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Conserved domains on  [gi|1779833461|gb|QGQ60892|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Scytalopus spillmanni]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.71e-156

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 442.34  E-value: 1.71e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1779833461 321 VYIPTTTLISLSVMLLPLSPMIFTTV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.71e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 442.34  E-value: 1.71e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1779833461 321 VYIPTTTLISLSVMLLPLSPMIFTTV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.68e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.68e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  23 SNHWMMAWTGLEINTLAIIPLI-SKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  91 HPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPT------LLTTMAIASAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 165 GGWMGLNQTQIRKVLAFSSISHLGWMTIILL----YNPKLTLLTFYLYCLMTSAIFL-----TLNTAKITNLATMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1779833461 236 KIPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 2.41e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 2.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  14 LLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLF-SSMTNAwFTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  92 PMS------------CLLLTTAISIKLGLTPFHFWFPEVIQGSSLttglllatlmkfPPTA----------------LLI 143
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPT------------PVTAflatapkiaafaallrLLV 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 144 LTSPSLNP---TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTL--LTFYL--YCLMTSAIF 216
Cdd:COG1007   259 EAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAF 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 217 LTL--------NTAKITNLATMmtAWTKiPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLL 288
Cdd:COG1007   339 AVIlllsrkggEAEEIEDLAGL--ARRS-PLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                         330
                  ....*....|
gi 1779833461 289 GLFFYLRLAY 298
Cdd:COG1007   416 SAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.44e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 1.44e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  14 LLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  93 ------------MSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSL-------NPTL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 154 LTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTL--LTFYL--YCLMTSAIFLTL------NTAK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1779833461 224 ITNLATMMTAWTKIPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.71e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 442.34  E-value: 1.71e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1779833461 321 VYIPTTTLISLSVMLLPLSPMIFTTV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 3.50e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 370.67  E-value: 3.50e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSlNPTLLTTMAIA 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHT-NK 319
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                         330       340
                  ....*....|....*....|....*
gi 1779833461 320 SVYIPTTTLISLSVMLLPLSPMIFT 344
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 3.22e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 368.09  E-value: 3.22e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....
gi 1779833461 321 VYIPTTTLISLSVMLLPLSPMIFT 344
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-344 4.41e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 329.50  E-value: 4.41e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*
gi 1779833461 321 VYIPTT-TLISLSVMLLPLSPMIFT 344
Cdd:MTH00105  321 KPMTLLpTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-344 3.53e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 276.46  E-value: 3.53e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....
gi 1779833461 321 VYIPTTTLISLSVMLLPLSPMIFT 344
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 2.02e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 241.37  E-value: 2.02e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 1779833461 321 VYIPTTTLISLSVMLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.68e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 184.26  E-value: 1.68e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   1 MNPQAKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  81 TGqwditqLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPtalLILTSPSLNPTLLTTMAIA 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 161 SAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 241 TTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCAtITLPPNSSNHMKQWHTNKS 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|...
gi 1779833461 321 VYIpTTTLISLSVMLLPLSPMIF 343
Cdd:MTH00160  312 SLI-LNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-336 1.04e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.81  E-value: 1.04e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   5 AKMISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  85 DITqlthpmscLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNP-TLLTTMAIASAA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 164 LGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKiTNLATMMTAWTKIPPLTTT 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD-SGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 244 LMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATItlppnSSNHMKQWHTNKSVYI 323
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL-----SSSKSKKSNSSKVLNS 310

                         330
                  ....*....|...
gi 1779833461 324 PTTTLISLSVMLL 336
Cdd:MTH00144  311 SIISLNLLGGLLF 323
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-310 3.91e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 149.16  E-value: 3.91e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  12 SLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSsMTNAWFTgqwdITQLTH 91
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----PSLLKN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  92 PMScLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIASAALGGWMGLN 171
Cdd:MTH00011   89 ITA-LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 172 QTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPLTTTLMLALLSL 251
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1779833461 252 AGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYcATITLPPNSSN 310
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-346 1.06e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.80  E-value: 1.06e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461   7 MISIMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMtnAWFTGQWdi 86
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  87 tqlTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPtaLLILTSPSLNPTLLTTMAIASAALGG 166
Cdd:MTH00197   77 ---LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 167 WMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKITNLATMMTAWTKIPPLTTTLML 246
Cdd:MTH00197  152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 247 ALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYcatiTLPPNSSNHMKQWHTNKSVYIPtt 326
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY----KSLILSNWMINFLMKINLLYSG-- 305

                         330       340
                  ....*....|....*....|
gi 1779833461 327 tLISLSVMLLPLsPMIFTTV 346
Cdd:MTH00197  306 -LFILLMMMLPL-LMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.68e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.68e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  23 SNHWMMAWTGLEINTLAIIPLI-SKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  91 HPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPT------LLTTMAIASAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 165 GGWMGLNQTQIRKVLAFSSISHLGWMTIILL----YNPKLTLLTFYLYCLMTSAIFL-----TLNTAKITNLATMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1779833461 236 KIPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 2.41e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 2.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  14 LLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLF-SSMTNAwFTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  92 PMS------------CLLLTTAISIKLGLTPFHFWFPEVIQGSSLttglllatlmkfPPTA----------------LLI 143
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPT------------PVTAflatapkiaafaallrLLV 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 144 LTSPSLNP---TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTL--LTFYL--YCLMTSAIF 216
Cdd:COG1007   259 EAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAF 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 217 LTL--------NTAKITNLATMmtAWTKiPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLL 288
Cdd:COG1007   339 AVIlllsrkggEAEEIEDLAGL--ARRS-PLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVI 415

                         330
                  ....*....|
gi 1779833461 289 GLFFYLRLAY 298
Cdd:COG1007   416 SAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.68e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 91.25  E-value: 1.68e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  13 LLLGTTITISSNHWMMAWTGLEINTLAIIPLI-SKSHHPRAIEAATKYFLTQAAASTLLLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  79 WFTGQWDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFppTALLILTSPSLNPTLLTTMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 159 IASAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNP----KLTLLTFYLYCLMTSAIF---LTLNTAKitNLATMM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYK--NLIIEF 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1779833461 232 TAWTKIPPLTTTLMLALLSLAG-LPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRL 296
Cdd:MTH00196  238 SGLSRRLPILAITLALTFLSIAgIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.93e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 88.72  E-value: 1.93e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  14 LLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  93 ------------MSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMK---FPPTA-LLILTSPSLNPT---L 153
Cdd:PRK05777  193 ladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 154 LTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTL--LTFYL--YCLMTSAIFLTL--------NT 221
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVIsllrrkggEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1779833461 222 AKITNLATMmtAWTKiPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRL 296
Cdd:PRK05777  353 ESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.44e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 1.44e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  14 LLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  93 ------------MSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSL-------NPTL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 154 LTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTL--LTFYL--YCLMTSAIFLTL------NTAK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1779833461 224 ITNLATMMTAWTKIPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-337 1.85e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 80.06  E-value: 1.85e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  10 IMSLLLGTTITISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDI-- 86
Cdd:MTH00199  103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  87 --TQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTtmAIASAAL 164
Cdd:MTH00199  183 inSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 165 GGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNP----KLTLLTFYLYCLMTSAIFLTLNTAKITN--LATMMTAWTKIP 238
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNP 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 239 PLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYcaTITLPPNSS--------N 310
Cdd:MTH00199  341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ--IIYFQADYSiliwqkvlK 418

                         330       340
                  ....*....|....*....|....*..
gi 1779833461 311 HMKQWHTNKSVYIPTTTLISLSVMLLP 337
Cdd:MTH00199  419 KEERLDLSKSILIGVTFFIILFLMISP 445
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-192 2.00e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.12  E-value: 2.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  15 LGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAI---------EAATKYFLTQAAASTLLLFSSMTNAWFTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  84 ------------WDITQLTHPMSCLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLATLMKFppTALLILTSPSLNP 151
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1779833461 152 TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTI 192
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 3.57e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.87  E-value: 3.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  13 LLLGTTITISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  93 MS----------CLLLTTAISIKLGLTPFHFWFPEViqgsslttglllatlMKFPPTA---------------------L 141
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDA---------------YPAAPSPvsallsglltkvgvyailrvlT 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 142 LILTSPSLNP--TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTI-ILLYNPK-LTLLTFYL--YCLMTSAI 215
Cdd:COG0651   261 LLFGADPALFlgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALL 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 216 FLT----LNTAKITNLATMMTAWTKIPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLF 291
Cdd:COG0651   341 FLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLA 420


