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Conserved domains on  [gi|1756480350|gb|QFF92202|]
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penton protein [Human adenovirus E4]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Adeno_Penton_B super family cl03311
Adenovirus penton base protein; This family consists of various adenovirus penton base ...
45-535 0e+00

Adenovirus penton base protein; This family consists of various adenovirus penton base proteins, from both the Mastadenoviradae having mammalian hosts and the Aviadenoviradae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two.


The actual alignment was detected with superfamily member pfam01686:

Pssm-ID: 396312  Cd Length: 450  Bit Score: 708.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350  45 TEGRNSIRYSELTPLYDTTRLYLVDNKSADIASLNYQNDHSNFLTTVVQNNDFTPTEASTQTINFDERSRWGGQLKTIMH 124
Cdd:pfam01686   1 TGGRNSIRYGNLAPLQDTTKVFFVDNKSSDIDSYNQQNDHSNFFTTVIQNQDLNPEEASTQTIILDERSRWGGDLKTITK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 125 TNMPNVNQFMYSNKFKARVMVSRktpngvtvgDNYDGSQDELKYEWVEFELPEGNFSVTMTIDLMNNAIIDNYLAVGRQN 204
Cdd:pfam01686  81 TNCPNVSEFFQSNSFKVRLMVDR---------NLTKDKPVKEKYEWVDLTIPEGNYVLNEVIDLLNEGIVQIYLAVGRQN 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 205 GVLESDIGVKFDTRNFRLGWDPVTELVMPGVYTNEAFHPDIVLLPGCGVDFTESRLSNLLGIRKRQPFQEGFQIMYEDLD 284
Cdd:pfam01686 152 GVLESDIGVKFDTRYFFLGRDPVTGLVTPGAYVYKGYHPDIILLPGCAVDFTKSRLSNLLGIRKRDPYTKGFIITYEDLQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 285 GGNIPALLDVEAYEKSKEEsvaaattavatastevrddnfasaaavaavkaDETKSKIVIQPVEKDSKERSYNVLSDKKN 364
Cdd:pfam01686 232 GGNIPALLDLKKYQQSGED--------------------------------EKPQKKPVISPLLQDSKGRSYNVIGEPGT 279
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 365 --TAYRSWYLAYNygDRDKGVRSWTLLTTSDVTCGVEQVYWSLPDMMQDPVTFRSTHQVSNYPVVGAELLPVYSKSFFNE 442
Cdd:pfam01686 280 ypTLYRSWLLAYL--NNQSGARKNTLLTVPDITGGIGQLYWSLPDTFKAPVTFKMTQKVEMSPVVGTQLFPLIGKSFYNG 357
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 443 QAVYSQQLRAFTSLTHVFNRFPENQILVRPPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYVYKAL 522
Cdd:pfam01686 358 ASVYSQLIEQATSSTHVFNRFPENQILMQAPCMNVTLVSENVPAVTDQGTLPLKNSIPGVQRVTITDDRRRPCPYVYKSI 437
                         490
                  ....*....|...
gi 1756480350 523 GIVAPRVLSSRTF 535
Cdd:pfam01686 438 ATVQPRVLSSATL 450
 
Name Accession Description Interval E-value
Adeno_Penton_B pfam01686
Adenovirus penton base protein; This family consists of various adenovirus penton base ...
45-535 0e+00

Adenovirus penton base protein; This family consists of various adenovirus penton base proteins, from both the Mastadenoviradae having mammalian hosts and the Aviadenoviradae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two.


