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Conserved domains on  [gi|1759508340|dbj|GER94891|]
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hypothetical protein A45J_2657 [hot springs metagenome]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_5 super family cl46762
CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins ...
 8-50 7.36e-07

CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.


The actual alignment was detected with superfamily member COG4877:

Pssm-ID: 481102  Cd Length: 62  Bit Score: 41.43  E-value: 7.36e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1759508340  8 KHISLRLPDELHKQIKNQAEAEQRSLHGQIIYLLSSSCAAHSR 50
Cdd:COG4877    5 KQFLLRIDPALYEALERWAADELRSVNAQIEYLLREALRKAGR 47
 
Name Accession Description Interval E-value
COG4877 COG4877
Uncharacterized conserved protein [Function unknown];
8-50 7.36e-07

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443905  Cd Length: 62  Bit Score: 41.43  E-value: 7.36e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1759508340  8 KHISLRLPDELHKQIKNQAEAEQRSLHGQIIYLLSSSCAAHSR 50
Cdd:COG4877    5 KQFLLRIDPALYEALERWAADELRSVNAQIEYLLREALRKAGR 47
mnt PHA01513
Mnt
 9-44 5.40e-04

Mnt


Pssm-ID: 164855 [Multi-domain]  Cd Length: 82  Bit Score: 34.57  E-value: 5.40e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1759508340  9 HISLRLPDELHKQIKNQAEAEQRSLHGQIIYLLSSS 44
Cdd:PHA01513   7 QFNLRLPYELKEKLKQRAKANGRSLNAELVQIVQDA 42
 
Name Accession Description Interval E-value
COG4877 COG4877
Uncharacterized conserved protein [Function unknown];
8-50 7.36e-07

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443905  Cd Length: 62  Bit Score: 41.43  E-value: 7.36e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1759508340  8 KHISLRLPDELHKQIKNQAEAEQRSLHGQIIYLLSSSCAAHSR 50
Cdd:COG4877    5 KQFLLRIDPALYEALERWAADELRSVNAQIEYLLREALRKAGR 47
mnt PHA01513
Mnt
 9-44 5.40e-04

Mnt


Pssm-ID: 164855 [Multi-domain]  Cd Length: 82  Bit Score: 34.57  E-value: 5.40e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1759508340  9 HISLRLPDELHKQIKNQAEAEQRSLHGQIIYLLSSS 44
Cdd:PHA01513   7 QFNLRLPYELKEKLKQRAKANGRSLNAELVQIVQDA 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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