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Conserved domains on  [gi|1770726290|ref|NP_001336261|]
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target of Nesh-SH3 isoform 4 precursor [Homo sapiens]

Protein Classification

FN3 domain-containing protein( domain architecture ID 12186373)

FN3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 857-948 1.09e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 59.05  E-value: 1.09e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  857 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNP 934
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79

                           90
                   ....*....|....
gi 1770726290  935 LGEGPVSNTVAFST 948
Cdd:cd00063     80 GGESPPSESVTVTT 93
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 257-591 2.62e-10

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.96  E-value: 2.62e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  257 DSAKSPEKAPlggvilvHLIIPGLNETTVKLPASLMFEISDALKTQLAKNETLALPAESKTPEVEKISARPTTVTPETVP 336
Cdd:PHA03247  2703 PPPPTPEPAP-------HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  337 RSTKPTTSSALDVSETTLASSEKPwiVPTAKISEDSKVLQPqTATYDVFSSPTTSdepeisdsytatsdrildsIPPKTS 416
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLP--SPWDPADPPAAVLAP-AAALPPAASPAGP-------------------LPPPTS 2833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  417 RTLEQPRATLAPSETPFVPQKLEIFTSPEMQptTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTItPKISKSPEPT 496
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR--RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQ 2910

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  497 WTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPA 576
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

                          330
                   ....*....|....*
gi 1770726290  577 PKDVLLPHKPYPEVS 591
Cdd:PHA03247  2991 SSTPPLTGHSLSRVS 3005
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
674-953 1.03e-04

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.15  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  674 TTTRPTRPKPSGMPSGNGVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGI 753
Cdd:COG3401     48 TKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATT 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  754 ISSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRETDPLGKPRFKGPHVRYIQKPDNS--- 830
Cdd:COG3401    128 ATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTyyy 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  831 -PCSITDSVKRFPKEEATEGNATSPPqNPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEvISRENGSfSGKNKSIQMT 909
Cdd:COG3401    208 rVAATDTGGESAPSNEVSVTTPTTPP-SAPTGLTATADT--PGSVTLSWDPVTESDATGYR-VYRSNSG-DGPFTKVATV 282

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1770726290  910 NQTFSTVENLKPNTSYEFQVKPKNPLG-EGPVSNTVAFSTESADP 953
Cdd:COG3401    283 TTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPP 327
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 117-195 1.22e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


:

Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.83  E-value: 1.22e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290   117 PLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPNDRFYTIRYREKDKEKKWIFQICPA----TETIVENLKPNTVYEF 192
Cdd:smart00060    4 PSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTEYEF 72


                    ...
gi 1770726290   193 GVK 195
Cdd:smart00060   73 RVR 75
 
Name Accession Description Interval E-value
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 857-948 1.09e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 59.05  E-value: 1.09e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  857 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNP 934
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79

                           90
                   ....*....|....
gi 1770726290  935 LGEGPVSNTVAFST 948
Cdd:cd00063     80 GGESPPSESVTVTT 93
PHA03247 PHA03247
large tegument protein UL36; Provisional
 257-591 2.62e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.96  E-value: 2.62e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  257 DSAKSPEKAPlggvilvHLIIPGLNETTVKLPASLMFEISDALKTQLAKNETLALPAESKTPEVEKISARPTTVTPETVP 336
Cdd:PHA03247  2703 PPPPTPEPAP-------HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  337 RSTKPTTSSALDVSETTLASSEKPwiVPTAKISEDSKVLQPqTATYDVFSSPTTSdepeisdsytatsdrildsIPPKTS 416
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLP--SPWDPADPPAAVLAP-AAALPPAASPAGP-------------------LPPPTS 2833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  417 RTLEQPRATLAPSETPFVPQKLEIFTSPEMQptTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTItPKISKSPEPT 496
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR--RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQ 2910

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  497 WTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPA 576
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

                          330
                   ....*....|....*
gi 1770726290  577 PKDVLLPHKPYPEVS 591
Cdd:PHA03247  2991 SSTPPLTGHSLSRVS 3005
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 858-938 2.40e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 52.23  E-value: 2.40e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290   858 PPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV-ISRENGSFSGKNKSIQMTNQTFS-TVENLKPNTSYEFQVKPKNPL 935
Cdd:smart00060    3 PPSNLRVTDVT--STSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSyTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1770726290   936 GEG 938
Cdd:smart00060   81 GEG 83
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 310-577 1.39e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 55.35  E-value: 1.39e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  310 ALPAESKTPEVEKISArPTTVTPETvPRSTKPTTSSALDVSETTLASSEKPWIVPT-AKISEDSKVLQPQTATYDVFSS- 387
Cdd:pfam17823  129 SLPAAIAALPSEAFSA-PRAAACRA-NASAAPRAAIAAASAPHAASPAPRTAASSTtAASSTTAASSAPTTAASSAPATl 206

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  388 -PTTSDEPEISDSYTATSDRILDSIPPKTS--RTLEQPRATLAPSETPFVPQKLEIFTSPEMQPTTPAPQQTTSIPSTPK 464
Cdd:pfam17823  207 tPARGISTAATATGHPAAGTALAAVGNSSPaaGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHM 286

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  465 RRPRPKPPRTKPERTTSAGTIT------PKISKSPEPTwttPAPGKTQFISLKPKIPLSPE---VTHTKPAPKQTPRAP- 534
Cdd:pfam17823  287 PSDTMARNPAAPMGAQAQGPIIqvstdqPVHNTAGEPT---PSPSNTTLEPNTPKSVASTNlavVTTTKAQAKEPSASPv 363

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1770726290  535 PKPKTSPRPRI----PQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAP 577
Cdd:pfam17823  364 PVLHTSMIPEVeatsPTTQPSPLLPTQGAAGPGILLAPEQVATEATA 410
fn3 pfam00041
Fibronectin type III domain;
858-941 8.76e-06

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 45.10  E-value: 8.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  858 PPTNLTVVTVEgcPSFVILDWEKP--LNDTVTEYEVISRENGSFSGKNkSIQMTNQTFS-TVENLKPNTSYEFQVKPKNP 934
Cdd:pfam00041    2 APSNLTVTDVT--STSLTVSWTPPpdGNGPITGYEVEYRPKNSGEPWN-EITVPGTTTSvTLTGLKPGTEYEVRVQAVNG 78


                   ....*..
gi 1770726290  935 LGEGPVS 941
Cdd:pfam00041   79 GGEGPPS 85
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
674-953 1.03e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.15  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  674 TTTRPTRPKPSGMPSGNGVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGI 753
Cdd:COG3401     48 TKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATT 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  754 ISSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRETDPLGKPRFKGPHVRYIQKPDNS--- 830
Cdd:COG3401    128 ATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTyyy 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  831 -PCSITDSVKRFPKEEATEGNATSPPqNPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEvISRENGSfSGKNKSIQMT 909
Cdd:COG3401    208 rVAATDTGGESAPSNEVSVTTPTTPP-SAPTGLTATADT--PGSVTLSWDPVTESDATGYR-VYRSNSG-DGPFTKVATV 282

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1770726290  910 NQTFSTVENLKPNTSYEFQVKPKNPLG-EGPVSNTVAFSTESADP 953
Cdd:COG3401    283 TTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPP 327
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 117-195 1.22e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.83  E-value: 1.22e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290   117 PLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPNDRFYTIRYREKDKEKKWIFQICPA----TETIVENLKPNTVYEF 192
Cdd:smart00060    4 PSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTEYEF 72


                    ...
gi 1770726290   193 GVK 195
Cdd:smart00060   73 RVR 75
fn3 pfam00041
Fibronectin type III domain;
116-195 1.29e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 41.63  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPND-RFYTIRYREKDKEKKWIFQICPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71


                   ...
gi 1770726290  193 GVK 195
Cdd:pfam00041   72 RVQ 74
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
852-996 1.41e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 45.76  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  852 TSPPQnPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV--ISRENGSFSGKNKSIqmtNQTFSTVENLKPNTSYEFQV 929
Cdd:COG3401    324 LTPPA-APSGLTATAVG--SSSITLSWTASSDADVTGYNVyrSTSGGGTYTKIAETV---TTTSYTDTGLTPGTTYYYKV 397

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1770726290  930 KPKNPLG-EGPVSNTVAFSTESADPRVSEPVSAGRDAIWTERPFNSDSYSECKGKQYVKRTWYKKFVG 996
Cdd:COG3401    398 TAVDAAGnESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTG 465
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 422-832 2.89e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 2.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  422 PRATLAPSETPFVPQKLEIFTSPEMQPTTPAP-QQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTP 500
Cdd:PHA03307    49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPaNESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  501 APGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPqtqPVPKVPQrvTAKPKTSPSPEVSYTTPAPKDV 580
Cdd:PHA03307   129 SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL---PLSSPEE--TARAPSSPPAEPPPSTPPAAAS 203

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  581 LLPHKPYPEVS--QSEPAPLETRGIPFIPMISPSPSqeelqttLEETDQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVR 658
Cdd:PHA03307   204 PRPPRRSSPISasASSPAPAPGRSAADDAGASSSDS-------SSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWN 276

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  659 PRTSDKPHIRPvlnRTTTRPTRPKPSGMPSGNGVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPrrkp 738
Cdd:PHA03307   277 GPSSRPGPASS---SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSR---- 349

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  739 lPPNNVTGKPGSAGiisSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRETDPLGKPRFKG 818
Cdd:PHA03307   350 -SPSPSRPPPPADP---SSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425

                          410
                   ....*....|....
gi 1770726290  819 PHVRYiqkPDNSPC 832
Cdd:PHA03307   426 FYARY---PLLTPS 436
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 116-195 4.13e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 40.56  E-value: 4.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  116 KPLQLVVGTLTPSSVFLSWgfliNPHHDWTLPSHcpndrFYTIRYREKDKE--KKWIFQICPATETIVENLKPNTVYEFG 193
Cdd:cd00063      3 PPTNLRVTDVTSTSVTLSW----TPPEDDGGPIT-----GYVVEYREKGSGdwKEVEVTPGSETSYTLTGLKPGTEYEFR 73


                   ..
gi 1770726290  194 VK 195
Cdd:cd00063     74 VR 75
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 490-578 2.90e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 41.37  E-value: 2.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  490 SKSPEPTWTTPAPGKT-----QFISLKPKIPLSP-------EVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQR 557
Cdd:COG3266    255 LKAPSQASSASAPATTslgeqQEVSLPPAVAAQPaaaaaaqPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAA 334

                           90       100
                   ....*....|....*....|.
gi 1770726290  558 VTAkpktsPSPEVSYTTPAPK 578
Cdd:COG3266    335 PAA-----PAPEAAAAAAAPA 350
 
Name Accession Description Interval E-value
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 857-948 1.09e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 59.05  E-value: 1.09e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  857 NPPTNLTVVTVEgcPSFVILDWEKPLNDT--VTEYEVISRENGSFSGKNKSIQMTNQTFSTVENLKPNTSYEFQVKPKNP 934
Cdd:cd00063      2 SPPTNLRVTDVT--STSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79