                  ....*
gi 1779833461 292 FYLRL 296
Cdd:COG0651   421 YFVRI 425
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 7.99e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 50.39  E-value: 7.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  51 RAIEAATKYFLTQAAASTLLL--FSsmtnaWFTGQ-------WDI------TQLTHPMSCLL----LTTAISIKLGLTPF 111
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 112 HFWFPEVIQGSSLTTGLLLATLMKFPPTALLI----LTSPSLNP---TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSI 184
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATrifdIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 185 SHLGWMTIILL-------YNPKLTLLTFYlyclmtsaIFLTLNTAKITNLATMMTA----------WTKIPPLTTTLMLA 247
Cdd:CHL00049  314 GQIGYVIIGIIvgdsndgYASMITYMLFY--------IFMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALC 385

                         250
                  ....*....|....*.
gi 1779833461 248 LLSLAGLPPLTGFLPK 263
Cdd:CHL00049  386 LLSLGGIPPLAGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-335 1.47e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.88  E-value: 1.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  33 LEINTLAIIPLISKSHHPRAIEAATKYFLTQAAASTLLLFS-SMTNAwFTGQWDITQLTH--PMSCLLLT------TAIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 104 IKLGLTPFHFWFPEVIQG-SSLTTGLLLATLMKFPPTALL----------ILTSPSLNpTLLTTMAIASAALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 173 TQIRKVLAFSSISHLGWMTIILLYNPKLTLL--TFYL--YCLMTSAIFLTLN----TAKITNLATMMTAWTKIPPLTTTL 244
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 245 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAYCATITLPPNSSNHMKQWHTNKSVyIP 324
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQEAPLGML-AP 451

                         330
                  ....*....|.
gi 1779833461 325 TTTLISLSVML 335
Cdd:PRK08375  452 SLALALLSLLL 462
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 1.98e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 49.31  E-value: 1.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  38 LAIIP---LISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQW--DITQLT-HPMS-------CLLLTTAISI 104
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 105 KLGLTPFHFWFPEV-IQGSSLTTGLLLATLMK-------------FPPTALLILTspslnptLLTTMAIASAALGGWMGL 170
Cdd:COG1008   222 KVPMFPFHTWLPDAhVEAPTAGSVLLAGVLLKmggygllrfalplFPEASAYFAP-------LLAALGVIGIIYGALVAL 294

                         170       180
                  ....*....|....*....|..
gi 1779833461 171 NQTQIRKVLAFSSISHLGWMTI 192
Cdd:COG1008   295 AQTDLKRLIAYSSVSHMGFVLL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 2.01e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 44.17  E-value: 2.01e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1779833461 291 FFYLRLAYCATITLPPNSSNHMKQWHTNK-SVYIPTTTLISLSVMLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNStKNTLLLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 3.49e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 3.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  50 PRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQ-WDITQL-THPMSC-------LLLTTAISIKLGLTPFHFWFPEV-I 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 120 QGSSLTTGLLLATLMKFPPTALLILTSPsLNP-------TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-194 5.46e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.22  E-value: 5.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  48 HHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTH------------PMSCLLLTTAISiKLGLTPFHFWF 115
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 116 PEVIQGsslttglllatlmkfpPTA----------------LLILTSP--SLNPTLLTTMAI---ASAALGGWMGLNQTQ 174
Cdd:COG1009   235 PDAMEG----------------PTPvsallhaatmvkagvyLLARLSPlfALSPVWLTVVAIigaITALFAALIALAQTD 298

                         170       180
                  ....*....|....*....|
gi 1779833461 175 IRKVLAFSSISHLGWMTIIL 194
Cdd:COG1009   299 IKRVLAYSTVSQLGYMFLAL 318
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 6.27e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.78  E-value: 6.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  33 LEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASTLLLFS---------SMTNAWFTGQWDITQLTHPMSCL-LLTTA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 102 ISIKLGLTPFHFW----FPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPT----LLTTMAIASAALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 174 QIRKVLAFSSISHLGWMTI---ILLYNPKLTLLTFYLYCLMTSAIFLTLNTAKIT-----------------NLATMMTA 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHALYKallfltagaviyetgtrNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1779833461 234 WTKIPPLTTTLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.46e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 46.58  E-value: 1.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  50 PRAIEAATKYFLTQAAASTLLLF-SSMTNAWFTGQWDITQLTHPM----------SCLLLTTAISIKLGLTPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitspslglalALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 119 IQGSSLTTGLLLATLMKFPPTALLI--LTS--PSLNP---TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMT 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIrlLVTafPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 192 IILLYNPK--LTLLTFYL--YCLM-----TSAIFLTLNTA--KITNLATMmtaWTKIPPLTTTLMLALLSLAGLPPLTGF 260
Cdd:PRK02504  317 IGLVAGTEagYASMVFYLlaYLFMnlgafACVILFSLRTGtdQISDYAGL---YQKDPLLTLGLSLCLLSLGGIPPLAGF 393


                  ...
gi 1779833461 261 LPK 263
Cdd:PRK02504  394 FGK 396
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 3.46e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 3.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  38 LAIIPL---ISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTG--QWDITQL---THPMSCLLLTTA-----ISI 104
Cdd:PRK06473  138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 105 KLGLTPFHFWFPEV-IQGSSLTTGLLLATLMKFPPTALL------ILTSPSLNPTLLTTMAIASAALGGWMGLNQTQIRK 177
Cdd:PRK06473  218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                         170
                  ....*....|...
gi 1779833461 178 VLAFSSISHLGWM 190
Cdd:PRK06473  298 MVAYSSIGHMGYI 310
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 1.03e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 40.68  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  20 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRAIEAATKYFL------TQAAASTLLLFSS----MTNAWFTGQW-DITQ 88
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANaatvMGDGEMAILWtELLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  89 LTHPMSCLLLTTAISI-------KLGLTPFHFWFPEV-IQGSSLTTGLLLATLMKFPPTALL---ILTSPSLNP----TL 153
Cdd:PRK06458  204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLryyILIDAAIGSdfpgRL 283

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1779833461 154 LTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTI 192
Cdd:PRK06458  284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 1.93e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  52 AIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHPMSCLLLTTAISIKLGLT----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 116 PEVIQGSSLTTGLLLATLMKFPPTALLILTSP--SLNPTLLTTMAIA---SAALGGWMGLNQTQIRKVLAFSSISHLGWM 190
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTgaiTAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.20e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.91  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  96 LLLTTAISiKLGLTPFHFWFPEVIQGSSLTTGLLLATLM---------KFPPTALlilTSPSLNPTLLTtMAIASAALGG 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPGFA---DVPVWRPTVLV-LGLATMLLGG 282

                          90       100
                  ....*....|....*....|....*...
gi 1779833461 167 WMGLNQTQIRKVLAFSSISHLGWMTIIL 194
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12650 PRK12650
DUF4040 family protein;
110-304 3.08e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.64  E-value: 3.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 110 PFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSL--NPT---LLTTMAIASAALGGWMGLNQTQIRKVLAFSSI 184
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 185 SHLGWM-TIILLYNP-KLT--LLTFYLYCLMTSAIFLTL-------NTAKITNLATMmtaWTKIPPLTTTLMLALLSLAG 253
Cdd:PRK12650  306 SQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdhqaGTRDIRRLGSL---WRRMPFTFVSVTIAALSMAA 382

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1779833461 254 LPPLTGFLPKWLIIQELTKQEMtPTATTITLLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650  383 VPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-289 3.44e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.13  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 110 PFHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLL--TTMAIASAA---LGGWMGLNQTQIRKVLAFSSI 184
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 185 SHLGWMTIILLYNPKLTLLTFYLY----CLMTSAIFLT-------LNTAKITNLATMmtaWTKIPPLTTTLMLALLSLAG 253
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVagiidheTGTRDITKLGGL---RRAMPITAAAALLAALSMAG 369

