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Conserved domains on  [gi|1752924104|gb|QEX02426|]
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glycoside hydrolase family 28 protein [Enterococcus faecium]

Protein Classification

glycoside hydrolase family 28 protein( domain architecture ID 11475089)

glycoside hydrolase family 28 protein such as polygalacturonase that catalyzes the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans, and exo-poly-alpha-D-galacturonosidase which catalyzes the hydrolysis of pectic acid from the non-reducing end, releasing digalacturonate

CATH:  2.160.20.10
CAZY:  GH28
EC:  3.2.1.-
Gene Ontology:  GO:0005975|GO:0004553
PubMed:  17397864

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
3-407 4.81e-114

Polygalacturonase [Carbohydrate transport and metabolism];


:

Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 339.10  E-value: 4.81e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104   3 TKKGIINALNFK-TNDTQQDDTIILQKAIDQ-----GAKehlpVFIPKGIYLVGALFLKDKSHLIFEEGAVLKGRTDIEA 76
Cdd:COG5434     5 FPAKTFNITDFGaKGDGKTLNTAAIQKAIDAcaaagGGT----VLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDPAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104  77 FPEIDTRVAGVEMKWPAAILNVLSAKDILIEGKGIIDGQGDHWWElyWGKDQKsgtraeydQKGLRWIADYAIKRPRACL 156
Cdd:COG5434    81 YPLVETRWEGGELKGYSALIYAENAENIAITGEGTIDGNGDAWWP--WKKEAR--------QSGWVPVGAYDYLRPRLIQ 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 157 LYHAEHVVVRDLIFQKSGFWNLQITYSNDVLVEKVIIRNN-DGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGRDGN 235
Cdd:COG5434   151 LKNCKNVLLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPaDAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDAD 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 236 GARvNRKSSRIEVARCKIRSGYG-VTIGSEVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDV-QF 313
Cdd:COG5434   231 GRR-NRPTENIVIRNCTFRSGHGgIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGT 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 314 PFswIMDWHNEYNRknsndlaqmpeswqavAEEIPeskqmtKVKDIHIKNVQACLSPGyslpsrAFDLVAFPEKPIEDVC 393
Cdd:COG5434   310 PI--FINLFYEGDR----------------GGPTP------TFRNITISNVTATGAKS------AILIAGLPEAPIENIT 359

                         410
                  ....*....|....
gi 1752924104 394 FSHCQITAKEFGRI 407
Cdd:COG5434   360 LENVTIGAAYGFYI 373
 
Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
3-407 4.81e-114

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 339.10  E-value: 4.81e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104   3 TKKGIINALNFK-TNDTQQDDTIILQKAIDQ-----GAKehlpVFIPKGIYLVGALFLKDKSHLIFEEGAVLKGRTDIEA 76
Cdd:COG5434     5 FPAKTFNITDFGaKGDGKTLNTAAIQKAIDAcaaagGGT----VLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDPAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104  77 FPEIDTRVAGVEMKWPAAILNVLSAKDILIEGKGIIDGQGDHWWElyWGKDQKsgtraeydQKGLRWIADYAIKRPRACL 156
Cdd:COG5434    81 YPLVETRWEGGELKGYSALIYAENAENIAITGEGTIDGNGDAWWP--WKKEAR--------QSGWVPVGAYDYLRPRLIQ 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 157 LYHAEHVVVRDLIFQKSGFWNLQITYSNDVLVEKVIIRNN-DGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGRDGN 235
Cdd:COG5434   151 LKNCKNVLLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPaDAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDAD 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 236 GARvNRKSSRIEVARCKIRSGYG-VTIGSEVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDV-QF 313
Cdd:COG5434   231 GRR-NRPTENIVIRNCTFRSGHGgIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGT 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 314 PFswIMDWHNEYNRknsndlaqmpeswqavAEEIPeskqmtKVKDIHIKNVQACLSPGyslpsrAFDLVAFPEKPIEDVC 393
Cdd:COG5434   310 PI--FINLFYEGDR----------------GGPTP------TFRNITISNVTATGAKS------AILIAGLPEAPIENIT 359

                         410
                  ....*....|....
gi 1752924104 394 FSHCQITAKEFGRI 407
Cdd:COG5434   360 LENVTIGAAYGFYI 373
PLN02218 PLN02218
polygalacturonase ADPG
 108-314 2.02e-21

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 95.86  E-value: 2.02e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 108 GKGIIDGQGDHWWelywgkdQKSGTRAEydqkglrwiADYAIKRPRACLLYHAEHVVVRDLIFQKSGFWNLQITYSNDVL 187
Cdd:PLN02218  164 STGVVDGNGETWW-------QNSCKRNK---------AKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQ 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 188 VEKVIIRN-NDGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGrdgngarvnrkSSRIEVARCKIRSGYGVTIGS--- 263
Cdd:PLN02218  228 VSNVVVTApADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSlgd 296

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1752924104 264 -EVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDVQFP 314
Cdd:PLN02218  297 dNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 102-311 2.52e-19

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 88.21  E-value: 2.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 102 KDILIEGKGI---------IDGQGDHWWELywgkdqkSGTrAEYDQKglrwiadyaiKRPRACLLYHAEHVVVRDLIFQK 172
Cdd:pfam00295  42 KLIWISGSSItvtgasggtIDGQGQRWWDG-------KGT-KKNGGK----------KKPKFIYIHKVKNSKITGLNIKN 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 173 SGFWNLQITYSNDVLVEKVIIRNNDG----PSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGrdgngarvnrksSRIEV 248
Cdd:pfam00295 104 SPVFHFSVQSGTDLTISDITIDNSAGdsngHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSG------------SNISI 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752924104 249 ARCKIRSGYGVTIGSE---VSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDV 311
Cdd:pfam00295 172 TNVTCGGGHGISIGSVggrSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYENIVLSNI 237
RR_plus_rpt_1 TIGR03808
twin-arg-translocated uncharacterized repeat protein; Members of this protein family have a ...
 17-66 1.46e-04

twin-arg-translocated uncharacterized repeat protein; Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.


Pssm-ID: 163520 [Multi-domain]  Cd Length: 455  Bit Score: 44.03  E-value: 1.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1752924104  17 DTQQDDTIILQKAIDQGAKEHLPVFIPKGIYLVGALFLKDKSHLIFEEGA 66
Cdd:TIGR03808  48 NSPDDQTRALQRAIDEAARAQTPLALPPGVYRTGPLRLPSGAQLIGVRGA 97
 
Name Accession Description Interval E-value
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
3-407 4.81e-114

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 339.10  E-value: 4.81e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104   3 TKKGIINALNFK-TNDTQQDDTIILQKAIDQ-----GAKehlpVFIPKGIYLVGALFLKDKSHLIFEEGAVLKGRTDIEA 76
Cdd:COG5434     5 FPAKTFNITDFGaKGDGKTLNTAAIQKAIDAcaaagGGT----VLVPAGTYLTGPIFLKSNVTLHLEKGATLLGSTDPAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104  77 FPEIDTRVAGVEMKWPAAILNVLSAKDILIEGKGIIDGQGDHWWElyWGKDQKsgtraeydQKGLRWIADYAIKRPRACL 156
Cdd:COG5434    81 YPLVETRWEGGELKGYSALIYAENAENIAITGEGTIDGNGDAWWP--WKKEAR--------QSGWVPVGAYDYLRPRLIQ 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 157 LYHAEHVVVRDLIFQKSGFWNLQITYSNDVLVEKVIIRNN-DGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGRDGN 235
Cdd:COG5434   151 LKNCKNVLLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPaDAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDAD 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 236 GARvNRKSSRIEVARCKIRSGYG-VTIGSEVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDV-QF 313
Cdd:COG5434   231 GRR-NRPTENIVIRNCTFRSGHGgIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVkGT 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 314 PFswIMDWHNEYNRknsndlaqmpeswqavAEEIPeskqmtKVKDIHIKNVQACLSPGyslpsrAFDLVAFPEKPIEDVC 393
Cdd:COG5434   310 PI--FINLFYEGDR----------------GGPTP------TFRNITISNVTATGAKS------AILIAGLPEAPIENIT 359

                         410
                  ....*....|....
gi 1752924104 394 FSHCQITAKEFGRI 407
Cdd:COG5434   360 LENVTIGAAYGFYI 373
PLN02218 PLN02218
polygalacturonase ADPG
 108-314 2.02e-21

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 95.86  E-value: 2.02e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 108 GKGIIDGQGDHWWelywgkdQKSGTRAEydqkglrwiADYAIKRPRACLLYHAEHVVVRDLIFQKSGFWNLQITYSNDVL 187
Cdd:PLN02218  164 STGVVDGNGETWW-------QNSCKRNK---------AKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQ 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 188 VEKVIIRN-NDGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGrdgngarvnrkSSRIEVARCKIRSGYGVTIGS--- 263
Cdd:PLN02218  228 VSNVVVTApADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSlgd 296

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1752924104 264 -EVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDVQFP 314
Cdd:PLN02218  297 dNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 102-311 2.52e-19

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 88.21  E-value: 2.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 102 KDILIEGKGI---------IDGQGDHWWELywgkdqkSGTrAEYDQKglrwiadyaiKRPRACLLYHAEHVVVRDLIFQK 172
Cdd:pfam00295  42 KLIWISGSSItvtgasggtIDGQGQRWWDG-------KGT-KKNGGK----------KKPKFIYIHKVKNSKITGLNIKN 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 173 SGFWNLQITYSNDVLVEKVIIRNNDG----PSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGrdgngarvnrksSRIEV 248
Cdd:pfam00295 104 SPVFHFSVQSGTDLTISDITIDNSAGdsngHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSG------------SNISI 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752924104 249 ARCKIRSGYGVTIGSE---VSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDV 311
Cdd:pfam00295 172 TNVTCGGGHGISIGSVggrSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYENIVLSNI 237
PLN03010 PLN03010
polygalacturonase
 104-314 6.66e-18

polygalacturonase


Pssm-ID: 215540 [Multi-domain]  Cd Length: 409  Bit Score: 85.05  E-value: 6.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 104 ILIEGKGIIDGQGDHWWElywgkdqksgtraeydqkglrwiadyaikrprACLLYHAEHVVVRDLIFQKSGFWNLQITYS 183
Cdd:PLN03010  141 LMIDGSGTIDGRGSSFWE--------------------------------ALHISKCDNLTINGITSIDSPKNHISIKTC 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 184 NDVLVEKV-IIRNNDGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGrdgngarvnrkSSRIEVARCKIRSGYGVTIG 262
Cdd:PLN03010  189 NYVAISKInILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG-----------SSNINITQINCGPGHGISVG 257

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1752924104 263 S----EVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDVQFP 314
Cdd:PLN03010  258 SlgadGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNP 313
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 17-320 2.84e-17

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 83.36  E-value: 2.84e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104  17 DTQQDDTIILQKAIDQ--GAKEHLPVFIPKGIYLVGALFL----KDKSHLIFeegaVLKGRTDIEAFPeidTRVAGVEMK 90
Cdd:PLN02188   47 NGHTDDSKAFMAAWKAacASTGAVTLLIPPGTYYIGPVQFhgpcTNVSSLTF----TLKAATDLSRYG---SGNDWIEFG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104  91 WpaailnvlsAKDILIEGKGIIDGQGDHWWELywgkdQKSGTRAeyDQKGLrwiadyaikrPRACLLYHAEHVVVRDLIF 170
Cdd:PLN02188  120 W---------VNGLTLTGGGTFDGQGAAAWPF-----NKCPIRK--DCKLL----------PTSVKFVNMNNTVVRGITS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 171 QKSGFWNLQITYSNDVLVEKVIIRN-NDGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGRDGngarvnrkssrIEVA 249
Cdd:PLN02188  174 VNSKFFHIALVECRNFKGSGLKISApSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQ-----------VTIT 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1752924104 250 RCKIRSGYGVTIGS----EVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIE--NIRVENLNMIDVQFPFswIMD 320
Cdd:PLN02188  243 RIRCGPGHGISVGSlgryPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAatNMTFENIVMNNVTNPI--IID 317
PLN03003 PLN03003
Probable polygalacturonase At3g15720
 104-314 1.48e-14

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 75.10  E-value: 1.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 104 ILIEGKGIIDGQGDHWWElywgkdqksgtraeydQKGlrwiadyaiKRPRACLLYHAEHVVVRDLIFQKSGFWNLQITYS 183
Cdd:PLN03003  115 LVIEGDGEINGQGSSWWE----------------HKG---------SRPTALKFRSCNNLRLSGLTHLDSPMAHIHISEC 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 184 NDVLVEKVIIRNNDG-PSTDGIDIDSSTNVRVYECDLACGDDCIAIKSGrdgngarvnrkSSRIEVARCKIRSGYGVTIG 262
Cdd:PLN03003  170 NYVTISSLRINAPESsPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGPGHGISIG 238

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1752924104 263 S----EVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDVQFP 314
Cdd:PLN03003  239 SlgkdGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENP 294
PLN02793 PLN02793
Probable polygalacturonase
 106-314 1.85e-12

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 68.75  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 106 IEGKGIIDGQGDHWWELYWGKDQKSGTRAEydqkglrwiadyaikrPRACLLYHAEHVVVRDLIFQKSGFWNLQITYSND 185
Cdd:PLN02793  147 VEGGGTVNGMGHEWWAQSCKINHTNPCRHA----------------PTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRR 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 186 VLVEK-VIIRNNDGPSTDGIDIDSSTNVRVYECDLACGDDCIAIKSgrdgngarvnrKSSRIEVARCKIRSGYGVTIGS- 263
Cdd:PLN02793  211 VTISGlKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVG-----------NSSRIKIRNIACGPGHGISIGSl 279

