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Conserved domains on  [gi|1779109356|ref|WP_155162649|]
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major capsid protein [Sansalvadorimonas verongulae]

Protein Classification

major capsid protein( domain architecture ID 10511084)

major capsid protein similar to gpE, which interacts with the packaging chaperone, FI protein (gpFI); the interaction is essential for the function of gpFI, which is required for DNA packaging

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 12-328 7.82e-105

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


:

Pssm-ID: 427552  Cd Length: 335  Bit Score: 310.06  E-value: 7.82e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356  12 FTMSSLTATINHAPHKPGRIGELgLFVDAGINTTSLQVESKNGTLKLLPTTERGAPATQAKANKRNLRNFTVTHIPHDST 91
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDL-LFPERPVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356  92 ILADEVQNVRAFGSTSALEGIQTVVNQRLTDIRANHEVTLEHLRLGAIKGQILDADGSIIYDLFDEFKVQQQTH-DFAFS 170
Cdd:pfam03864  80 ITADELQNVRAFGEETPLERVQRVVARKLADLRDKIDRTLEWMRAGALKGGILDADGETLYDLFVDFGVTAKHTiDFLLG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356 171 DD--TLDVRDTCVKMRRKV-DEALGVTMYTHLHAFCGAEFYDALVGHPYVKESYQRYQAGAMLR-----KDHRDGFHYSN 242
Cdd:pfam03864 160 TAkwDDDVRADPLEDLRAWeDLLAKGTGGTGVRALCGPKFFDALISHPKVKEAYDNTQAGLVGQleaaeLDLRDGFTFGG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356 243 TMWEEYLGQV------EGVPFIEPDEAYVIPMG-SNIFRTWFGPADFIETAN--TIGLPLYAKQK-PLDFDKGVQLHTQS 312
Cdd:pfam03864 240 ITFEEYRGTYtddadgTSKPFIPDGEVLLFPTGvADGFRTYGAPADYMEDVNagTVGLPRYAKQWeERDDPKGRDLEAQS 319

                         330
                  ....*....|....*.
gi 1779109356 313 NPLPLCLKPRAVIKCT 328
Cdd:pfam03864 320 NPLPVCTRPDALVKAT 335
 
Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 12-328 7.82e-105

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


Pssm-ID: 427552  Cd Length: 335  Bit Score: 310.06  E-value: 7.82e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356  12 FTMSSLTATINHAPHKPGRIGELgLFVDAGINTTSLQVESKNGTLKLLPTTERGAPATQAKANKRNLRNFTVTHIPHDST 91
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDL-LFPERPVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356  92 ILADEVQNVRAFGSTSALEGIQTVVNQRLTDIRANHEVTLEHLRLGAIKGQILDADGSIIYDLFDEFKVQQQTH-DFAFS 170
Cdd:pfam03864  80 ITADELQNVRAFGEETPLERVQRVVARKLADLRDKIDRTLEWMRAGALKGGILDADGETLYDLFVDFGVTAKHTiDFLLG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356 171 DD--TLDVRDTCVKMRRKV-DEALGVTMYTHLHAFCGAEFYDALVGHPYVKESYQRYQAGAMLR-----KDHRDGFHYSN 242
Cdd:pfam03864 160 TAkwDDDVRADPLEDLRAWeDLLAKGTGGTGVRALCGPKFFDALISHPKVKEAYDNTQAGLVGQleaaeLDLRDGFTFGG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356 243 TMWEEYLGQV------EGVPFIEPDEAYVIPMG-SNIFRTWFGPADFIETAN--TIGLPLYAKQK-PLDFDKGVQLHTQS 312
Cdd:pfam03864 240 ITFEEYRGTYtddadgTSKPFIPDGEVLLFPTGvADGFRTYGAPADYMEDVNagTVGLPRYAKQWeERDDPKGRDLEAQS 319

                         330
                  ....*....|....*.
gi 1779109356 313 NPLPLCLKPRAVIKCT 328
Cdd:pfam03864 320 NPLPVCTRPDALVKAT 335
 
Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 12-328 7.82e-105

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


Pssm-ID: 427552  Cd Length: 335  Bit Score: 310.06  E-value: 7.82e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356  12 FTMSSLTATINHAPHKPGRIGELgLFVDAGINTTSLQVESKNGTLKLLPTTERGAPATQAKANKRNLRNFTVTHIPHDST 91
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDL-LFPERPVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356  92 ILADEVQNVRAFGSTSALEGIQTVVNQRLTDIRANHEVTLEHLRLGAIKGQILDADGSIIYDLFDEFKVQQQTH-DFAFS 170
Cdd:pfam03864  80 ITADELQNVRAFGEETPLERVQRVVARKLADLRDKIDRTLEWMRAGALKGGILDADGETLYDLFVDFGVTAKHTiDFLLG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356 171 DD--TLDVRDTCVKMRRKV-DEALGVTMYTHLHAFCGAEFYDALVGHPYVKESYQRYQAGAMLR-----KDHRDGFHYSN 242
Cdd:pfam03864 160 TAkwDDDVRADPLEDLRAWeDLLAKGTGGTGVRALCGPKFFDALISHPKVKEAYDNTQAGLVGQleaaeLDLRDGFTFGG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1779109356 243 TMWEEYLGQV------EGVPFIEPDEAYVIPMG-SNIFRTWFGPADFIETAN--TIGLPLYAKQK-PLDFDKGVQLHTQS 312
Cdd:pfam03864 240 ITFEEYRGTYtddadgTSKPFIPDGEVLLFPTGvADGFRTYGAPADYMEDVNagTVGLPRYAKQWeERDDPKGRDLEAQS 319

                         330
                  ....*....|....*.
gi 1779109356 313 NPLPLCLKPRAVIKCT 328
Cdd:pfam03864 320 NPLPVCTRPDALVKAT 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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