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Conserved domains on  [gi|1772203917|gb|QFY26027|]
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antirestriction protein (plasmid) [Klebsiella variicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Antirestrict super family cl03947
Antirestriction protein; This family includes various protein that are involved in ...
 45-142 1.55e-33

Antirestriction protein; This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.


The actual alignment was detected with superfamily member pfam03230:

Pssm-ID: 427206  Cd Length: 92  Bit Score: 113.11  E-value: 1.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1772203917  45 PGYEGGFWHFIRLPEGGGYMMPDS-GRVHLVSGENWFDRTVSADAAGIILTSLAINrRLAAHHDSsnpaltRLYMLRDAQ 123
Cdd:pfam03230   1 EDYGGGFWHFYTLSNGGLYMAPDSdDRYRLEVAGNGFDGEVSADAAGIIATLFALS-HLAFETED------DALAERYHR 73

                          90
                  ....*....|....*....
gi 1772203917 124 LWNHITLHPECSAIYAALD 142
Cdd:pfam03230  74 LREYALQHPEAAAIYRAID 92
 
Name Accession Description Interval E-value
Antirestrict pfam03230
Antirestriction protein; This family includes various protein that are involved in ...
 45-142 1.55e-33

Antirestriction protein; This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.


Pssm-ID: 427206  Cd Length: 92  Bit Score: 113.11  E-value: 1.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1772203917  45 PGYEGGFWHFIRLPEGGGYMMPDS-GRVHLVSGENWFDRTVSADAAGIILTSLAINrRLAAHHDSsnpaltRLYMLRDAQ 123
Cdd:pfam03230   1 EDYGGGFWHFYTLSNGGLYMAPDSdDRYRLEVAGNGFDGEVSADAAGIIATLFALS-HLAFETED------DALAERYHR 73

                          90
                  ....*....|....*....
gi 1772203917 124 LWNHITLHPECSAIYAALD 142
Cdd:pfam03230  74 LREYALQHPEAAAIYRAID 92
 
Name Accession Description Interval E-value
Antirestrict pfam03230
Antirestriction protein; This family includes various protein that are involved in ...
 45-142 1.55e-33

Antirestriction protein; This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.


Pssm-ID: 427206  Cd Length: 92  Bit Score: 113.11  E-value: 1.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1772203917  45 PGYEGGFWHFIRLPEGGGYMMPDS-GRVHLVSGENWFDRTVSADAAGIILTSLAINrRLAAHHDSsnpaltRLYMLRDAQ 123
Cdd:pfam03230   1 EDYGGGFWHFYTLSNGGLYMAPDSdDRYRLEVAGNGFDGEVSADAAGIIATLFALS-HLAFETED------DALAERYHR 73

                          90
                  ....*....|....*....
gi 1772203917 124 LWNHITLHPECSAIYAALD 142
Cdd:pfam03230  74 LREYALQHPEAAAIYRAID 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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