                           90
                   ....*....|....
gi 1770726290  935 LGEGPVSNTVAFST 948
Cdd:cd00063     80 GGESPPSESVTVTT 93
PHA03247 PHA03247
large tegument protein UL36; Provisional
 257-591 2.62e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.96  E-value: 2.62e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  257 DSAKSPEKAPlggvilvHLIIPGLNETTVKLPASLMFEISDALKTQLAKNETLALPAESKTPEVEKISARPTTVTPETVP 336
Cdd:PHA03247  2703 PPPPTPEPAP-------HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  337 RSTKPTTSSALDVSETTLASSEKPwiVPTAKISEDSKVLQPqTATYDVFSSPTTSdepeisdsytatsdrildsIPPKTS 416
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLP--SPWDPADPPAAVLAP-AAALPPAASPAGP-------------------LPPPTS 2833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  417 RTLEQPRATLAPSETPFVPQKLEIFTSPEMQptTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTItPKISKSPEPT 496
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR--RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQ 2910

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  497 WTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPA 576
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

                          330
                   ....*....|....*
gi 1770726290  577 PKDVLLPHKPYPEVS 591
Cdd:PHA03247  2991 SSTPPLTGHSLSRVS 3005
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 477-684 1.17e-09

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 62.78  E-value: 1.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  477 ERTTSAGTITPKISKSPEPTWTT-----PAPGKTQFISLKPKIPLSPEVthtkPAPKQTPRAPPKPKTSPRPRIPQ---T 548
Cdd:PTZ00449   533 EHEDSKESDEPKEGGKPGETKEGevgkkPGPAKEHKPSKIPTLSKKPEF----PKDPKHPKDPEEPKKPKRPRSAQrptR 608

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  549 QPVPKVPQ--RVTAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRGIPFIPMI--------SPSPSQEEL 618
Cdd:PTZ00449   609 PKSPKLPEllDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFkekfyddyLDAAAKSKE 688

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1770726290  619 QTTLEETDQSTQEPFTTKIPRTTELAKTTQAPhrfYTTVRPRTSDKPHIRPvlnrttTRPTRPKPS 684
Cdd:PTZ00449   689 TKTTVVLDESFESILKETLPETPGTPFTTPRP---LPPKLPRDEEFPFEPI------GDPDAEQPD 745
PHA03247 PHA03247
large tegument protein UL36; Provisional
 324-702 6.80e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 6.80e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  324 SARPTTVTPETVPRSTKPTTSSALDVSETTLASSEKPWIVPT-AKISEDSKVLQPQTATYDvfSSPTTSDEPEISDSYTA 402
Cdd:PHA03247  2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApGRVSRPRRARRLGRAAQA--SSPPQRPRRRAARPTVG 2693

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  403 TSDRILDsiPPKTSRTLE-QPRATLAPSETPFVPQKL-EIFTSPEMQPTTPAPQQTTSIPSTPKRRPRPKPPRTKPERTT 480
Cdd:PHA03247  2694 SLTSLAD--PPPPPPTPEpAPHALVSATPLPPGPAAArQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  481 SAGTITPKISKSPEP---------------------TWTTPAPGKTQFISLKPKIPLSPEVTHTkPAPKQTPRAPPKPKT 539
Cdd:PHA03247  2772 PAAPAAGPPRRLTRPavaslsesreslpspwdpadpPAAVLAPAAALPPAASPAGPLPPPTSAQ-PTAPPPPPGPPPPSL 2850

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  540 SP----------RPRIPQTQPVPKV------PQRVTAKPKTSPSPEvSYTTPAPKdvllPHKPYPEVSQSEPAPLETRGI 603
Cdd:PHA03247  2851 PLggsvapggdvRRRPPSRSPAAKPaaparpPVRRLARPAVSRSTE-SFALPPDQ----PERPPQPQAPPPPQPQPQPPP 2925

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  604 PFIPMISPsPSQEELQTTLEETDQSTQEPFTTKIPRTTELAKTtqAPHRfYTTVRPRTSDKPHIRPVLNRTTTRPTRPKP 683
Cdd:PHA03247  2926 PPQPQPPP-PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL--VPGR-VAVPRFRVPQPAPSREAPASSTPPLTGHSL 3001

                          410       420
                   ....*....|....*....|
gi 1770726290  684 SGMPS-GNGVGTGVKQAPRP 702
Cdd:PHA03247  3002 SRVSSwASSLALHEETDPPP 3021
PHA03247 PHA03247
large tegument protein UL36; Provisional
 409-879 7.78e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 7.78e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  409 DSIPPKTSRTLEQPRATLAPSEtPFVpqkleifTSPEMQPTTPAPQQTTSIPSTPKRRPrpkpprtkpeRTTSAGTITPK 488
Cdd:PHA03247  2558 AAPPAAPDRSVPPPRPAPRPSE-PAV-------TSRARRPDAPPQSARPRAPVDDRGDP----------RGPAPPSPLPP 2619

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  489 ISKSPEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPkqtPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSP 568
Cdd:PHA03247  2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP---GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLT 2696

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  569 EVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLEETDQSTQEPFTTKIPRTTelakttq 648
Cdd:PHA03247  2697 SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP------- 2769

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  649 APHRFYTTVRPRTSDKPHIRPVLNRTTTRPTRPKPSGMP---SGNGVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRP 725
Cdd:PHA03247  2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPaavLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  726 PLP-----------------PRPTHPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPRPTGTPLERIETDIKQPTVP 788
Cdd:PHA03247  2850 LPLggsvapggdvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP 2929

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  789 ASGEELENITDFSSSPTRETDPLGKPRfkgPHVRYIQKPDNSPCSITDSVKRFPkEEATEGNATSPPQNPPTNLTVVTVE 868
Cdd:PHA03247  2930 QPPPPPPPRPQPPLAPTTDPAGAGEPS---GAVPQPWLGALVPGRVAVPRFRVP-QPAPSREAPASSTPPLTGHSLSRVS 3005

