NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1756480361|gb|QFF92213|]
View 

23.3 kDa protein [Human adenovirus E4]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Adeno_E3 pfam06040
Adenovirus E3 protein; This family consists of several Adenovirus E3 proteins. The E3 protein ...
76-209 1.96e-60

Adenovirus E3 protein; This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions.


:

Pssm-ID: 253527  Cd Length: 126  Bit Score: 185.09  E-value: 1.96e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480361  76 LNGPANLTFStrrskLLLFRPFLPGIYQCVSGpcHHTFHLIPNTTYSPAPLPTNN-QTNHHQRYRRDLVESNTT-HTGGE 153
Cdd:pfam06040   1 IKTELRLSYG-----LPLLQPGLYNTYQCVQK--HHTFPLIPNTTNSTFPLPTNKlQTNLHHRFSRSLFESNTTtKTGGE 73
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1756480361 154 LRGPQSSGiyygPWEVVGLIALGLVAGGL-LALCYLYLPCFSYLVVLCCWFKKWGRS 209
Cdd:pfam06040  74 LRGLPTSG----PWVVAGLVTLGLVAGGLvLILCYLYTPCFSYLVVLCCWFKKWGPY 126
adenoE3CR1rpt TIGR04241
mastadenovirus E3 CR1-alpha-1; This domain occurs only in the adenovirus E3 region CR1-alpha-1 ...
34-116 2.59e-24

mastadenovirus E3 CR1-alpha-1; This domain occurs only in the adenovirus E3 region CR1-alpha-1 protein. It may occur once, twice, or three times.


:

Pssm-ID: 211964  Cd Length: 81  Bit Score: 91.29  E-value: 2.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480361  34 LTFTGNETELHLQCKPHKKYLTWLYQGFPFAvvnHCYNDGVLLNGPANLTFSTRRSKLLLFRPFLPGIYQCVSGPCHHTF 113
Cdd:TIGR04241   2 LYFTNSTTNITLNCSCFSTYILWTFNNSSCA---TYDNDGVLLPNNLSLTFSASSQKLTLFPPFVPGTYTCQAGPCQHTF 78

                  ...
gi 1756480361 114 HLI 116
Cdd:TIGR04241  79 KLV 81
 
Name Accession Description Interval E-value
Adeno_E3 pfam06040
Adenovirus E3 protein; This family consists of several Adenovirus E3 proteins. The E3 protein ...
76-209 1.96e-60

Adenovirus E3 protein; This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions.


Pssm-ID: 253527  Cd Length: 126  Bit Score: 185.09  E-value: 1.96e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480361  76 LNGPANLTFStrrskLLLFRPFLPGIYQCVSGpcHHTFHLIPNTTYSPAPLPTNN-QTNHHQRYRRDLVESNTT-HTGGE 153
Cdd:pfam06040   1 IKTELRLSYG-----LPLLQPGLYNTYQCVQK--HHTFPLIPNTTNSTFPLPTNKlQTNLHHRFSRSLFESNTTtKTGGE 73
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1756480361 154 LRGPQSSGiyygPWEVVGLIALGLVAGGL-LALCYLYLPCFSYLVVLCCWFKKWGRS 209
Cdd:pfam06040  74 LRGLPTSG----PWVVAGLVTLGLVAGGLvLILCYLYTPCFSYLVVLCCWFKKWGPY 126
adenoE3CR1rpt TIGR04241
mastadenovirus E3 CR1-alpha-1; This domain occurs only in the adenovirus E3 region CR1-alpha-1 ...
34-116 2.59e-24

mastadenovirus E3 CR1-alpha-1; This domain occurs only in the adenovirus E3 region CR1-alpha-1 protein. It may occur once, twice, or three times.


Pssm-ID: 211964  Cd Length: 81  Bit Score: 91.29  E-value: 2.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480361  34 LTFTGNETELHLQCKPHKKYLTWLYQGFPFAvvnHCYNDGVLLNGPANLTFSTRRSKLLLFRPFLPGIYQCVSGPCHHTF 113
Cdd:TIGR04241   2 LYFTNSTTNITLNCSCFSTYILWTFNNSSCA---TYDNDGVLLPNNLSLTFSASSQKLTLFPPFVPGTYTCQAGPCQHTF 78

                  ...
gi 1756480361 114 HLI 116
Cdd:TIGR04241  79 KLV 81
 
Name Accession Description Interval E-value
Adeno_E3 pfam06040
Adenovirus E3 protein; This family consists of several Adenovirus E3 proteins. The E3 protein ...
76-209 1.96e-60

Adenovirus E3 protein; This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions.


Pssm-ID: 253527  Cd Length: 126  Bit Score: 185.09  E-value: 1.96e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480361  76 LNGPANLTFStrrskLLLFRPFLPGIYQCVSGpcHHTFHLIPNTTYSPAPLPTNN-QTNHHQRYRRDLVESNTT-HTGGE 153
Cdd:pfam06040   1 IKTELRLSYG-----LPLLQPGLYNTYQCVQK--HHTFPLIPNTTNSTFPLPTNKlQTNLHHRFSRSLFESNTTtKTGGE 73
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1756480361 154 LRGPQSSGiyygPWEVVGLIALGLVAGGL-LALCYLYLPCFSYLVVLCCWFKKWGRS 209
Cdd:pfam06040  74 LRGLPTSG----PWVVAGLVTLGLVAGGLvLILCYLYTPCFSYLVVLCCWFKKWGPY 126
adenoE3CR1rpt TIGR04241
mastadenovirus E3 CR1-alpha-1; This domain occurs only in the adenovirus E3 region CR1-alpha-1 ...
34-116 2.59e-24

mastadenovirus E3 CR1-alpha-1; This domain occurs only in the adenovirus E3 region CR1-alpha-1 protein. It may occur once, twice, or three times.


Pssm-ID: 211964  Cd Length: 81  Bit Score: 91.29  E-value: 2.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480361  34 LTFTGNETELHLQCKPHKKYLTWLYQGFPFAvvnHCYNDGVLLNGPANLTFSTRRSKLLLFRPFLPGIYQCVSGPCHHTF 113
Cdd:TIGR04241   2 LYFTNSTTNITLNCSCFSTYILWTFNNSSCA---TYDNDGVLLPNNLSLTFSASSQKLTLFPPFVPGTYTCQAGPCQHTF 78

                  ...
gi 1756480361 114 HLI 116
Cdd:TIGR04241  79 KLV 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH