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Conserved domains on  [gi|1755644445|gb|QEY16478|]
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hypothetical protein D0C16_11095 [Cellvibrio sp. KY-GH-1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 84-111 1.09e-11

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


:

Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 59.91  E-value: 1.09e-11
                          10        20
                  ....*....|....*....|....*...
gi 1755644445  84 DFAVHPLPKPERNQPCPCGSGKKYKQCC 111
Cdd:COG3318    15 AIPRRAEPKVGRNDPCPCGSGKKYKKCC 42
PRK10396 super family cl35909
hypothetical protein; Provisional
 38-111 5.44e-07

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PRK10396:

Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 50.90  E-value: 5.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755644445  38 LNWIATHG--------ASLAPGLAEQVAPATGPAALFFRALGVQIYNHTPTPEhdfAVHPLPKPERNQPCPCGSGKKYKQ 109
Cdd:PRK10396  141 LEAIALHGteenfellEKMSPEAFEESVDAIRPAALALHAYWMAHPQEKAVQQ---PIKAEEKVGRNDPCPCGSGKKFKQ 217


                  ..
gi 1755644445 110 CC 111
Cdd:PRK10396  218 CC 219
PRK01617 super family cl30716
hypothetical protein; Provisional
 97-162 5.77e-03

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PRK01617:

Pssm-ID: 234966  Cd Length: 154  Bit Score: 37.70  E-value: 5.77e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1755644445  97 QPCPCGSGKKYKQCCSQLEMHNSPLADFNMLYYTLECA--PKN---MLATL-PSSKvnsealadvAEQWREE 162
Cdd:PRK01617    3 QLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAfvMKDadyLIKTWhPDCH---------AAAWRAE 65
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 84-111 1.09e-11

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 59.91  E-value: 1.09e-11
                          10        20
                  ....*....|....*....|....*...
gi 1755644445  84 DFAVHPLPKPERNQPCPCGSGKKYKQCC 111
Cdd:COG3318    15 AIPRRAEPKVGRNDPCPCGSGKKYKKCC 42
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 95-111 5.72e-10

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 54.41  E-value: 5.72e-10
                          10
                  ....*....|....*..
gi 1755644445  95 RNQPCPCGSGKKYKQCC 111
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCC 17
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 92-111 1.27e-09

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 55.78  E-value: 1.27e-09
                          10        20
                  ....*....|....*....|
gi 1755644445  92 KPERNQPCPCGSGKKYKQCC 111
Cdd:TIGR04102  88 TPNRNDPCPCGSGKKYKKCC 107
PRK01617 PRK01617
hypothetical protein; Provisional
 91-113 3.79e-09

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 55.81  E-value: 3.79e-09
                          10        20
                  ....*....|....*....|...
gi 1755644445  91 PKPERNQPCPCGSGKKYKQCCSQ 113
Cdd:PRK01617  132 PQFGRNDPCPCGSGKKFKKCCGQ 154
PRK10396 PRK10396
hypothetical protein; Provisional
 38-111 5.44e-07

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 50.90  E-value: 5.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755644445  38 LNWIATHG--------ASLAPGLAEQVAPATGPAALFFRALGVQIYNHTPTPEhdfAVHPLPKPERNQPCPCGSGKKYKQ 109
Cdd:PRK10396  141 LEAIALHGteenfellEKMSPEAFEESVDAIRPAALALHAYWMAHPQEKAVQQ---PIKAEEKVGRNDPCPCGSGKKFKQ 217


                  ..
gi 1755644445 110 CC 111
Cdd:PRK10396  218 CC 219
PRK01617 PRK01617
hypothetical protein; Provisional
 97-162 5.77e-03

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 37.70  E-value: 5.77e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1755644445  97 QPCPCGSGKKYKQCCSQLEMHNSPLADFNMLYYTLECA--PKN---MLATL-PSSKvnsealadvAEQWREE 162
Cdd:PRK01617    3 QLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAfvMKDadyLIKTWhPDCH---------AAAWRAE 65
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 84-111 1.09e-11

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 59.91  E-value: 1.09e-11
                          10        20
                  ....*....|....*....|....*...
gi 1755644445  84 DFAVHPLPKPERNQPCPCGSGKKYKQCC 111
Cdd:COG3318    15 AIPRRAEPKVGRNDPCPCGSGKKYKKCC 42
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 95-111 5.72e-10

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 54.41  E-value: 5.72e-10
                          10
                  ....*....|....*..
gi 1755644445  95 RNQPCPCGSGKKYKQCC 111
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCC 17
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 92-111 1.27e-09

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 55.78  E-value: 1.27e-09
                          10        20
                  ....*....|....*....|
gi 1755644445  92 KPERNQPCPCGSGKKYKQCC 111
Cdd:TIGR04102  88 TPNRNDPCPCGSGKKYKKCC 107
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 91-115 3.67e-09

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 60.04  E-value: 3.67e-09
                          10        20
                  ....*....|....*....|....*
gi 1755644445  91 PKPERNQPCPCGSGKKYKQCCSQLE 115
Cdd:COG0653   852 PKVGRNDPCPCGSGKKYKHCHGKLA 876
PRK01617 PRK01617
hypothetical protein; Provisional
 91-113 3.79e-09

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 55.81  E-value: 3.79e-09
                          10        20
                  ....*....|....*....|...
gi 1755644445  91 PKPERNQPCPCGSGKKYKQCCSQ 113
Cdd:PRK01617  132 PQFGRNDPCPCGSGKKFKKCCGQ 154
PRK05590 PRK05590
hypothetical protein; Provisional
 95-111 3.05e-08

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 53.44  E-value: 3.05e-08
                          10
                  ....*....|....*..
gi 1755644445  95 RNQPCPCGSGKKYKQCC 111
Cdd:PRK05590  147 RNDPCPCGSGKKYKKCC 163
PRK10396 PRK10396
hypothetical protein; Provisional
 38-111 5.44e-07

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 50.90  E-value: 5.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755644445  38 LNWIATHG--------ASLAPGLAEQVAPATGPAALFFRALGVQIYNHTPTPEhdfAVHPLPKPERNQPCPCGSGKKYKQ 109
Cdd:PRK10396  141 LEAIALHGteenfellEKMSPEAFEESVDAIRPAALALHAYWMAHPQEKAVQQ---PIKAEEKVGRNDPCPCGSGKKFKQ 217


                  ..
gi 1755644445 110 CC 111
Cdd:PRK10396  218 CC 219
PRK02250 PRK02250
hypothetical protein; Provisional
 80-111 2.05e-05

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 45.25  E-value: 2.05e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1755644445  80 TPEHDFAVHPLP---KPERNQPCPCGSGKKYKQCC 111
Cdd:PRK02250  131 EPEQDPRLNQSVsslKQGRNDPCICGSGKKFKKCC 165
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 95-111 2.11e-05

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 44.83  E-value: 2.11e-05
                          10
                  ....*....|....*..
gi 1755644445  95 RNQPCPCGSGKKYKQCC 111
Cdd:COG3012     2 SNSPCPCGSGKPYADCC 18
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 97-115 3.41e-05

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 47.00  E-value: 3.41e-05
                          10
                  ....*....|....*....
gi 1755644445  97 QPCPCGSGKKYKQCCSQLE 115
Cdd:PRK12904  812 DPCPCGSGKKYKHCHGRLA 830
PRK00183 PRK00183
hypothetical protein; Provisional
 92-112 9.52e-05

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 43.25  E-value: 9.52e-05
                          10        20
                  ....*....|....*....|.
gi 1755644445  92 KPERNQPCPCGSGKKYKQCCS 112
Cdd:PRK00183  133 KAGRNDPCPCGSGQKFKKCCA 153
PRK01752 PRK01752
YchJ family protein;
90-111 4.40e-04

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 41.31  E-value: 4.40e-04
                          10        20
                  ....*....|....*....|..
gi 1755644445  90 LPKPERNQPCPCGSGKKYKQCC 111
Cdd:PRK01752  131 VPLPTMKQPCVCGSGKKFKHCC 152
PRK01617 PRK01617
hypothetical protein; Provisional
 97-162 5.77e-03

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 37.70  E-value: 5.77e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1755644445  97 QPCPCGSGKKYKQCCSQLEMHNSPLADFNMLYYTLECA--PKN---MLATL-PSSKvnsealadvAEQWREE 162
Cdd:PRK01617    3 QLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAfvMKDadyLIKTWhPDCH---------AAAWRAE 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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