NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1774463595|gb|QGG69691|]
View 

cell division activator CedA [Salmonella enterica subsp. enterica serovar Hvittingfoss]

Protein Classification

cell division activator CedA( domain architecture ID 10013431)

cell division activator CedA activates the cell division inhibited by chromosomal DNA over-replication

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10113 PRK10113
cell division activator CedA;
1-80 2.81e-52

cell division activator CedA;


:

Pssm-ID: 182246  Cd Length: 80  Bit Score: 157.37  E-value: 2.81e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774463595  1 MMKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYVAFVLTGESFQRSPAFSVPESAQRWANQVRQENEIAD 80
Cdd:PRK10113   1 MMKPLRQQNRQIISYVPRVEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESFLRSPAFSVPESAQRWANQIRQEGEVTE 80
 
Name Accession Description Interval E-value
PRK10113 PRK10113
cell division activator CedA;
1-80 2.81e-52

cell division activator CedA;


Pssm-ID: 182246  Cd Length: 80  Bit Score: 157.37  E-value: 2.81e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774463595  1 MMKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYVAFVLTGESFQRSPAFSVPESAQRWANQVRQENEIAD 80
Cdd:PRK10113   1 MMKPLRQQNRQIISYVPRVEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESFLRSPAFSVPESAQRWANQIRQEGEVTE 80
CedA pfam10729
Cell division activator CedA; CedA is made up of four antiparallel beta-strands and an ...
 2-75 3.40e-43

Cell division activator CedA; CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet..


Pssm-ID: 313850  Cd Length: 75  Bit Score: 134.39  E-value: 3.40e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1774463595  2 MKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYVAFVLTGESFQRSPAFSVPESAQRWANQVRQE 75
Cdd:pfam10729  1 MKPLRQQNRPIISYVPRVEPAPPEHAVKMDEFRDVWILKGKYVAFILMGDHFRQSPAFDIPEAAQRWADQVRQD 74
 
Name Accession Description Interval E-value
PRK10113 PRK10113
cell division activator CedA;
1-80 2.81e-52

cell division activator CedA;


Pssm-ID: 182246  Cd Length: 80  Bit Score: 157.37  E-value: 2.81e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774463595  1 MMKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYVAFVLTGESFQRSPAFSVPESAQRWANQVRQENEIAD 80
Cdd:PRK10113   1 MMKPLRQQNRQIISYVPRVEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESFLRSPAFSVPESAQRWANQIRQEGEVTE 80
CedA pfam10729
Cell division activator CedA; CedA is made up of four antiparallel beta-strands and an ...
 2-75 3.40e-43

Cell division activator CedA; CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet..


Pssm-ID: 313850  Cd Length: 75  Bit Score: 134.39  E-value: 3.40e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1774463595  2 MKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYVAFVLTGESFQRSPAFSVPESAQRWANQVRQE 75
Cdd:pfam10729  1 MKPLRQQNRPIISYVPRVEPAPPEHAVKMDEFRDVWILKGKYVAFILMGDHFRQSPAFDIPEAAQRWADQVRQD 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH