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Conserved domains on  [gi|1735628096|gb|QEN94844|]
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NAD(P)/FAD-dependent oxidoreductase [Xanthomonas translucens pv. undulosa]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11482650)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07233 PRK07233
hypothetical protein; Provisional
 8-433 0e+00

hypothetical protein; Provisional


:

Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 616.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDTKM 87
Cdd:PRK07233    3 AIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRETKT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  88 GYFYNGKLYKWGTPFALLGFPHLGPISKLRYALHVMYTKGIKDWTALDKVNATTWIRKWIGDKAYDVMWKDAFRLKFFEY 167
Cdd:PRK07233   83 GYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDY 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 168 RDNLSASWIGTRIKRIALSRRSLMHESLGYLDGGSMTLLDKMAADITARGGRILLSQGIDEVVSENGSVSGVRAGGQFVA 247
Cdd:PRK07233  163 ADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEED 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 248 YDGVVSTAPIQYVPAMVPGLPPDFSAQIRAIENIPVACVILKLKQPISENFWMNISDPSIAIPGVIEYSNLNPT-TPPGQ 326
Cdd:PRK07233  243 FDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDPGAPFGGVIEHTNLVPPeRYGGE 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 327 KILYAPFYMPKTHPKWSMSNDALIEEVLGYLPKLNPSFERDWVLATHCHRYEFAQTICPPGFQDRLPAMHTPLNGFFMAD 406
Cdd:PRK07233  323 HLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAG 402

                         410       420
                  ....*....|....*....|....*..
gi 1735628096 407 TAYYYPEDRSISESLQAADRLAEAVLQ 433
Cdd:PRK07233  403 MSQIYPEDRSINGSVRAGRRVAREILE 429
 
Name Accession Description Interval E-value
PRK07233 PRK07233
hypothetical protein; Provisional
 8-433 0e+00

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 616.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDTKM 87
Cdd:PRK07233    3 AIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRETKT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  88 GYFYNGKLYKWGTPFALLGFPHLGPISKLRYALHVMYTKGIKDWTALDKVNATTWIRKWIGDKAYDVMWKDAFRLKFFEY 167
Cdd:PRK07233   83 GYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDY 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 168 RDNLSASWIGTRIKRIALSRRSLMHESLGYLDGGSMTLLDKMAADITARGGRILLSQGIDEVVSENGSVSGVRAGGQFVA 247
Cdd:PRK07233  163 ADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEED 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 248 YDGVVSTAPIQYVPAMVPGLPPDFSAQIRAIENIPVACVILKLKQPISENFWMNISDPSIAIPGVIEYSNLNPT-TPPGQ 326
Cdd:PRK07233  243 FDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDPGAPFGGVIEHTNLVPPeRYGGE 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 327 KILYAPFYMPKTHPKWSMSNDALIEEVLGYLPKLNPSFERDWVLATHCHRYEFAQTICPPGFQDRLPAMHTPLNGFFMAD 406
Cdd:PRK07233  323 HLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAG 402

                         410       420
                  ....*....|....*....|....*..
gi 1735628096 407 TAYYYPEDRSISESLQAADRLAEAVLQ 433
Cdd:PRK07233  403 MSQIYPEDRSINGSVRAGRRVAREILE 429
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 4-434 2.24e-102

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 311.77  E-value: 2.24e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWT 83
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEVDGFRIDRGPHSFLTRDPEVLELLRELGLGDELVWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  84 DTKMGY-FYNGKLYKW-GTPFALLGFPHLGPISKLRYALHVMytkgIKDWTALDKVNATTWIRKWIGDKAYDVMWKDAFR 161
Cdd:COG1232    81 NTRKSYiYYGGKLHPLpQGPLALLRSPLLSLAGKLRALLELL----APRRPPGEDESLAEFVRRRFGREVYERLVEPLLE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 162 LKFFEYRDNLSASWIGTRIKRIALSRRSLM------------HESLGYLDGGSMTLLDKMAADITArgGRILLSQGIDEV 229
Cdd:COG1232   157 GVYAGDPDELSADWAFPRLKRLELEHGSLIkgalalrkgakaGEVFGYLRGGLGTLVEALAEALEA--GEIRLGTRVTAI 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 230 VSENGSVSGVRAGGQFVAYDGVVSTAPIQYVPAMVPGLPPDFSAQIRAIENIPVACVILKLKQP-ISEN---FWMNISDP 305
Cdd:COG1232   235 EREGGGWRVTTSDGETIEADAVVSATPAPALARLLAPLPPEVAAALAGIPYASVAVVALGFDRPdLPPPdgfGWLVPRDE 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 306 SIAIPGVIEYSNLNP-TTPPGQKILYAPFYMPKTHPKWSMSNDALIEEVLGYLPKLNPSFERDwvLATHCHRYEFAQTIC 384
Cdd:COG1232   315 GVPILAVTFSSNKWPhRAPDGKVLLRLEVGGAGDPELWQLSDEELVALALADLRKLLGIDAEP--VDTRVVRWPKAYPQY 392

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1735628096 385 PPGFQDRLPAMHTPLN---GFFMADTAYyypEDRSISESLQAADRLAEAVLQA 434
Cdd:COG1232   393 TVGHLERVAAIREALAalpGLYLAGRAY---DGVGLPDCIRSGREAAERILAE 442
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 16-427 3.96e-38

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 143.40  E-value: 3.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  16 GLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDTKM-------- 87
Cdd:pfam01593   3 GLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPfytvlfag 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  88 GYFYNGKLYKWGTPF-ALLGFPHLGPISKLRYALHVMYTKGIKDWTALDKVNATTWIRKwIGDK--AYDVMWKDAFRLKF 164
Cdd:pfam01593  83 GRRYPGDFRRVPAGWeGLLEFGRLLSIPEKLRLGLAALASDALDEFDLDDFSLAESLLF-LGRRgpGDVEVWDRLIDPEL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 165 FEYRDNLSASWIGTRIKR------IALSRRSLMHESLGYLDGGSMTLLDKMAADItaRGGRILLSQGIDEVVSENGSVSG 238
Cdd:pfam01593 162 FAALPFASGAFAGDPSELsaglalPLLWALLGEGGSLLLPRGGLGALPDALAAQL--LGGDVRLNTRVRSIDREGDGVTV 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 239 VRAGGQFVAYDGVVSTAPiqyVPAM-----VPGLPPDFSAQIRAIENIPVACVILKLKQPI-SENFWMNISDPSIAIPGV 312
Cdd:pfam01593 240 TLTDGEVIEADAVIVTVP---LGVLkrilfTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFwPDLGLLGLLSELLTGLGT 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 313 IEYSNL-NPTTPPGQKILYAPFYMP-KTHPKW-SMSNDALIEEVLGYLPKLNPsFERDWVLATHCHR----------YEF 379
Cdd:pfam01593 317 AFSWLTfPNRAPPGKGLLLLVYVGPgDRARELeGLSDEELLQAVLRDLRKLFG-EEAPEPLRVLVSDwhtdpwprgsYSL 395

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1735628096 380 AQTicPPGFQDRLPAMHTPLNGFFMA--DTAYYYPE--DRSISESLQAADRL 427
Cdd:pfam01593 396 PQY--GPGHDDYRPLARTPDPGLFFAgeHTSTGYPGtvEGAIESGRRAARAV 445
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 4-120 1.80e-05

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 46.75  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRL----LDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDK 79
Cdd:TIGR00562   2 KKHVVIIGGGISGLCAAYYLekeiPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1735628096  80 LHWTDTKMGYFY--NGKLYkwGTPFALLGFPHLGPIS---KLRYAL 120
Cdd:TIGR00562  82 LVSDATGQRYVLvnRGKLM--PVPTKIAPFVKTGLFSlggKLRAGM 125
 
Name Accession Description Interval E-value
PRK07233 PRK07233
hypothetical protein; Provisional
 8-433 0e+00

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 616.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDTKM 87
Cdd:PRK07233    3 AIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRETKT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  88 GYFYNGKLYKWGTPFALLGFPHLGPISKLRYALHVMYTKGIKDWTALDKVNATTWIRKWIGDKAYDVMWKDAFRLKFFEY 167
Cdd:PRK07233   83 GYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDY 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 168 RDNLSASWIGTRIKRIALSRRSLMHESLGYLDGGSMTLLDKMAADITARGGRILLSQGIDEVVSENGSVSGVRAGGQFVA 247
Cdd:PRK07233  163 ADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEED 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 248 YDGVVSTAPIQYVPAMVPGLPPDFSAQIRAIENIPVACVILKLKQPISENFWMNISDPSIAIPGVIEYSNLNPT-TPPGQ 326
Cdd:PRK07233  243 FDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDPGAPFGGVIEHTNLVPPeRYGGE 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 327 KILYAPFYMPKTHPKWSMSNDALIEEVLGYLPKLNPSFERDWVLATHCHRYEFAQTICPPGFQDRLPAMHTPLNGFFMAD 406
Cdd:PRK07233  323 HLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAG 402

                         410       420
                  ....*....|....*....|....*..
gi 1735628096 407 TAYYYPEDRSISESLQAADRLAEAVLQ 433
Cdd:PRK07233  403 MSQIYPEDRSINGSVRAGRRVAREILE 429
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 4-434 2.24e-102

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 311.77  E-value: 2.24e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWT 83
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEVDGFRIDRGPHSFLTRDPEVLELLRELGLGDELVWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  84 DTKMGY-FYNGKLYKW-GTPFALLGFPHLGPISKLRYALHVMytkgIKDWTALDKVNATTWIRKWIGDKAYDVMWKDAFR 161
Cdd:COG1232    81 NTRKSYiYYGGKLHPLpQGPLALLRSPLLSLAGKLRALLELL----APRRPPGEDESLAEFVRRRFGREVYERLVEPLLE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 162 LKFFEYRDNLSASWIGTRIKRIALSRRSLM------------HESLGYLDGGSMTLLDKMAADITArgGRILLSQGIDEV 229
Cdd:COG1232   157 GVYAGDPDELSADWAFPRLKRLELEHGSLIkgalalrkgakaGEVFGYLRGGLGTLVEALAEALEA--GEIRLGTRVTAI 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 230 VSENGSVSGVRAGGQFVAYDGVVSTAPIQYVPAMVPGLPPDFSAQIRAIENIPVACVILKLKQP-ISEN---FWMNISDP 305
Cdd:COG1232   235 EREGGGWRVTTSDGETIEADAVVSATPAPALARLLAPLPPEVAAALAGIPYASVAVVALGFDRPdLPPPdgfGWLVPRDE 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 306 SIAIPGVIEYSNLNP-TTPPGQKILYAPFYMPKTHPKWSMSNDALIEEVLGYLPKLNPSFERDwvLATHCHRYEFAQTIC 384
Cdd:COG1232   315 GVPILAVTFSSNKWPhRAPDGKVLLRLEVGGAGDPELWQLSDEELVALALADLRKLLGIDAEP--VDTRVVRWPKAYPQY 392

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1735628096 385 PPGFQDRLPAMHTPLN---GFFMADTAYyypEDRSISESLQAADRLAEAVLQA 434
Cdd:COG1232   393 TVGHLERVAAIREALAalpGLYLAGRAY---DGVGLPDCIRSGREAAERILAE 442
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 16-427 3.96e-38

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 143.40  E-value: 3.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  16 GLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDTKM-------- 87
Cdd:pfam01593   3 GLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPfytvlfag 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  88 GYFYNGKLYKWGTPF-ALLGFPHLGPISKLRYALHVMYTKGIKDWTALDKVNATTWIRKwIGDK--AYDVMWKDAFRLKF 164
Cdd:pfam01593  83 GRRYPGDFRRVPAGWeGLLEFGRLLSIPEKLRLGLAALASDALDEFDLDDFSLAESLLF-LGRRgpGDVEVWDRLIDPEL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 165 FEYRDNLSASWIGTRIKR------IALSRRSLMHESLGYLDGGSMTLLDKMAADItaRGGRILLSQGIDEVVSENGSVSG 238
Cdd:pfam01593 162 FAALPFASGAFAGDPSELsaglalPLLWALLGEGGSLLLPRGGLGALPDALAAQL--LGGDVRLNTRVRSIDREGDGVTV 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 239 VRAGGQFVAYDGVVSTAPiqyVPAM-----VPGLPPDFSAQIRAIENIPVACVILKLKQPI-SENFWMNISDPSIAIPGV 312
Cdd:pfam01593 240 TLTDGEVIEADAVIVTVP---LGVLkrilfTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFwPDLGLLGLLSELLTGLGT 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 313 IEYSNL-NPTTPPGQKILYAPFYMP-KTHPKW-SMSNDALIEEVLGYLPKLNPsFERDWVLATHCHR----------YEF 379
Cdd:pfam01593 317 AFSWLTfPNRAPPGKGLLLLVYVGPgDRARELeGLSDEELLQAVLRDLRKLFG-EEAPEPLRVLVSDwhtdpwprgsYSL 395

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1735628096 380 AQTicPPGFQDRLPAMHTPLNGFFMA--DTAYYYPE--DRSISESLQAADRL 427
Cdd:pfam01593 396 PQY--GPGHDDYRPLARTPDPGLFFAgeHTSTGYPGtvEGAIESGRRAARAV 445
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 5-405 2.48e-31

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 124.58  E-value: 2.48e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   5 KHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFD--GLPIERYYHFI--CKTDdpLFALLSRYGLSDKL 80
Cdd:COG3349     4 PRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFPDPdtGLPIDNGQHVLlgCYRN--TLDLLRRIGAADNL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  81 HWTDT--------KMGYFYNGKL-YKWGTPFALLGFPHLGPISKLRyALHVMYTKGIKDWTALDKVNATTWI-RKWIGDK 150
Cdd:COG3349    82 VGPEPlqfplpggRRWTLRAPRLpAPLHLLRALLRAPGLSLADRLA-LLRLLTACRERRWRELDDISVADWLrRHGQSPR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 151 AYDVMWKDAFRLKFFEYRDNLSASWIGTRIKRIALSRRSLMHesLGYLDGGSMTLLDKMAAD-ITARGGRILLSQGIDEV 229
Cdd:COG3349   161 LIRRLWEPLLLAALNTPPEQASARLALTVLRETLLAGPAASD--LLVPRGPLSELFVDPALAyLEARGGEVRLGTRVRAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 230 VSENGSVSGVR-AGGQFVAYDGVVSTAPIQYVPAMVPGLP-PDFSAQIRAIENIPVACVILKLKQPISEnfwmnISDPSI 307
Cdd:COG3349   239 EFDGGRVTGLVlADGETVPADAVVLAVPPEVAARLLPELArLPELGLLAPLEYSPIVNVHLWLDRPVTL-----GPPPFA 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 308 AIPG-VIEYSNLNPTTPPGQK-----ILYAPfympktHPKWSMSNDALIEEVLGYLPKLNPSFERDWVLATHCHRYEFAQ 381
Cdd:COG3349   314 GLVGsTSQWVFDRGAGDGGQGgvlsvVISAA------DRLLDLSREELAAEVWAELAALLPAAREALPVWSRVVREKRAT 387

                         410       420
                  ....*....|....*....|....
gi 1735628096 382 TICPPGFQDRLPAMHTPLNGFFMA 405
Cdd:COG3349   388 FAATPGSDRLRPGARTPIPNLFLA 411
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
8-434 1.87e-27

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 113.48  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGG--MSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDT 85
Cdd:COG1231    11 VIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGrvWTLRFGDDGLYAELGAMRIPPSHTNLLALARELGLPLEPFPNEN 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  86 KMGYFY-NGKLYKWGTPFALLGFPHLGpISKLRYALHVMYTKGIKDWTALDKVNATTWIRKWIGDKAYDVMWKDAFRLKF 164
Cdd:COG1231    91 GNALLYlGGKRVRAGEIAADLRGVAEL-LAKLLRALAAALDPWAHPAAELDRESLAEWLRRNGASPSARRLLGLLGAGEY 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 165 FEYRDNLSASWigtrIKRIALSRRSLMHESlgYLDGGSMTLLDKMAADItarGGRILLSQGIDEVVSENGSVSGVRAGGQ 244
Cdd:COG1231   170 GADPDELSLLD----LLRYAASAGGGAQQF--RIVGGMDQLPRALAAEL---GDRIRLGAPVTRIRQDGDGVTVTTDDGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 245 FVAYDGVVSTAP------IQYVPAmvpgLPPDFSAQIRAIENIPVACVILKLKQPisenFW--------MNISDPSIAip 310
Cdd:COG1231   241 TVRADAVIVTVPpsvlrrIEFDPP----LPAAKRAAIQRLPYGAAIKVFLQFDRP----FWeedglyggISLTDLPIR-- 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 311 gVIEYSNLNPTTPPGqkILYAPFYMPKTHPKWSMSNDALIEEVLGYL------PKLNP--SFERDWvlathcHRYEFAQ- 381
Cdd:COG1231   311 -QTWYPSNGPDGGAG--VLLGYVGGDDARALAALSPEERVAAALEQLarifgvYAAEPvdYVSTDW------GRDPWSRg 381

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1735628096 382 --TICPPGFQDRL-PAMHTPLNGFFMA--DTAYYYPedRSISESLQAADRLAEAVLQA 434
Cdd:COG1231   382 ayAAAPPGQLTAAgPALAEPDGRIHFAgeHTSDEWP--GWVEGALESGERAAAEILAR 437
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 2-287 3.58e-25

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 107.24  E-value: 3.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   2 TSKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTD--DPLFALLsryGLSDK 79
Cdd:COG1233     1 MMMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERPGFRFDVGPSVLTMPGvlERLFREL---GLEDY 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  80 LHWTDTKMGYFY---NG----------------------------KLYKWGTPFALLGFPHL--GPISKLRYALHVMytk 126
Cdd:COG1233    78 LELVPLDPAYRVpfpDGraldlprdlertaaelerlfpgdaeayrRFLAELRRLYDALLEDLlyRPLLSLRDLLRPL--- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 127 GIKDWTALDKVNATTWIRKWIGDKaydvmwkdafRLK-FFEYrdnlSASWIGTRIKRI--ALSRRSLMHESLG--YLDGG 201
Cdd:COG1233   155 ALARLLRLLLRSLRDLLRRYFKDP----------RLRaLLAG----QALYLGLSPDRTpaLYALIAYLEYAGGvwYPKGG 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 202 SMTLLDKMAADITARGGRILLSQGIDEVVSENGSVSGVR-AGGQFVAYDGVVSTAPIQYVPA-MVPG--LPPDFSAQIRA 277
Cdd:COG1233   221 MGALADALARLAEELGGEIRTGAEVERILVEGGRATGVRlADGEEIRADAVVSNADPAHTYLrLLGEeaLPARYRRRLER 300

                         330
                  ....*....|
gi 1735628096 278 IENIPVACVI 287
Cdd:COG1233   301 FRYSPSAFKL 310
PLN02487 PLN02487
zeta-carotene desaturase
 8-430 1.07e-21

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 97.56  E-value: 1.07e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATF-DFDGLPIERYYH--FICKTDdpLFALLSRYGLSDKLHWTD 84
Cdd:PLN02487   79 AIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFvDKNGNHIEMGLHvfFGCYNN--LFRLMKKVGADENLLVKD 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  85 TKMGYFYNGKL-------YKWGTPF----ALLGFPHLGPISKLRYALH----------VMYTKGIKDWTALDKVNATTWI 143
Cdd:PLN02487  157 HTHTFVNKGGDvgeldfrFPVGAPLhgikAFLTTNQLEPYDKARNALAlatspvvralVDPDGAMRDIRDLDDISFSDWF 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 144 RKWIGDK-AYDVMWKD-AFRLKFFEYrDNLSASWIGTRIKRIAL-SRRSLmhesLGYLDGG-SMTLLDKMAADITARGGR 219
Cdd:PLN02487  237 TSHGGTRmSIKRMWDPiAYALGFIDC-DNISARCMLTIFSLFATkTEASL----LRMLKGSpDVRLSGPIAKYITDRGGR 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 220 ILLSQGIDEVVSENGS-----VSGVRAGG----QFVAYDGVVSTAPiqyVPAMVPGLPP-----DFSAQIRAIENIPVAC 285
Cdd:PLN02487  312 FHLRWGCREILYDKSPdgetyVTGLKVSKatekEIVKADAYVAACD---VPGIKRLLPEqwreyEFFDNIYKLVGVPVVT 388

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 286 VILKLKQPISEnfwMN--ISDPSIAIPGVIE------------YSNLNPTTP-----PGQKILYAPFYMPKThPKWSMSN 346
Cdd:PLN02487  389 VQLRYNGWVTE---MQdlELSRQLRRAAGLDnllysadadfscFADLALTSPedyykEGEGSLIQAVLTPGD-PYMPLSN 464

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 347 DALIEEVLGYLPKLNPS---FERDW--VLATHCHRYEFAqticpPGFQDRLPAMHTPLNGFFMADTayYYPEDRSIS--- 418
Cdd:PLN02487  465 DKIVEKVHKQVLELFPSsrgLEVTWssVVKIGQSLYREA-----PGMDPFRPDQKTPISNFFLAGS--YTKQDYIDSmeg 537

                         490
                  ....*....|....*
gi 1735628096 419 ---ESLQAADRLAEA 430
Cdd:PLN02487  538 atlSGRQAAAYICEA 552
PRK07208 PRK07208
hypothetical protein; Provisional
 1-307 6.58e-19

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 88.79  E-value: 6.58e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   1 MTSKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYH-FICKTDD---------PLFAL 70
Cdd:PRK07208    1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHrFFSKSPEvmdlwneilPDDDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  71 LSRYGLSdklhwtdtKMgyFYNGKLYkwgtPFALLGFP---HLGPISKLRYALHVMYTKGIKdwtALDKVNATTWIRKWI 147
Cdd:PRK07208   81 LLRPRLS--------RI--YYRGKFF----DYPLKAFDalkNLGLWRTAKCGASYLKARLRP---RKEEDSFEDWVINRF 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 148 GDKAYDVmwkdafrlkFFEYR---------DNLSASWIGTRIKRIALSR--RSLMHESLGYLDGGSM---TLLDK----- 208
Cdd:PRK07208  144 GRRLYST---------FFKGYtekvwgvpcDEISADWAAQRIKGLSLGKaiRNALRRSLGLKRRNKEvetSLIEEfrypk 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 209 ---------MAADITARGGRILLSQGIDEVVSENG----SVSGVRAGGQFVAYDG--VVSTAPIQ-YVPAMVPGLPPDFS 272
Cdd:PRK07208  215 lgpgqlwetAAEKLEALGGKVVLNAKVVGLHHDGDgriaVVVVNDTDGTEETVTAdqVISSMPLReLVAALDPPPPPEVR 294

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1735628096 273 AQIRAI---ENIPVAcVILKlKQPISENFWMNISDPSI 307
Cdd:PRK07208  295 AAAAGLryrDFITVG-LLVK-ELNLFPDNWIYIHDPDV 330
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 5-290 1.00e-12

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 69.49  E-value: 1.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   5 KHYAIVGAGPMGLMAAVRL--LDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYH-FICKTDDpLFALLSRYGLSDKLH 81
Cdd:PRK11883    1 KKVAIIGGGITGLSAAYRLhkKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPEsFLARKPS-APALVKELGLEDELV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  82 WTDTKMGY-FYNGKLYK---W---GTPFALLGFPHLGPIS---KLRYALhvmytkgikDWTaldkvnattwIRKWIGDKa 151
Cdd:PRK11883   80 ANTTGQSYiYVNGKLHPippGtvmGIPTSIAPFLFAGLVSpigKLRAAA---------DLR----------PPRWKPGQ- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 152 yDVMWKDAFRLKF-FEYRDNL-----------SASWIGTR-----IKR--------IALSRRSLMHES------LGYLDG 200
Cdd:PRK11883  140 -DQSVGAFFRRRFgDEVVENLiepllsgiyagDIDTLSLRatfpqLAQaedkygslLRGMRKALPKEKkktkgvFGTLKG 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 201 GSMTLLDKMAADITArgGRILLSQGIDEVVSENGSVSGVRAGGQFVAYDGVVSTAPIQYVPAMvpGLPPDFSAQIRAIEN 280
Cdd:PRK11883  219 GLQSLIEALEEKLPA--GTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVAPPAFALFKTIPS 294

                         330
                  ....*....|
gi 1735628096 281 IPVACVILKL 290
Cdd:PRK11883  295 TSVATVALAF 304
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 3-42 6.26e-11

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 64.00  E-value: 6.26e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1735628096   3 SKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGM 42
Cdd:COG0493   120 TGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGGL 159
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
9-74 1.52e-10

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 56.77  E-value: 1.52e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDP-LFALLSRY 74
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIFHGSDEPnVRDLLDEL 67
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 8-41 4.39e-10

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 61.33  E-value: 4.39e-10
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGG 41
Cdd:PRK12810  147 AVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 3-41 3.72e-09

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 58.27  E-value: 3.72e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1735628096   3 SKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGG 41
Cdd:PRK11749  139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 1-41 1.47e-07

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 53.33  E-value: 1.47e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1735628096   1 MTSKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGG 41
Cdd:COG2072     3 ATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG 43
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 3-42 2.62e-07

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 52.81  E-value: 2.62e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1735628096   3 SKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGM 42
Cdd:PRK12814  192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM 231
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
8-40 9.72e-07

