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Conserved domains on  [gi|1737932752|emb|SHN39252|]
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protein of unknown function [Chitinophaga sp. CF418]

Protein Classification

DUF4878 domain-containing protein( domain architecture ID 10583376)

DUF4878 domain-containing protein belongs to the nuclear transport factor 2 (NTF2-like) superfamily

CATH:  3.10.450.50
SCOP:  3000472

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4878 pfam12870
Domain of unknown function (DUF4878); This is a family of putative lipoproteins from bacteria. ...
 19-120 1.03e-36

Domain of unknown function (DUF4878); This is a family of putative lipoproteins from bacteria. The family is probably related to the NTF2-like transpeptidase family.


:

Pssm-ID: 432842  Cd Length: 111  Bit Score: 122.29  E-value: 1.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737932752  19 SSCKKrASPQEVALNFMHAIQESNFDLARDYATKESQQVIQLYSFFDARRND----SERDKIKKAGI---KVIETEENGD 91
Cdd:pfam12870   1 VSCGE-NGPKDVVINFMKDIEEGNGDDAIKYLTEDTRDSDAKKEKVKGKFKEaaakAESKKEKFGGIdevEIVDECEEGD 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1737932752  92 KATVTV---LNSSSQQKERLQLVKENGRWKIS 120
Cdd:pfam12870  80 TAIVTVfvrTKDGSEKKDTIELIKEDGEWKIS 111
 
Name Accession Description Interval E-value
DUF4878 pfam12870
Domain of unknown function (DUF4878); This is a family of putative lipoproteins from bacteria. ...
 19-120 1.03e-36

Domain of unknown function (DUF4878); This is a family of putative lipoproteins from bacteria. The family is probably related to the NTF2-like transpeptidase family.


Pssm-ID: 432842  Cd Length: 111  Bit Score: 122.29  E-value: 1.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737932752  19 SSCKKrASPQEVALNFMHAIQESNFDLARDYATKESQQVIQLYSFFDARRND----SERDKIKKAGI---KVIETEENGD 91
Cdd:pfam12870   1 VSCGE-NGPKDVVINFMKDIEEGNGDDAIKYLTEDTRDSDAKKEKVKGKFKEaaakAESKKEKFGGIdevEIVDECEEGD 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1737932752  92 KATVTV---LNSSSQQKERLQLVKENGRWKIS 120
Cdd:pfam12870  80 TAIVTVfvrTKDGSEKKDTIELIKEDGEWKIS 111
 
Name Accession Description Interval E-value
DUF4878 pfam12870
Domain of unknown function (DUF4878); This is a family of putative lipoproteins from bacteria. ...
 19-120 1.03e-36

Domain of unknown function (DUF4878); This is a family of putative lipoproteins from bacteria. The family is probably related to the NTF2-like transpeptidase family.


Pssm-ID: 432842  Cd Length: 111  Bit Score: 122.29  E-value: 1.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737932752  19 SSCKKrASPQEVALNFMHAIQESNFDLARDYATKESQQVIQLYSFFDARRND----SERDKIKKAGI---KVIETEENGD 91
Cdd:pfam12870   1 VSCGE-NGPKDVVINFMKDIEEGNGDDAIKYLTEDTRDSDAKKEKVKGKFKEaaakAESKKEKFGGIdevEIVDECEEGD 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1737932752  92 KATVTV---LNSSSQQKERLQLVKENGRWKIS 120
Cdd:pfam12870  80 TAIVTVfvrTKDGSEKKDTIELIKEDGEWKIS 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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