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Conserved domains on  [gi|1735221539|gb|KAA0063333|]
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protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucumis melo var. makuwa]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 44-646 2.06e-146

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 446.75  E-value: 2.06e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539  44 PTVGLEFNSFDEAYDFYNIYAKDVGFGIRVSNSWfRSK-KKERYRAKLSCSSAGFKKKSEA--NNPR-------PETRTG 113
Cdd:PLN03097   74 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSR-RSKtSREFIDAKFACSRYGTKREYDKsfNRPRarqtkqdPENGTG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 114 --------CPAMIIIRLIDIERWRIVEVELEHNH------PVSPQITRFYKSHKKMiLAAKKTQPQLhpvtevhtiklyr 179
Cdd:PLN03097  153 rrscaktdCKASMHVKRRPDGKWVIHSFVKEHNHellpaqAVSEQTRKMYAAMARQ-FAEYKNVVGL------------- 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 180 rtilnscnrssdvdQSEGISSVDHLKYLELKDGDGHALYNYFCRMKMTSPNFFYLMDLDNNGHLRNVFWADSRSKSAYCY 259
Cdd:PLN03097  219 --------------KNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGN 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 260 FCDTITIDTTCLTNRYEIPLISFVGVNNHGQSVLLGCGFIGFESVEYFVWILKAWLKCMLGRTPQVIITDQNKTLLAAVS 339
Cdd:PLN03097  285 FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVIS 364

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 340 EVFPKARHCYSMWYIMQRIPEKLGGL-EGYETMRSQLNETIFSSLKITEFETSWTNMIKHNGLGDNKWLQSLYEDRTLWA 418
Cdd:PLN03097  365 EVFPNAHHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWV 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 419 PVYLKDVFFAGLVPICANESFKAFFDGYLHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVQLKTRCNFELQLSKV 498
Cdd:PLN03097  445 PTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGV 524

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 499 YTKEIFSKFQSEVEGMYSCfNTRQVNVNGPIVTYIVKeriEVEGNEkevrSFEVLYETTEVDIRCICSLFNYKGYLCRHA 578
Cdd:PLN03097  525 YTHAVFKKFQVEVLGAVAC-HPKMESQDETSITFRVQ---DFEKNQ----DFTVTWNQTKLEVSCICRLFEYKGYLCRHA 596

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735221539 579 LNVFNYNGVEEIPARYILPRWCKDYKCRYPLDQRlsNTNVYSSTYQYSHILNFALPVVEEGAQSQERY 646
Cdd:PLN03097  597 LVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEE--SEQVQSRVQRYNDLCQRALKLSEEASLSQESY 662
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 44-646 2.06e-146

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 446.75  E-value: 2.06e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539  44 PTVGLEFNSFDEAYDFYNIYAKDVGFGIRVSNSWfRSK-KKERYRAKLSCSSAGFKKKSEA--NNPR-------PETRTG 113
Cdd:PLN03097   74 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSR-RSKtSREFIDAKFACSRYGTKREYDKsfNRPRarqtkqdPENGTG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 114 --------CPAMIIIRLIDIERWRIVEVELEHNH------PVSPQITRFYKSHKKMiLAAKKTQPQLhpvtevhtiklyr 179
Cdd:PLN03097  153 rrscaktdCKASMHVKRRPDGKWVIHSFVKEHNHellpaqAVSEQTRKMYAAMARQ-FAEYKNVVGL------------- 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 180 rtilnscnrssdvdQSEGISSVDHLKYLELKDGDGHALYNYFCRMKMTSPNFFYLMDLDNNGHLRNVFWADSRSKSAYCY 259
Cdd:PLN03097  219 --------------KNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGN 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 260 FCDTITIDTTCLTNRYEIPLISFVGVNNHGQSVLLGCGFIGFESVEYFVWILKAWLKCMLGRTPQVIITDQNKTLLAAVS 339
Cdd:PLN03097  285 FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVIS 364

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 340 EVFPKARHCYSMWYIMQRIPEKLGGL-EGYETMRSQLNETIFSSLKITEFETSWTNMIKHNGLGDNKWLQSLYEDRTLWA 418
Cdd:PLN03097  365 EVFPNAHHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWV 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 419 PVYLKDVFFAGLVPICANESFKAFFDGYLHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVQLKTRCNFELQLSKV 498
Cdd:PLN03097  445 PTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGV 524

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 499 YTKEIFSKFQSEVEGMYSCfNTRQVNVNGPIVTYIVKeriEVEGNEkevrSFEVLYETTEVDIRCICSLFNYKGYLCRHA 578
Cdd:PLN03097  525 YTHAVFKKFQVEVLGAVAC-HPKMESQDETSITFRVQ---DFEKNQ----DFTVTWNQTKLEVSCICRLFEYKGYLCRHA 596

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735221539 579 LNVFNYNGVEEIPARYILPRWCKDYKCRYPLDQRlsNTNVYSSTYQYSHILNFALPVVEEGAQSQERY 646
Cdd:PLN03097  597 LVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEE--SEQVQSRVQRYNDLCQRALKLSEEASLSQESY 662
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 58-143 6.64e-28

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 107.42  E-value: 6.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539  58 DFYNIYAKDVGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKS----EANNPRPETRTGCPAMIIIRLIDIERWRIVEV 133
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKqrtgEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 1735221539 134 ELEHNHPVSP 143
Cdd:pfam03101  81 VKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
563-588 6.46e-05

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 40.23  E-value: 6.46e-05
                           10        20
                   ....*....|....*....|....*.
gi 1735221539  563 CICSLFNYKGYLCRHALNVFNYNGVE 588
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 44-646 2.06e-146

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 446.75  E-value: 2.06e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539  44 PTVGLEFNSFDEAYDFYNIYAKDVGFGIRVSNSWfRSK-KKERYRAKLSCSSAGFKKKSEA--NNPR-------PETRTG 113
Cdd:PLN03097   74 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSR-RSKtSREFIDAKFACSRYGTKREYDKsfNRPRarqtkqdPENGTG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 114 --------CPAMIIIRLIDIERWRIVEVELEHNH------PVSPQITRFYKSHKKMiLAAKKTQPQLhpvtevhtiklyr 179
Cdd:PLN03097  153 rrscaktdCKASMHVKRRPDGKWVIHSFVKEHNHellpaqAVSEQTRKMYAAMARQ-FAEYKNVVGL------------- 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 180 rtilnscnrssdvdQSEGISSVDHLKYLELKDGDGHALYNYFCRMKMTSPNFFYLMDLDNNGHLRNVFWADSRSKSAYCY 259
Cdd:PLN03097  219 --------------KNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGN 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 260 FCDTITIDTTCLTNRYEIPLISFVGVNNHGQSVLLGCGFIGFESVEYFVWILKAWLKCMLGRTPQVIITDQNKTLLAAVS 339
Cdd:PLN03097  285 FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVIS 364

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 340 EVFPKARHCYSMWYIMQRIPEKLGGL-EGYETMRSQLNETIFSSLKITEFETSWTNMIKHNGLGDNKWLQSLYEDRTLWA 418
Cdd:PLN03097  365 EVFPNAHHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWV 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 419 PVYLKDVFFAGLVPICANESFKAFFDGYLHKHTSFKEFVDKYDLALHRKYHKEAVADLESRNLSVQLKTRCNFELQLSKV 498
Cdd:PLN03097  445 PTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGV 524

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 499 YTKEIFSKFQSEVEGMYSCfNTRQVNVNGPIVTYIVKeriEVEGNEkevrSFEVLYETTEVDIRCICSLFNYKGYLCRHA 578
Cdd:PLN03097  525 YTHAVFKKFQVEVLGAVAC-HPKMESQDETSITFRVQ---DFEKNQ----DFTVTWNQTKLEVSCICRLFEYKGYLCRHA 596

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1735221539 579 LNVFNYNGVEEIPARYILPRWCKDYKCRYPLDQRlsNTNVYSSTYQYSHILNFALPVVEEGAQSQERY 646
Cdd:PLN03097  597 LVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEE--SEQVQSRVQRYNDLCQRALKLSEEASLSQESY 662
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 58-143 6.64e-28

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 107.42  E-value: 6.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539  58 DFYNIYAKDVGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKS----EANNPRPETRTGCPAMIIIRLIDIERWRIVEV 133
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKqrtgEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 1735221539 134 ELEHNHPVSP 143
Cdd:pfam03101  81 VKEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 264-356 1.65e-27

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 106.58  E-value: 1.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735221539 264 ITIDTTCLTNRYEIPLISFVGVNNHGQSVLLGCGFIGFESVEYFVWIL---KAWLKCMLGRTPQVIITDQNKTLLAAVSE 340
Cdd:pfam10551   2 LLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAINL 81

                          90
                  ....*....|....*.
gi 1735221539 341 VFPKARHCYSMWYIMQ 356
Cdd:pfam10551  82 VFPEAQHRLCIFHINK 97
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
563-588 6.46e-05

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 40.23  E-value: 6.46e-05
                           10        20
                   ....*....|....*....|....*.
gi 1735221539  563 CICSLFNYKGYLCRHALNVFNYNGVE 588
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGLS 28
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 550-584 9.81e-03

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 34.32  E-value: 9.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1735221539 550 FEV-LYETTEVDIRCICSLFNYKGYLCRHALNVFNY 584
Cdd:pfam04434   1 YRVqLDLDGLEKASCSCPDFQLNGIPCKHALAVLLA 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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