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1752924104 264 ---EVSAGVSDVYIHDIDFFQSDCGIRMKSSKERGGVIENIRVENLNMIDVQFP 314
Cdd:PLN02793  280 gksNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNP 333
PLN02155 PLN02155
polygalacturonase
 166-417 6.50e-10

polygalacturonase


Pssm-ID: 165802 [Multi-domain]  Cd Length: 394  Bit Score: 60.47  E-value: 6.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 166 RDLIFQKSGFWNLQITYSNDVLVEKVIIRN------NDGPSTDGIDIDSSTNVRVYECDLACGDDCIAIksgrdGNGARv 239
Cdd:PLN02155  154 KDVIISGVKSMNSQVSHMTLNGCTNVVVRNvklvapGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAI-----GPGTR- 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 240 nrkssRIEVARCKIRSGYGVTIGSEVSA----GVSDVYIHDIDFFQSDCGIRMKS-SKERGGVIENIRVENLNMIDVQFP 314
Cdd:PLN02155  228 -----NFLITKLACGPGHGVSIGSLAKElnedGVENVTVSSSVFTGSQNGVRIKSwARPSTGFVRNVFFQDLVMKNVENP 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 315 FswIMDwhneynrknsndlaqmpESWQAVAEEIPESKQMTKVKDIHIKNVQaclspGYSLPSRAFDLVAFPEKPIEDVCF 394
Cdd:PLN02155  303 I--IID-----------------QNYCPTHEGCPNEYSGVKISQVTYKNIQ-----GTSATQEAMKLVCSKSSPCTGITL 358

                         250       260
                  ....*....|....*....|...
gi 1752924104 395 SHCQITakeFGRIEAVQNLCFKS 417
Cdd:PLN02155  359 QDIKLT---YNKGTPATSFCFNA 378
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 7-119 7.89e-05

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 43.46  E-value: 7.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104   7 IINALNFK-TNDTQQDDTIILQKAIDQGAKEHLP--VFIPKGIYLV-GALFLKDKSHLIfeeGA-----VLKGRTDIEAF 77
Cdd:pfam12708   1 FRNVKDYGaKGDGVTDDTAAIQKAIDDGGATTTPavVYFPPGTYLVsSPIILYSGTVLV---GDgnnppVLKAAPNFVGA 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1752924104  78 PEIDTRVAGVEMKWPAAILNVL-SAKDILIEGKGI-IDGQGDHW 119
Cdd:pfam12708  78 GLIDGDPYTGGGPGIINTNNFYrQIRNLVIDITGVaPGATGIHW 121
RR_plus_rpt_1 TIGR03808
twin-arg-translocated uncharacterized repeat protein; Members of this protein family have a ...
 17-66 1.46e-04

twin-arg-translocated uncharacterized repeat protein; Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.


Pssm-ID: 163520 [Multi-domain]  Cd Length: 455  Bit Score: 44.03  E-value: 1.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1752924104  17 DTQQDDTIILQKAIDQGAKEHLPVFIPKGIYLVGALFLKDKSHLIFEEGA 66
Cdd:TIGR03808  48 NSPDDQTRALQRAIDEAARAQTPLALPPGVYRTGPLRLPSGAQLIGVRGA 97
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 154-313 3.00e-03

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 39.51  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 154 ACLLYHAEHVVVRDLIFQKSGF--WnlqITYSNDVLVEKVIIRNND---GPSTDGIDIDSSTNVRVYECDLACGDDCIAI 228
Cdd:COG3420   100 GIYVRGADNAVIENNRIENNLFgiY---LEGSDNNVIRNNTISGNRdlrADRGNGIHLWNSPGNVIEGNTISGGRDGIYL 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752924104 229 KSGRD--------------------------GNGARVNRK------SSRIEVARCKIR--SGYGVTIgsevsAGVSDVYI 274
Cdd:COG3420   177 EFSDNnvirnntirnlrygihymysndnlveGNTFRDNGAgialmySKGNTVRGNTILgnSGYGILL-----KESSDSVI 251

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1752924104 275 HDIDFFQSDCGIRMKSSkeRGGVIENIRVENlNMIDVQF 313
Cdd:COG3420   252 EGNTISGNGKGIFIYNS--NRNTIRGNLFAG-NGIGIHL 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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