                          490
                   ....*....|.
gi 1770726290  869 GCPSFVILDWE 879
Cdd:PHA03247  3006 SWASSLALHEE 3016
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 858-938 2.40e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 52.23  E-value: 2.40e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290   858 PPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV-ISRENGSFSGKNKSIQMTNQTFS-TVENLKPNTSYEFQVKPKNPL 935
Cdd:smart00060    3 PPSNLRVTDVT--STSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSyTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1770726290   936 GEG 938
Cdd:smart00060   81 GEG 83
PHA03247 PHA03247
large tegument protein UL36; Provisional
 422-837 5.06e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 5.06e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  422 PRATLAPSETPFVPQKLEIFTSPEMQPTTPAPQQTTSIPSTPKRRPRPKPPRTKPE--RTTSAGTITPKISKSPEPTWTT 499
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGdpRGPAPPSPLPPDTHAPDPPPPS 2630

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  500 PAPGKTQFISLKPKIPLSPEVTHTKPAPkqtPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPKD 579
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVPPPERPRDDPAP---GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  580 VLLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLEETDQSTQEPFTTKIPRTTelakttqAPHRFYTTVRP 659
Cdd:PHA03247  2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP-------APPAAPAAGPP 2780

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  660 RTSDKPHIRPVLNRTTTRPTRPKPSGMPSgngVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPRRKPL 739
Cdd:PHA03247  2781 RRLTRPAVASLSESRESLPSPWDPADPPA---AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  740 PPNNVT--GKPGSAGIISSGPiTTPPLRSTPRPtgtPLERIETDIKQPtvPASGEELEniTDFSSSPTRETDPLGKPRFK 817
Cdd:PHA03247  2858 PGGDVRrrPPSRSPAAKPAAP-ARPPVRRLARP---AVSRSTESFALP--PDQPERPP--QPQAPPPPQPQPQPPPPPQP 2929

                          410       420
                   ....*....|....*....|
gi 1770726290  818 GPHVRYIQKPDNSPCSITDS 837
Cdd:PHA03247  2930 QPPPPPPPRPQPPLAPTTDP 2949
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 310-577 1.39e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 55.35  E-value: 1.39e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  310 ALPAESKTPEVEKISArPTTVTPETvPRSTKPTTSSALDVSETTLASSEKPWIVPT-AKISEDSKVLQPQTATYDVFSS- 387
Cdd:pfam17823  129 SLPAAIAALPSEAFSA-PRAAACRA-NASAAPRAAIAAASAPHAASPAPRTAASSTtAASSTTAASSAPTTAASSAPATl 206

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  388 -PTTSDEPEISDSYTATSDRILDSIPPKTS--RTLEQPRATLAPSETPFVPQKLEIFTSPEMQPTTPAPQQTTSIPSTPK 464
Cdd:pfam17823  207 tPARGISTAATATGHPAAGTALAAVGNSSPaaGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHM 286

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  465 RRPRPKPPRTKPERTTSAGTIT------PKISKSPEPTwttPAPGKTQFISLKPKIPLSPE---VTHTKPAPKQTPRAP- 534
Cdd:pfam17823  287 PSDTMARNPAAPMGAQAQGPIIqvstdqPVHNTAGEPT---PSPSNTTLEPNTPKSVASTNlavVTTTKAQAKEPSASPv 363

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1770726290  535 PKPKTSPRPRI----PQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAP 577
Cdd:pfam17823  364 PVLHTSMIPEVeatsPTTQPSPLLPTQGAAGPGILLAPEQVATEATA 410
fn3 pfam00041
Fibronectin type III domain;
858-941 8.76e-06

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 45.10  E-value: 8.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  858 PPTNLTVVTVEgcPSFVILDWEKP--LNDTVTEYEVISRENGSFSGKNkSIQMTNQTFS-TVENLKPNTSYEFQVKPKNP 934
Cdd:pfam00041    2 APSNLTVTDVT--STSLTVSWTPPpdGNGPITGYEVEYRPKNSGEPWN-EITVPGTTTSvTLTGLKPGTEYEVRVQAVNG 78


                   ....*..
gi 1770726290  935 LGEGPVS 941
Cdd:pfam00041   79 GGEGPPS 85
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 511-606 3.92e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 47.63  E-value: 3.92e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  511 KPKIPLSPEVTHTKPAPKQTPraPPKPKTSPRpripqtQPVPKVPQRVTAKPKTSPSPEvSYTTPAPKDVLLPHKPYPEV 590
Cdd:PRK14954   375 RNDGGVAPSPAGSPDVKKKAP--EPDLPQPDR------HPGPAKPEAPGARPAELPSPA-SAPTPEQQPPVARSAPLPPS 445

                           90
                   ....*....|....*.
gi 1770726290  591 SQSEPAPLETRGIPFI 606
Cdd:PRK14954   446 PQASAPRNVASGKPGV 461
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 312-688 9.08e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.61  E-value: 9.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  312 PAESKTPEVEKISARPTTVTPETVPRSTKPTTSSALDVSETTLASSEKPWIVPTakisedskvlqPQtatydvfsSPTTS 391
Cdd:PTZ00449   585 PKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPP-----------PQ--------RPSSP 645

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  392 DEPEISDSytatsdrildsipPKTSRTLEQPRAtlapsetPFVPQKLEIFTSPEMQPTTPAPQQTTSIPSTPKRRPrpkp 471
Cdd:PTZ00449   646 ERPEGPKI-------------IKSPKPPKSPKP-------PFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFES---- 701

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  472 prtkperttsagTITPKISKSPEPTWTTPAPgktqfisLKPKIPLSPEVTHTKP----APKQTPRAPPKPKTSPRPRIPQ 547
Cdd:PTZ00449   702 ------------ILKETLPETPGTPFTTPRP-------LPPKLPRDEEFPFEPIgdpdAEQPDDIEFFTPPEEERTFFHE 762

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  548 TQPVPKVPQRVTAKPKTspsPEVSYTTPAPKDvllPHKPYPEVSQSEPAPLETRgiPFIPMISPSPSQEELQTTLEETD- 626
Cdd:PTZ00449   763 TPADTPLPDILAEEFKE---EDIHAETGEPDE---AMKRPDSPSEHEDKPPGDH--PSLPKKRHRLDGLALSTTDLESDa 834

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  627 -----QSTQEPFTTKIPRT-TELAKTTQAPH---------------------------RFYTTVRPRTSDKPHIRPVLNR 673
Cdd:PTZ00449   835 griakDASGKIVKLKRSKSfDDLTTVEEAEEmgaearkivvdddgteaddedthppeeKHKSEVRRRRPPKKPSKPKKPS 914

                          410
                   ....*....|....*
gi 1770726290  674 TTTRPTRPKPSGMPS 688
Cdd:PTZ00449   915 KPKKPKKPDSAFIPS 929
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
674-953 1.03e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.15  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  674 TTTRPTRPKPSGMPSGNGVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGI 753
Cdd:COG3401     48 TKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATT 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  754 ISSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRETDPLGKPRFKGPHVRYIQKPDNS--- 830
Cdd:COG3401    128 ATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTyyy 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  831 -PCSITDSVKRFPKEEATEGNATSPPqNPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEvISRENGSfSGKNKSIQMT 909
Cdd:COG3401    208 rVAATDTGGESAPSNEVSVTTPTTPP-SAPTGLTATADT--PGSVTLSWDPVTESDATGYR-VYRSNSG-DGPFTKVATV 282

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1770726290  910 NQTFSTVENLKPNTSYEFQVKPKNPLG-EGPVSNTVAFSTESADP 953
Cdd:COG3401    283 TTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPP 327
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 117-195 1.22e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.83  E-value: 1.22e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290   117 PLQLVVGTLTPSSVFLSWgflinphhdwtLPSHCPNDRFYTIRYREKDKEKKWIFQICPA----TETIVENLKPNTVYEF 192
Cdd:smart00060    4 PSNLRVTDVTSTSVTLSW-----------EPPPDDGITGYIVGYRVEYREEGSEWKEVNVtpssTSYTLTGLKPGTEYEF 72


                    ...
gi 1770726290   193 GVK 195
Cdd:smart00060   73 RVR 75
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 478-594 1.25e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 45.96  E-value: 1.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  478 RTTSAGT-------ITPKISKSPEPTWTTPAPGktqfislkpkiplSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQP 550
Cdd:PRK14950   342 RTTSYGQlplelavIEALLVPVPAPQPAKPTAA-------------APSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT 408

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1770726290  551 VPKVPQRVTAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSE 594
Cdd:PRK14950   409 PPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 484-619 1.29e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 46.23  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  484 TITPKISKSPEPTWTTPAPGKTQFISLKP-KIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPrIPQTQPVPKVPQRVTAKP 562
Cdd:PRK10263   368 TGEPVIAPAPEGYPQQSQYAQPAVQYNEPlQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP-AQQPYYAPAPEQPVAGNA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1770726290  563 KTSPSPEVSYttpAPKDVLLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQ 619
Cdd:PRK10263   447 WQAEEQQSTF---APQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETK 500
fn3 pfam00041
Fibronectin type III domain;
116-195 1.29e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 41.63  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  116 KPLQLVVGTLTPSSVFLSWgflinphhdwTLPSHCPND-RFYTIRYREKDKEKKWIFQICPATET--IVENLKPNTVYEF 192
Cdd:pfam00041    2 APSNLTVTDVTSTSLTVSW----------TPPPDGNGPiTGYEVEYRPKNSGEPWNEITVPGTTTsvTLTGLKPGTEYEV 71


                   ...
gi 1770726290  193 GVK 195
Cdd:pfam00041   72 RVQ 74
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
852-996 1.41e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 45.76  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  852 TSPPQnPPTNLTVVTVEgcPSFVILDWEKPLNDTVTEYEV--ISRENGSFSGKNKSIqmtNQTFSTVENLKPNTSYEFQV 929
Cdd:COG3401    324 LTPPA-APSGLTATAVG--SSSITLSWTASSDADVTGYNVyrSTSGGGTYTKIAETV---TTTSYTDTGLTPGTTYYYKV 397

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1770726290  930 KPKNPLG-EGPVSNTVAFSTESADPRVSEPVSAGRDAIWTERPFNSDSYSECKGKQYVKRTWYKKFVG 996
Cdd:COG3401    398 TAVDAAGnESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTG 465
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 372-703 1.59e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.85  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  372 SKVLQPQTATYDVFSSPTTSDEP--------EISDSYTATSDRILDSIP-PKTSRTLEQPRATLAPSETPFVPQKLeIFT 442
Cdd:PRK10263   297 NRATQPEYDEYDPLLNGAPITEPvavaaaatTATQSWAAPVEPVTQTPPvASVDVPPAQPTVAWQPVPGPQTGEPV-IAP 375

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  443 SPEM---QPTTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEptWTTPAPGKTQFISLKPKIPLSPE 519
Cdd:PRK10263   376 APEGypqQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQ--QPYYAPAPEQPVAGNAWQAEEQQ 453

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  520 vTHTKPAPKQTPRappKPKTSPRPRIPQTQPVPKVPQrvtaKPKTSPSPEVSYTTPAPKdvllPHKPYPEVSQSEPAPLE 599
Cdd:PRK10263   454 -STFAPQSTYQTE---QTYQQPAAQEPLYQQPQPVEQ----QPVVEPEPVVEETKPARP----PLYYFEEVEEKRARERE 521

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  600 TRGIPFIPMisPSPSQEElqttlEETDQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHIRPVLNRTTTRPT 679
Cdd:PRK10263   522 QLAAWYQPI--PEPVKEP-----EPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGP 594

                          330       340
                   ....*....|....*....|....
gi 1770726290  680 RPKPSgmpsgNGVGtgvKQAPRPS 703
Cdd:PRK10263   595 RPQVK-----EGIG---PQLPRPK 610
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 422-832 2.89e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 2.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  422 PRATLAPSETPFVPQKLEIFTSPEMQPTTPAP-QQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTP 500
Cdd:PHA03307    49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPaNESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  501 APGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPqtqPVPKVPQrvTAKPKTSPSPEVSYTTPAPKDV 580
Cdd:PHA03307   129 SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL---PLSSPEE--TARAPSSPPAEPPPSTPPAAAS 203

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  581 LLPHKPYPEVS--QSEPAPLETRGIPFIPMISPSPSqeelqttLEETDQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVR 658
Cdd:PHA03307   204 PRPPRRSSPISasASSPAPAPGRSAADDAGASSSDS-------SSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWN 276

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  659 PRTSDKPHIRPvlnRTTTRPTRPKPSGMPSGNGVGTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPTHPrrkp 738
Cdd:PHA03307   277 GPSSRPGPASS---SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSR---- 349

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  739 lPPNNVTGKPGSAGiisSGPITTPPLRSTPRPTGTPLERIETDIKQPTVPASGEELENITDFSSSPTRETDPLGKPRFKG 818
Cdd:PHA03307   350 -SPSPSRPPPPADP---SSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425

                          410
                   ....*....|....
gi 1770726290  819 PHVRYiqkPDNSPC 832
Cdd:PHA03307   426 FYARY---PLLTPS 436
DUF4813 pfam16072
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ...
 493-623 3.19e-04

Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.


Pssm-ID: 435117 [Multi-domain]  Cd Length: 288  Bit Score: 43.98  E-value: 3.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  493 PEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSY 572
Cdd:pfam16072  146 PGSVTTTSAGSGTTVINAGGQQPAAPAAPAYPVAPAAYPAQAPAAAPAPAPGAPQTPLAPLNPVAAAPAAAAGAAAAPVV 225

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1770726290  573 TTPAPKDVlLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLE 623
Cdd:pfam16072  226 AAAAPAAA-APPPPAPAAPPADAAPPAPGGIICVPVRVPEPDPKDATKTIE 275
PHA03378 PHA03378
EBNA-3B; Provisional
 312-566 3.38e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.67  E-value: 3.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  312 PAESKTPEVEKISARPTTVTPETVPRstkPTTSSALDVSETTLASSEKPWIVPTAKISEDSKVLQPQTATYDVFSSPTTS 391
Cdd:PHA03378   576 PLTSPTTSQLASSAPSYAQTPWPVPH---PSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPH 652

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  392 DEPEISDSYTATSDRILDSIPPKTSRTleQPRATLAPSETPfvpqkleifTSPEMQPTTPAPQQTTSIPSTPKRRPRPKP 471
Cdd:PHA03378   653 QPPQVEITPYKPTWTQIGHIPYQPSPT--GANTMLPIQWAP---------GTMQPPPRAPTPMRPPAAPPGRAQRPAAAT 721

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  472 PRTKPERTTSAGTITPKISKSPEPTwTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPV 551
Cdd:PHA03378   722 GRARPPAAAPGRARPPAAAPGRARP-PAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP 800

                          250
                   ....*....|....*
gi 1770726290  552 PKVPQRVTAKPKTSP 566
Cdd:PHA03378   801 QAGPTSMQLMPRAAP 815
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 116-195 4.13e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 40.56  E-value: 4.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  116 KPLQLVVGTLTPSSVFLSWgfliNPHHDWTLPSHcpndrFYTIRYREKDKE--KKWIFQICPATETIVENLKPNTVYEFG 193
Cdd:cd00063      3 PPTNLRVTDVTSTSVTLSW----TPPEDDGGPIT-----GYVVEYREKGSGdwKEVEVTPGSETSYTLTGLKPGTEYEFR 73


                   ..
gi 1770726290  194 VK 195
Cdd:cd00063     74 VR 75
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 314-836 5.44e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 44.37  E-value: 5.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  314 ESKTPEVEKISARPTTVTPETVPRSTKPTTSSALDVSETTLASSEKpwivptAKISEDSKVLQPQTATYDVFSSPTTSDE 393
Cdd:pfam03154   56 DSKAESMKKSSKKIKEEAPSPLKSAKRQREKGASDTEEPERATAKK------SKTQEISRPNSPSEGEGESSDGRSVNDE 129

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  394 peisdsyTATSDRILDSIPPKTSRTLEQPRATLAPSETPFVPQKLeiftspemQPTTPAPQQTTSIPSTPKRRPRPKPPR 473
Cdd:pfam03154  130 -------GSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQIL--------QTQPPVLQAQSGAASPPSPPPPGTTQA 194

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  474 TKPERTTSAGTITPKIS--KSPEPTWTTPAPGKTQFISLKPKIPlSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQ-- 549
Cdd:pfam03154  195 ATAGPTPSAPSVPPQGSpaTSQPPNQTQSTAAPHTLIQQTPTLH-PQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLhg 273

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  550 PVPKVPQRVTAKPKTSPSPevsyTTPAPkdvlLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLEETDQS- 628
Cdd:pfam03154  274 QMPPMPHSLQTGPSHMQHP----VPPQP----FPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPl 345

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  629 ---------TQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHiRPVLNRTTTRPTRPKPSG-------MPSGNGV 692
Cdd:pfam03154  346 ppaplsmphIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPP-PPALKPLSSLSTHHPPSAhppplqlMPQSQQL 424

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  693 GTGVKQAPRPSGADRNVSVDSTHPTKKPGTRRPPLPPRPT-----HPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRST 767
Cdd:pfam03154  425 PPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQhpfvpGGPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSG 504

