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Conserved domains on  [gi|1773094938|ref|NP_001362776|]
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protein XNDC1N isoform 1 [Homo sapiens]

Protein Classification

XRCC1_N domain-containing protein( domain architecture ID 10486086)

XRCC1_N domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
XRCC1_N pfam01834
XRCC1 N terminal domain;
1-150 1.16e-72

XRCC1 N terminal domain;


:

Pssm-ID: 460356  Cd Length: 148  Bit Score: 217.88  E-value: 1.16e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773094938   1 MAPVKISHVVSFSSQDPKYPVENLLNPDsPRRPWLGCPQDkSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWP 80
Cdd:pfam01834   1 MPPIKLKHVVSCSSEDPVHPAENLLKSD-TYRKWKCAKPG-EKQASVELQLERASQITSIDIGNEGSAFVEVLVGRSSWP 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773094938  81 LDRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLRV 150
Cdd:pfam01834  79 DDQDFEVLLVTSSFMTPSESKNGTNRNRVRMFGKDKLNSSAAEEKWDRVKIVCTQPFNKTVQYGLSFIKF 148
 
Name Accession Description Interval E-value
XRCC1_N pfam01834
XRCC1 N terminal domain;
1-150 1.16e-72

XRCC1 N terminal domain;


Pssm-ID: 460356  Cd Length: 148  Bit Score: 217.88  E-value: 1.16e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773094938   1 MAPVKISHVVSFSSQDPKYPVENLLNPDsPRRPWLGCPQDkSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWP 80
Cdd:pfam01834   1 MPPIKLKHVVSCSSEDPVHPAENLLKSD-TYRKWKCAKPG-EKQASVELQLERASQITSIDIGNEGSAFVEVLVGRSSWP 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773094938  81 LDRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLRV 150
Cdd:pfam01834  79 DDQDFEVLLVTSSFMTPSESKNGTNRNRVRMFGKDKLNSSAAEEKWDRVKIVCTQPFNKTVQYGLSFIKF 148
 
Name Accession Description Interval E-value
XRCC1_N pfam01834
XRCC1 N terminal domain;
1-150 1.16e-72

XRCC1 N terminal domain;


Pssm-ID: 460356  Cd Length: 148  Bit Score: 217.88  E-value: 1.16e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773094938   1 MAPVKISHVVSFSSQDPKYPVENLLNPDsPRRPWLGCPQDkSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWP 80
Cdd:pfam01834   1 MPPIKLKHVVSCSSEDPVHPAENLLKSD-TYRKWKCAKPG-EKQASVELQLERASQITSIDIGNEGSAFVEVLVGRSSWP 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773094938  81 LDRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDVDFLAPASGELWDRLRLTCSRPFTRHQSFGLAFLRV 150
Cdd:pfam01834  79 DDQDFEVLLVTSSFMTPSESKNGTNRNRVRMFGKDKLNSSAAEEKWDRVKIVCTQPFNKTVQYGLSFIKF 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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