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 50.82  E-value: 9.72e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIG 40
Cdd:COG2081     1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVG 33
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 5-42 9.88e-07

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 51.03  E-value: 9.88e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1735628096   5 KHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGM 42
Cdd:PRK12771  138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM 175
PLN02612 PLN02612
phytoene desaturase
 9-283 2.17e-06

phytoene desaturase


Pssm-ID: 215330 [Multi-domain]  Cd Length: 567  Bit Score: 49.84  E-value: 2.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATF-DFDGLPIERYYHFICKTDDPLFALLSRYGLSDKLHWTDTKM 87
Cdd:PLN02612   98 IAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWkDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSM 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096  88 GYFYNGKLYKwgtpFALLGFPHLGPI------------------SKLRYALHVM--YTKGIKDWTALDKVNATTWIRKW- 146
Cdd:PLN02612  178 IFAMPNKPGE----FSRFDFPEVLPAplngiwailrnnemltwpEKIKFAIGLLpaIVGGQAYVEAQDGLSVKEWMRKQg 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 147 ----IGDKAYDVMWKdafRLKFFEyRDNLSASWIgtrikRIALSRrsLMHESLG----YLDGGSMTLLDKMAAD-ITARG 217
Cdd:PLN02612  254 vpdrVNDEVFIAMSK---ALNFIN-PDELSMQCI-----LIALNR--FLQEKHGskmaFLDGNPPERLCMPIVDhFQSLG 322

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096 218 GRILLSQGIDEVV-SENGSVSGVR-AGGQFVAYDGVVSTAPIQYVPAMVPG--LPPDFSAQIRAIENIPV 283
Cdd:PLN02612  323 GEVRLNSRIKKIElNDDGTVKHFLlTNGSVVEGDVYVSATPVDILKLLLPDqwKEIPYFKKLDKLVGVPV 392
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
1-71 7.27e-06

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 47.80  E-value: 7.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   1 MTSKKhYAIVGAGPMGLMAAvRLLDAGHSVDIYERDDRIGGMSATFDFDG----LPI--------ERYYHFICKtddpLF 68
Cdd:COG2907     1 MARMR-IAVIGSGISGLTAA-WLLSRRHDVTLFEANDRLGGHTHTVDVDLdgrtVPVdtgfivfnERTYPNLTA----LF 74


                  ...
gi 1735628096  69 ALL 71
Cdd:COG2907    75 AEL 77
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 8-40 8.87e-06

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 47.24  E-value: 8.87e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIG 40
Cdd:COG0654     7 LIVGGGPAGLALALALARAGIRVTVVERAPPPR 39
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
 3-42 1.45e-05

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 47.16  E-value: 1.45e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1735628096   3 SKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGM 42
Cdd:PLN02172    9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 4-120 1.80e-05

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 46.75  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRL----LDAGHSVDIYERDDRIGGMSATFDFDGLPIERYYHFICKTDDPLFALLSRYGLSDK 79
Cdd:TIGR00562   2 KKHVVIIGGGISGLCAAYYLekeiPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1735628096  80 LHWTDTKMGYFY--NGKLYkwGTPFALLGFPHLGPIS---KLRYAL 120
Cdd:TIGR00562  82 LVSDATGQRYVLvnRGKLM--PVPTKIAPFVKTGLFSlggKLRAGM 125
HI0933_like pfam03486
HI0933-like protein;
8-40 3.19e-05

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 46.03  E-value: 3.19e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIG 40
Cdd:pfam03486   4 IVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLG 36
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
1-42 5.91e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 45.33  E-value: 5.91e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1735628096   1 MTSK-KHYAIVGAGPMGLMAAVRLLDAGH---SVDIYERDDRIG-GM 42
Cdd:COG4529     1 MTGArKRIAIIGGGASGTALAIHLLRRAPeplRITLFEPRPELGrGV 47
PLN02268 PLN02268
probable polyamine oxidase
 9-83 7.00e-05

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 45.06  E-value: 7.00e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSAT-FDFdGLPIE---RYYHFICKtDDPLFALLSRYGLsdKLHWT 83
Cdd:PLN02268    5 VIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTdYSF-GFPVDmgaSWLHGVCN-ENPLAPLIGRLGL--PLYRT 79
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
4-43 1.38e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 43.74  E-value: 1.38e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMS 43
Cdd:COG0665     2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGAS 41
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 8-42 1.45e-04

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 43.82  E-value: 1.45e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGM 42
Cdd:PRK12770   22 AIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGL 56
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 6-41 2.02e-04

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 43.16  E-value: 2.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1735628096   6 HYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGG 41
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGS 36
PRK13984 PRK13984
putative oxidoreductase; Provisional
 5-42 2.58e-04

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 43.22  E-value: 2.58e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1735628096   5 KHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGM 42
Cdd:PRK13984  284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGV 321
PLN02676 PLN02676
polyamine oxidase
 9-76 4.52e-04

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 42.39  E-value: 4.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1735628096   9 IVGAGPMGLMAAVRLLDAG-HSVDIYERDDRIGGMSATFDFDGLPIERYYHFIC----KTDDPLFALLSRYGL 76
Cdd:PLN02676   31 IVGAGMSGISAAKTLSEAGiEDILILEATDRIGGRMRKANFAGVSVELGANWVEgvggPESNPIWELANKLKL 103
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
9-51 7.94e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 41.77  E-value: 7.94e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSATFD--FDGL 51
Cdd:COG1148   145 VIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRAAQLHktFPGL 189
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
8-39 8.81e-04

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 41.43  E-value: 8.81e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYERDDRI 39
Cdd:PRK06183   14 VIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 4-52 1.38e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 41.16  E-value: 1.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMsATFdfdGLP 52
Cdd:PRK12809  310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTF---GIP 354
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
9-51 1.70e-03

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 40.55  E-value: 1.70e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERD--DRIGGMsATFDFDGL 51
Cdd:COG3573    10 VVGAGLAGLVAAAELADAGRRVLLLDQEpeANLGGQ-AFWSFGGL 53
PLN02976 PLN02976
amine oxidase
 4-41 2.89e-03

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 40.24  E-value: 2.89e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1735628096    4 KKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGG 41
Cdd:PLN02976   693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 4-36 3.24e-03

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 39.28  E-value: 3.24e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1735628096   4 KKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERD 36
Cdd:COG0569    95 KMHVIIIGAGRVGRSLARELEEEGHDVVVIDKD 127
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 9-40 3.80e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 39.22  E-value: 3.80e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIG 40
Cdd:TIGR02032   5 VVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36
PRK06847 PRK06847
hypothetical protein; Provisional
 1-37 4.12e-03

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 39.09  E-value: 4.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1735628096   1 MTSKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDD 37
Cdd:PRK06847    1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 9-43 4.75e-03

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 39.13  E-value: 4.75e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMS 43
Cdd:pfam12831   4 VVGGGPAGVAAAIAAARAGAKVLLVERRGFLGGML 38
PanE COG1893
Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of ...
 6-39 4.92e-03

Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 441497 [Multi-domain]  Cd Length: 305  Bit Score: 38.68  E-value: 4.92e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1735628096   6 HYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRI 39
Cdd:COG1893     2 KIAILGAGAIGGLLGARLARAGHDVTLVARGAHA 35
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 9-44 5.63e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 39.05  E-value: 5.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1735628096   9 IVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMSA 44
Cdd:COG1053     8 VVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGGHTA 43
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 3-52 5.86e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 38.96  E-value: 5.86e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1735628096   3 SKKHYAIVGAGPMGLMAAVRLLDAGHSVDIYERDDRIGGMsATFdfdGLP 52
Cdd:PRK12769  326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL-LTF---GIP 371
NAD_binding_9 pfam13454
FAD-NAD(P)-binding;
8-44 7.96e-03

FAD-NAD(P)-binding;


Pssm-ID: 433222 [Multi-domain]  Cd Length: 155  Bit Score: 36.87  E-value: 7.96e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1735628096   8 AIVGAGPMGLMAAVRLL----DAGHSVDIYERDDRIGGMSA 44
Cdd:pfam13454   1 AIVGGGPSGLALLERLLarapKRPLEITLFDPSPPGAGGVY 41
PRK07236 PRK07236
hypothetical protein; Provisional
 8-41 8.74e-03

hypothetical protein; Provisional


Pssm-ID: 235980 [Multi-domain]  Cd Length: 386  Bit Score: 37.98  E-value: 8.74e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1735628096   8 AIVGAGPMGLMAAVRLLDAGHSVDIYER-----DDRIGG 41
Cdd:PRK07236   10 VVIGGSLGGLFAALLLRRAGWDVDVFERsptelDGRGAG 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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