Pssm-ID: 396312  Cd Length: 450  Bit Score: 708.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350  45 TEGRNSIRYSELTPLYDTTRLYLVDNKSADIASLNYQNDHSNFLTTVVQNNDFTPTEASTQTINFDERSRWGGQLKTIMH 124
Cdd:pfam01686   1 TGGRNSIRYGNLAPLQDTTKVFFVDNKSSDIDSYNQQNDHSNFFTTVIQNQDLNPEEASTQTIILDERSRWGGDLKTITK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 125 TNMPNVNQFMYSNKFKARVMVSRktpngvtvgDNYDGSQDELKYEWVEFELPEGNFSVTMTIDLMNNAIIDNYLAVGRQN 204
Cdd:pfam01686  81 TNCPNVSEFFQSNSFKVRLMVDR---------NLTKDKPVKEKYEWVDLTIPEGNYVLNEVIDLLNEGIVQIYLAVGRQN 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 205 GVLESDIGVKFDTRNFRLGWDPVTELVMPGVYTNEAFHPDIVLLPGCGVDFTESRLSNLLGIRKRQPFQEGFQIMYEDLD 284
Cdd:pfam01686 152 GVLESDIGVKFDTRYFFLGRDPVTGLVTPGAYVYKGYHPDIILLPGCAVDFTKSRLSNLLGIRKRDPYTKGFIITYEDLQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 285 GGNIPALLDVEAYEKSKEEsvaaattavatastevrddnfasaaavaavkaDETKSKIVIQPVEKDSKERSYNVLSDKKN 364
Cdd:pfam01686 232 GGNIPALLDLKKYQQSGED--------------------------------EKPQKKPVISPLLQDSKGRSYNVIGEPGT 279
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 365 --TAYRSWYLAYNygDRDKGVRSWTLLTTSDVTCGVEQVYWSLPDMMQDPVTFRSTHQVSNYPVVGAELLPVYSKSFFNE 442
Cdd:pfam01686 280 ypTLYRSWLLAYL--NNQSGARKNTLLTVPDITGGIGQLYWSLPDTFKAPVTFKMTQKVEMSPVVGTQLFPLIGKSFYNG 357
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 443 QAVYSQQLRAFTSLTHVFNRFPENQILVRPPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYVYKAL 522
Cdd:pfam01686 358 ASVYSQLIEQATSSTHVFNRFPENQILMQAPCMNVTLVSENVPAVTDQGTLPLKNSIPGVQRVTITDDRRRPCPYVYKSI 437
                         490
                  ....*....|...
gi 1756480350 523 GIVAPRVLSSRTF 535
Cdd:pfam01686 438 ATVQPRVLSSATL 450
 
Name Accession Description Interval E-value
Adeno_Penton_B pfam01686
Adenovirus penton base protein; This family consists of various adenovirus penton base ...
45-535 0e+00

Adenovirus penton base protein; This family consists of various adenovirus penton base proteins, from both the Mastadenoviradae having mammalian hosts and the Aviadenoviradae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two.


Pssm-ID: 396312  Cd Length: 450  Bit Score: 708.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350  45 TEGRNSIRYSELTPLYDTTRLYLVDNKSADIASLNYQNDHSNFLTTVVQNNDFTPTEASTQTINFDERSRWGGQLKTIMH 124
Cdd:pfam01686   1 TGGRNSIRYGNLAPLQDTTKVFFVDNKSSDIDSYNQQNDHSNFFTTVIQNQDLNPEEASTQTIILDERSRWGGDLKTITK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 125 TNMPNVNQFMYSNKFKARVMVSRktpngvtvgDNYDGSQDELKYEWVEFELPEGNFSVTMTIDLMNNAIIDNYLAVGRQN 204
Cdd:pfam01686  81 TNCPNVSEFFQSNSFKVRLMVDR---------NLTKDKPVKEKYEWVDLTIPEGNYVLNEVIDLLNEGIVQIYLAVGRQN 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 205 GVLESDIGVKFDTRNFRLGWDPVTELVMPGVYTNEAFHPDIVLLPGCGVDFTESRLSNLLGIRKRQPFQEGFQIMYEDLD 284
Cdd:pfam01686 152 GVLESDIGVKFDTRYFFLGRDPVTGLVTPGAYVYKGYHPDIILLPGCAVDFTKSRLSNLLGIRKRDPYTKGFIITYEDLQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 285 GGNIPALLDVEAYEKSKEEsvaaattavatastevrddnfasaaavaavkaDETKSKIVIQPVEKDSKERSYNVLSDKKN 364
Cdd:pfam01686 232 GGNIPALLDLKKYQQSGED--------------------------------EKPQKKPVISPLLQDSKGRSYNVIGEPGT 279
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 365 --TAYRSWYLAYNygDRDKGVRSWTLLTTSDVTCGVEQVYWSLPDMMQDPVTFRSTHQVSNYPVVGAELLPVYSKSFFNE 442
Cdd:pfam01686 280 ypTLYRSWLLAYL--NNQSGARKNTLLTVPDITGGIGQLYWSLPDTFKAPVTFKMTQKVEMSPVVGTQLFPLIGKSFYNG 357
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480350 443 QAVYSQQLRAFTSLTHVFNRFPENQILVRPPAPTITTVSENVPALTDHGTLPLRSSIRGVQRVTVTDARRRTCPYVYKAL 522
Cdd:pfam01686 358 ASVYSQLIEQATSSTHVFNRFPENQILMQAPCMNVTLVSENVPAVTDQGTLPLKNSIPGVQRVTITDDRRRPCPYVYKSI 437
                         490
                  ....*....|...
gi 1756480350 523 GIVAPRVLSSRTF 535
Cdd:pfam01686 438 ATVQPRVLSSATL 450
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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