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1770726290  768 PRPTGTPLERIETDIKQPTvPASGEELENITDFSSSPTRETDPLGKPRFKGPHVRYIQKPDN--SPCSITD 836
Cdd:pfam03154  505 PVPAAVSCPLPPVQIKEEA-LDEAEEPESPPPPPRSPSPEPTVVNTPSHASQSARFYKHLDRgyNSCARTD 574
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 310-774 5.77e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.14  E-value: 5.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  310 ALPAESKTPEVEKISARPTTVTPETVPRSTKPTTSSALDVSETTLASsekpwivPTAKISEDSKVLQPQTATYDVFSSPT 389
Cdd:pfam05109  395 GLGTAPKTLIITRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFAA-------PNTTTGLPSSTHVPTNLTAPASTGPT 467

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  390 TSDEPEISDSYTATSDRILDSIPPKTsrtleqPRATLAPSETPFVpqkleifTSPEMQPTTPAPQQTTSIPSTPKRRPRP 469
Cdd:pfam05109  468 VSTADVTSPTPAGTTSGASPVTPSPS------PRDNGTESKAPDM-------TSPTSAVTTPTPNATSPTPAVTTPTPNA 534

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  470 KPPRTKPERTTSAGTITPKISKSPEPTWTTPAPGKTqfisLKPKIPLSPEVTHTKPAPKQTprAPPKPKTSPRPRIP-QT 548
Cdd:pfam05109  535 TSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNAT----IPTLGKTSPTSAVTTPTPNAT--SPTVGETSPQANTTnHT 608

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  549 QPVPKVPQRVTAKPKTSPSP----EVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEELQTTLEE 624
Cdd:pfam05109  609 LGGTSSTPVVTSPPKNATSAvttgQHNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPAS 688

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  625 TdqSTQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHIRPVLNRTTTRPTRPKPSGMPSGNGVGTGVKQAPRPSG 704
Cdd:pfam05109  689 T--STHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKH 766

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  705 ADRNVSVDSTHPTkkPGTRRPPLPPRPTHPRRKPLPPNNvTGKPGSAGIISSGPITTPPLRSTPRPTGTP 774
Cdd:pfam05109  767 TTGHGARTSTEPT--TDYGGDSTTPRTRYNATTYLPPST-SSKLRPRWTFTSPPVTTAQATVPVPPTSQP 833
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
449-662 8.70e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 8.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  449 TTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPK 528
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  529 QTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPevSYTTPAPKDVLLPHKPYPEVSQSEPApletrgipfipm 608
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP--ADDDPPPWEELPPEFASPAPAQPDAA------------ 517

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1770726290  609 ispsPSQEELQTTLEETDQSTQEPFTTKIPRTT--ELAKTTQAPHRFYTTVRPRTS 662
Cdd:PRK12323   518 ----PAGWVAESIPDPATADPDDAFETLAPAPAaaPAPRAAAATEPVVAPRPPRAS 569
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 416-682 9.77e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.52  E-value: 9.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  416 SRTLEQPRATLAPSETPFVPQKLEIFTSPEMQPTT-PAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPE 494
Cdd:PTZ00449   537 SKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKiPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPE 616

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  495 PTwTTPAPGKTQFISLKPKIPLSPevthTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRV----------TAKPKT 564
Cdd:PTZ00449   617 LL-DIPKSPKRPESPKSPKRPPPP----QRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFyddyldaaakSKETKT 691

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  565 SPSPEVSYTT-------PAPKDVLLPHKPYPEVSQSEPA-PLETRGIPFIPmiSPSPSQ-----EELQTTLEETDQSTQE 631
Cdd:PTZ00449   692 TVVLDESFESilketlpETPGTPFTTPRPLPPKLPRDEEfPFEPIGDPDAE--QPDDIEfftppEEERTFFHETPADTPL 769

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1770726290  632 P-FTTKIPRTTELAKTTQAPHRfyTTVRPRTSDKPHIRPvlnrTTTRPTRPK 682
Cdd:PTZ00449   770 PdILAEEFKEEDIHAETGEPDE--AMKRPDSPSEHEDKP----PGDHPSLPK 815
PRK11633 PRK11633
cell division protein DedD; Provisional
 490-578 1.31e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.53  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  490 SKSPEPTWTTPAPGKTQFISLKPKIPLSPEVThtkPAPKQTPRAPPKPKtsPRPRiPQTQPVPKVPQRVTAKPKTSPSPE 569
Cdd:PRK11633    65 TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTP---VEPEPAPVEPPKPK--PVEK-PKPKPKPQQKVEAPPAPKPEPKPV 138


                   ....*....
gi 1770726290  570 VSyTTPAPK 578
Cdd:PRK11633   139 VE-EKAAPT 146
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 333-719 1.44e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 42.64  E-value: 1.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  333 ETVPRSTKpTTSSALDVSETTLASSEKPWIVPTAKISEDS-KVLQPQTATYDVFSSPTTSDEPeiSDSYTATSDRILDSI 411
Cdd:pfam17823   45 DAVPRADN-KSSEQ*NFCAATAAPAPVTLTKGTSAAHLNStEVTAEHTPHGTDLSEPATREGA--ADGAASRALAAAASS 121

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  412 PPKTSRTLEQPRATLAPSETPFVPQKLEIFTSPEMQPTTPApqQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISK 491
Cdd:pfam17823  122 SPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAI--AAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAA 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  492 SPEPTWTTPAPGkTQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIPQTqpVPKVPQRVTAKPKTSPSPEVS 571
Cdd:pfam17823  200 SSAPATLTPARG-ISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALAT--LAAAAGTVASAAGTINMGDPH 276

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  572 YTTPAPKDvllpHKPYPEVSQSEPAPL--ETRGipfiPMISPSPSQEELQTTLEET---DQSTQEPFTTKIPRTTELAKT 646
Cdd:pfam17823  277 ARRLSPAK----HMPSDTMARNPAAPMgaQAQG----PIIQVSTDQPVHNTAGEPTpspSNTTLEPNTPKSVASTNLAVV 348

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1770726290  647 T----QAPHRFYTTVR-PRTSDKPHIRpvlnrtTTRPTrPKPSGMPSGNGV-GTGVKQAPRPSGADRNVSVDSTHPTKK 719
Cdd:pfam17823  349 TttkaQAKEPSASPVPvLHTSMIPEVE------ATSPT-TQPSPLLPTQGAaGPGILLAPEQVATEATAGTASAGPTPR 420
PHA03369 PHA03369
capsid maturational protease; Provisional
 496-588 2.82e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 41.52  E-value: 2.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  496 TWTTPAPGKTQFISLKPKIPLSPEvTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPkVPQRVTAKPKTSPSPEVSYTTP 575
Cdd:PHA03369   350 TASLTAPSRVLAAAAKVAVIAAPQ-THTGPADRQRPQRPDGIPYSVPARSPMTAYPP-VPQFCGDPGLVSPYNPQSPGTS 427

                           90
                   ....*....|...
gi 1770726290  576 APKDVLLPHKPYP 588
Cdd:PHA03369   428 YGPEPVGPVPPQP 440
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 490-578 2.90e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 41.37  E-value: 2.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  490 SKSPEPTWTTPAPGKT-----QFISLKPKIPLSP-------EVTHTKPAPKQTPRAPPKPKTSPRPRIPQTQPVPKVPQR 557
Cdd:COG3266    255 LKAPSQASSASAPATTslgeqQEVSLPPAVAAQPaaaaaaqPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAA 334

                           90       100
                   ....*....|....*....|.
gi 1770726290  558 VTAkpktsPSPEVSYTTPAPK 578
Cdd:COG3266    335 PAA-----PAPEAAAAAAAPA 350
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
424-613 3.76e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  424 ATLAPSETPFVPQKLEIFTSPEMQPTTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTPAPG 503
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  504 KTqfislkpkiPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIP--QTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPKDVL 581
Cdd:PRK12323   452 PA---------PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1770726290  582 LPHKPYPEVSQSEP-----------APLETRGIPFIPMISPSP 613
Cdd:PRK12323   523 AESIPDPATADPDDafetlapapaaAPAPRAAAATEPVVAPRP 565
Orthopox_A5L pfam06193
Orthopoxvirus A5L protein-like; This family includes several Orthopoxvirus A5L proteins. The ...
 477-642 4.12e-03

Orthopoxvirus A5L protein-like; This family includes several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion.


Pssm-ID: 283778 [Multi-domain]  Cd Length: 216  Bit Score: 39.96  E-value: 4.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  477 ERTTSAGTITPKISKSPEPTWTTPAPGKTQFISLKPKIP--LSPEVTHTKP-APKQTPRAPPKPKTSPRP-RIPQTQPVP 552
Cdd:pfam06193   13 EDATAKNSAYYSEEDDLDILGKKDEAGEIGFESQERQYQqqLIEQLAKDNMlAASRQPIQPLQPTIHITPiEIPTPAPTP 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  553 KVPQRVTAKPKTSPSPEVSYTTPAPKDVLLPHKPYPEVSQSEPAPLETRgIPFIPMISPSP---SQEELQTTLEETDQST 629
Cdd:pfam06193   93 KPRQQELGTPSTSCTQNSDASIACSTDIVTPPQPPIVATVCTPTPTDGR-ICTTADQNPNPgatIQKELDNMALKDLMSS 171

                          170
                   ....*....|...
gi 1770726290  630 QEPFTTKIPRTTE 642
Cdd:pfam06193  172 VEKDMCQLQAESE 184
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 448-706 4.72e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.07  E-value: 4.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  448 PTTPAPQQTTSIPSTPKRRprpkpprtkpERTTSAGTITPKISKSPEPTWTTPAPGKTqfislkpkiPLSPEVTHTKPAP 527
Cdd:PLN03209   312 PLTPMEELLAKIPSQRVPP----------KESDAADGPKPVPTKPVTPEAPSPPIEEE---------PPQPKAVVPRPLS 372

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  528 KQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPApkdvllphkpypeVSQSEPAPLETRGI---- 603
Cdd:PLN03209   373 PYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASN-------------VPEVEPAQVEAKKTrpls 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  604 PFI------PMISPSPSQEE-LQTTLEETDQSTQEPFTTKIPRTTELAKTTQAPHRFYTTVRPRTSDKPHIRPvlnrttt 676
Cdd:PLN03209   440 PYAryedlkPPTSPSPTAPTgVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSP------- 512

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1770726290  677 RPTRPKPSGMP-SGNGVGTGVKQAPRPSGAD 706
Cdd:PLN03209   513 SPAAPVGKVAPsSTNEVVKVGNSAPPTALAD 543
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 480-581 5.19e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.95  E-value: 5.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  480 TSAGTITPKiSKSPEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPR--APPKPKTSPRPRIPQTQPVPKVPQR 557
Cdd:PRK14950   364 PAPQPAKPT-AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRpvAPPVPHTPESAPKLTRAAIPVDEKP 442

                           90       100
                   ....*....|....*....|....
gi 1770726290  558 VTAKPktSPSPEVSYTTPAPKDVL 581
Cdd:PRK14950   443 KYTPP--APPKEEEKALIADGDVL 464
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 486-617 6.41e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 6.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726290  486 TPKISKSPEPTWTTPA-PGKTQFISLKPKIPLSPEVTHTKPAPKQTPR---APPKPKTSPRPRIPQTQPvPKVPQRVTAK 561
Cdd:PRK10263   754 QPQQPVAPQQQYQQPQqPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQpqyQQPQQPVAPQPQYQQPQQ-PVAPQPQYQQ 832

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1770726290  562 PKTSPSpevsyttPAPKDVLLpHKPYPEVSQSEPAPLETRGIPFIPMISPSPSQEE 617
Cdd:PRK10263   833 PQQPVA-------PQPQDTLL-HPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVE 880
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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