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1779833461 254 LPPLTGFLPKWLIIQELTkqEMTPTATTITLLSLLG 289
Cdd:PRK12647  370 LPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 4.59e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.79  E-value: 4.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  92 PMSCLLLTTAI--SIKLGLtpfHFWFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPTLLTTMAIA-----SAAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 165 GGWMGLNQTQIRKVLAFSSISHLGWMTIILLYNPKLTLLTFYL--YCLMTSAIFLTLN------TAKITNLATMMTAWTK 236
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1779833461 237 IPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-190 4.64e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.91  E-value: 4.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  10 IMSLLLGTTITISSNHW---MMAW--TGLEINTLaiipLISKSHHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQW 84
Cdd:PRK08168  106 LAGVLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  85 DITQL-----THPMS------CLLLTTAISIKLGLTPFHFWFPEVIQGSSLTTGLLLA--------TLMKFPPtalLILT 145
Cdd:PRK08168  182 SLSALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP---LLEQ 258

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1779833461 146 SPSLNpTLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWM 190
Cdd:PRK08168  259 APPAR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 141-191 5.72e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 38.60  E-value: 5.72e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1779833461 141 LLILTSP--SLNPTLLTTMAI---ASAALGGWMGLNQTQIRKVLAFSSISHLGWMT 191
Cdd:PRK06590  266 LVARMSPlfELSPEALLFVAIvgaVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMF 321
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 6.62e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.44  E-value: 6.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  34 EINTLA---IIPLISKshhpRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHPMS-----------CLLLT 99
Cdd:PRK08668  128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivFLFLL 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 100 TAISIKLGLTPFHFWFPEVI-------------QGSSLTTGLLLATLMKFPPTALL-----ILTSPSLNPTLLTTMAIaS 161
Cdd:PRK08668  204 AFGVAKAGIFPLHVWAPDAYseapqsfsavlsgQLSKLGAYGFLLVLYVLPGTKLFsefgtYRGVPLFNYILAWLGNI-S 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 162 AALGGWMGLNQTQIRKVLAFSSISHLGWmtiILLYNPKLTLLTF-------YLYCLMTSAIFLTLNT----AKITNLATM 230
Cdd:PRK08668  283 IIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEM 359

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1779833461 231 MTAWTKIPPLTTTLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTITLLSLLGLFFYLRLAY 298
Cdd:PRK08668  360 GGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 7.65e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.09  E-value: 7.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  55 AATKYFLTQAAASTLLLFSSMTNAWFTGQ--WDITQLTH---PMSCLLLT-----TAISIKLGLTPFHFWFPEVI-QGSS 123
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1779833461 124 LTTGLLLATLMKFPPTALLILTSPSLNPT------LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMTI 192
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 8.46e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.87  E-value: 8.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  50 PRAIEAATKYFLTQAAASTLLLFSSMTNAWF----TGQWDITQL-THPMS---------CLLLttAISIKLGLTPFHFWF 115
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPpgvqywlflAFFI--AFAVKMPMFPLHTWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 116 PEV-IQGsslttglllatlmkfpPTA-----------------------LLILTSPSLNPtLLTTMAIASAALGGWMGLN 171
Cdd:PRK05846  235 PDAhVQA----------------PTAgsvllagillkmgaygllrfslpLFPDASHEFAP-IIITLGVIAIIYGALVALA 297

                         170       180
                  ....*....|....*....|.
gi 1779833461 172 QTQIRKVLAFSSISHLGWMTI 192
Cdd:PRK05846  298 QTDIKKLIAYSSISHMGFVTL 318
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 9.17e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 37.89  E-value: 9.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461  48 HHPRAIEAATKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTHPMSC--------LLLTTAISIKLGLT------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 114 WFPEVIQGSSLTTGLLLATLMKFPPTALLILTSPSLNPT-----LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779833461 189 WMTIILLYNPK------LTLLTFYL--YCLMTSAIFLTL----NTAKITNLATMMTAWTKIPPLTTTLMLALLSLAGLPP 256
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 1779833461 257 LTGFLPK 263
Cdd:PRK12649  396 LNGFLSK 402
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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