00053
cytochrome b; Provisional
 1-102 5.04e-45

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 149.09  E-value: 5.04e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00053   34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00053  114 WNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-102 1.80e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 132.49  E-value: 1.80e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSY--LYS 78
Cdd:cd00284    25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                          90       100
                  ....*....|....*....|....
gi 1780564669  79 ETWNTGIMLLLITMATAFMGYVLP 102
Cdd:cd00284   105 LTWVIGVILLLLTMATAFMGYVLP 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-102 2.38e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 136.84  E-value: 2.38e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSY----- 75
Cdd:COG1290    42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpre 121

                          90       100
                  ....*....|....*....|....*..
gi 1780564669  76 LyseTWNTGIMLLLITMATAFMGYVLP 102
Cdd:COG1290   122 L---NWIIGVLLLLLTMAEAFTGYSLP 145
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-102 4.60e-37

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 123.26  E-value: 4.60e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYG--SYLYS 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|....
gi 1780564669  79 ETWNTGIMLLLITMATAFMGYVLP 102
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 1-102 3.25e-34

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 120.81  E-value: 3.25e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00033   30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00033  110 WIVGVLIFFIMMLTAFIGYVLP 131
CYTB MTH00086
cytochrome b; Provisional
 1-102 2.10e-30

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 110.03  E-value: 2.10e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSET 80
Cdd:MTH00086   22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                          90       100
                  ....*....|....*....|..
gi 1780564669  81 WNTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00086  102 WISGLTIYLLVMMEAFMGYVLV 123
PRK03735 PRK03735
cytochrome b6; Provisional
 1-102 6.65e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 82.84  E-value: 6.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSE- 79
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100
                  ....*....|....*....|....
gi 1780564669  80 -TWNTGIMLLLITMATAFMGYVLP 102
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLP 147
CYTB MTH00046
cytochrome b; Validated
 2-102 4.03e-19

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 80.03  E-value: 4.03e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   2 GSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSETW 81
Cdd:MTH00046   25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                          90       100
                  ....*....|....*....|.
gi 1780564669  82 NTGIMLLLITMATAFMGYVLP 102
Cdd:MTH00046  105 NVGFILYLLVMVEAFLGYILP 125
petB CHL00070
cytochrome b6
 1-102 1.57e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 65.90  E-value: 1.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780564669   1 FGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLHSNGASIFFLCLYTHIGRNIYYGSYLYSE- 79
Cdd:CHL00070   36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                          90       100
                  ....*....|....*....|....
gi 1780564669  80 -TWNTGIMLLLITMATAFMGYVLP 102
Cdd:CHL00070  116 lTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-102 7.66e-09

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 49.93  E-value: 7.66e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1780564669  56 SIFFLCLYTHIGRNIYYGSYLYSE--TWNTGIMLLLITMATAFMGYVLP 102
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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