NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1772203932|gb|QFY26042|]
View 

RepA leader peptide Tap (plasmid) [Klebsiella variicola]

Protein Classification

tap_IncFII_lead family protein( domain architecture ID 10022478)

tap_IncFII_lead family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
tap_IncFII_lead TIGR03475
RepA leader peptide Tap; This protein is a translated leader peptide that actis in the ...
 1-25 1.92e-07

RepA leader peptide Tap; This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]


:

Pssm-ID: 132515  Cd Length: 25  Bit Score: 40.25  E-value: 1.92e-07
                         10        20
                 ....*....|....*....|....*
gi 1772203932  1 MHRKLQDQFLCHSLLPCNISAGSGD 25
Cdd:TIGR03475  1 MLRKVQYLFLCHLLLPCNISAGRCD 25
 
Name Accession Description Interval E-value
tap_IncFII_lead TIGR03475
RepA leader peptide Tap; This protein is a translated leader peptide that actis in the ...
 1-25 1.92e-07

RepA leader peptide Tap; This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 132515  Cd Length: 25  Bit Score: 40.25  E-value: 1.92e-07
                         10        20
                 ....*....|....*....|....*
gi 1772203932  1 MHRKLQDQFLCHSLLPCNISAGSGD 25
Cdd:TIGR03475  1 MLRKVQYLFLCHLLLPCNISAGRCD 25
RepA1_leader pfam08048
Tap RepA1 leader peptide; This family consists of the RepA1 leader peptides. The frequency of ...
 1-25 1.84e-05

Tap RepA1 leader peptide; This family consists of the RepA1 leader peptides. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesized, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid. The tap gene encodes a 24-amino acids protein. The translation of tap is required for translation of repA.


Pssm-ID: 116658  Cd Length: 25  Bit Score: 35.22  E-value: 1.84e-05
                         10        20
                 ....*....|....*....|....*
gi 1772203932  1 MHRKLQDQFLCHSLLPCNISAGSGD 25
Cdd:pfam08048  1 MLRKVQYLFLCHLLLPCNISAGRCD 25
 
Name Accession Description Interval E-value
tap_IncFII_lead TIGR03475
RepA leader peptide Tap; This protein is a translated leader peptide that actis in the ...
 1-25 1.92e-07

RepA leader peptide Tap; This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 132515  Cd Length: 25  Bit Score: 40.25  E-value: 1.92e-07
                         10        20
                 ....*....|....*....|....*
gi 1772203932  1 MHRKLQDQFLCHSLLPCNISAGSGD 25
Cdd:TIGR03475  1 MLRKVQYLFLCHLLLPCNISAGRCD 25
RepA1_leader pfam08048
Tap RepA1 leader peptide; This family consists of the RepA1 leader peptides. The frequency of ...
 1-25 1.84e-05

Tap RepA1 leader peptide; This family consists of the RepA1 leader peptides. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesized, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid. The tap gene encodes a 24-amino acids protein. The translation of tap is required for translation of repA.


Pssm-ID: 116658  Cd Length: 25  Bit Score: 35.22  E-value: 1.84e-05
                         10        20
                 ....*....|....*....|....*
gi 1772203932  1 MHRKLQDQFLCHSLLPCNISAGSGD 25
Cdd:pfam08048  1 MLRKVQYLFLCHLLLPCNISAGRCD 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH