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Conserved domains on  [gi|1732113679|gb|QEI60387|]
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Ycf1 [Christensenia aesculifolia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf1 super family cl42951
Ycf1; Provisional
 18-1618 1.46e-168

Ycf1; Provisional


The actual alignment was detected with superfamily member CHL00204:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 556.64  E-value: 1.46e-168
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   18 IGSAVLFGIYYGFLTTLPIGPSQIFSIRSFLLEGNLSGT----VAVSGLMIGQLLIYLSIYCSPLYILLVKPHLMTLLVL 93
Cdd:CHL00204    12 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTekkvSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLAL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   94 PYMFFHWF--RTKYLLNYKNLRHiSSISDPRLRIIFLDSLMFQLLNPFLLPNPVLSRLIQVVLYRYSNNFVFIISSLLGW 171
Cdd:CHL00204    92 PYLLFHFFwnNHKHFFDYGSTTR-NSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGW 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  172 LGGNLLFLNLAKLLLVRIEHDAPIL---------YLL--IKRVLYRTFSIIIFMSLCLHLGRAPVPLTSKKfLNEITLYD 240
Cdd:CHL00204   171 LIGHILFMKWVGLVLVWIQQNNSIRsnvlirsnkYLVseLRNSMARIFSILLFITCVYYLGRIPSPIFTKK-LKETSETE 249

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  241 QRLRKNPE---------------------------------------------------------DLLWIFLPWPNNFFD 263
Cdd:CHL00204   250 ERVESEEEtdveietasetkgtkqeqegsteedpspslfseeredpdkideteeirvngkekikkDLFWFEKPLVTLLFD 329

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  264 RSRWNRPLRYIENSRISHnsLVKKQVSDYFFNKCVTDGKQRISFTYLPSL--FISEKQLKNSFKdSNELMSSDDLYKKWI 341
Cdd:CHL00204   330 YKRWNRPFRYIKNDRFEN--AVRNEMSQYFFYTCQSDGKERISFTYPPSLstFWEMIQRKIPLF-TLEKLSSDELYNQWI 406

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  342 GDTLERKNILNNDLRARIESLKNGSDIHKIMEKRTGLCNSNGQE--LAKIYDPFLSSLFRIRIplskSPWLLPDIIDlrk 419
Cdd:CHL00204   407 YTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKeyLPKIYDPFLNGPYRGRI----KKLFSPSIIN--- 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  420 dyqnkdlgeeykKEYQNNFKD--WIStQYQGInrklfplpwdLLPKSGQRTFlfmfgKSKDKQI--KKLFNELNFLKTKH 495
Cdd:CHL00204   480 ------------ETSIKNNIEgvWIN-KIHGI----------LLNNTDYQEF-----EQKIDTFnkKSLSTEINESLTLI 531

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  496 NTVYItwEHVFKLPPIEQTLFFIYLKDENNSSNWSSFFD-TFSIDFTKLRDFSSMTQAISllphIQEIKKDLPR--YTLI 572
Cdd:CHL00204   532 NKFGA--EPKSSLNLKGLSLFSEPEQEKINSEEEIKIFKfLFDAVITDPNDQTIIKKSIG----IKEISKKVPRwsYKLI 605

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  573 ikaNRFDVVGGNND--------VRQRKVKNVGISVTK-------TKLKTRR--------VVKRFSKQSDFRRRILRGSLR 629
Cdd:CHL00204   606 ---DELEQLEGENEenvpsdhqIRSRKAKRVVIFTDNesnndiyTNLKDNQnsdqkdevALIRYSQQSDFRRGIIKGSMR 682

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  630 PRRRKILIWKMLQHKAHSPFFL------------------RVMETPTIPESSLKILEKRKSETNTIRIRGLLSSPKNITR 691
Cdd:CHL00204   683 AQRRKTVIWELFQANVHSPLFLdridklfffsfdisglmkKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  692 SKAdRLALAARFD-FYFAQSGRSLLLVIQSNFRKYVKLPVLIIGKNIGRILLFQFPEWNEDWTEWNREIHIKCTYDGTEF 770
Cdd:CHL00204   763 EKA-RIEIAEAWDsILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQL 841

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  771 SDTKLPGRWLREGLQIKIIYPFQLKPWHIQKRvkrlerteidihsQSVRDSNLRGKgisKQQKVTFSYLTAWGFQTNLPF 850
Cdd:CHL00204   842 SETEFPKNWLTDGIQIKILFPFYLKPWHRSKL-------------RSSHKDRMKKK---KKKKNDFCFLTVWGMETELPF 905

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  851 GTIKKQPSFWKPVRKKL---IKILRNNIALGTRQLSQLYSNLIQ---------LTNLSFIYKKLNNLPER-------YIQ 911
Cdd:CHL00204   906 GSPRKRPSFFEPIFKELkkkIRKFKKKYFLVLKILKERTKLFLKvsketkkwiIKSFLFLKRIIKELSKRnpillfgLRE 985

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  912 TNRLDETNEFNVQSIDTQITDEEITDQEKKEVTIDTLfndieklspntqdqpefeTQKNIlefnnllipKNANDGTKRII 991
Cdd:CHL00204   986 IYELNETKKEKDSIISNQMIHESSVQIRSMEWTNSSL------------------TEKKI---------KDLTDRTKTIR 1038

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  992 QQsflhkIEKRIELKEKDNQYSNIF---------ELMLKKQLVQIqqinlrLRRKNAQVIRKRYYFLRIILKKLNREIYN 1062
Cdd:CHL00204  1039 NQ-----IEKITKEKKKITNTINISpnktsydskIIESSKKIWQI------LKRRNTRLIRKSYYFIKFFIERIYIDIFL 1107

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1063 HSIFFLRFNIQLI------MLLKDVLKNS------NRIQHTHSNGDGILFPADQNKS-----------ITSISHAYILDR 1119
Cdd:CHL00204  1108 GIINIPRINTQLFlestkkIIDKYIYKNEenkekiNKKKQNTIHFISTIKKSLYNISnknknskifydLSSLSQAYVFYK 1187

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1120 LWQTKTPKLdlnYLVQSVKEHswvlkeypeqnesksenylSDTDTIISKDIQDLLMTQGI------NKEPQNFHEKDLNE 1193
Cdd:CHL00204  1188 LSQTQVINL---YKLRSVLQY-------------------NGTSFFLKNEIKDYFEAQGIfhsklkHKNLLNSGMNQWKN 1245

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1194 WLHDFRRYNLSSKLWYQIAPTNWRFEVTRH-------------WKINSLSLEKKKEDVSYN-----EQNTHSIYRRNPLL 1255
Cdd:CHL00204  1246 WLRSHYQYDLSQIRWSRLVPQKWRNRVNQDrmvqnkdlnkwdsYEKDRLIHYKKQNDFEANsllnqKDNFKKDYRYDLLS 1325

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1256 KQQINNYNKR----------YKYNTLLYSFVDFV------------------KNSEIKKLPIR----------------- 1290
Cdd:CHL00204  1326 YKSINYEDKKfqvnknqeisYNYNTRKVNLFDMPegiainnylgkgdildieKNPDRKYLDWRilnfslrkkvdieswvd 1405

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1291 -----KENTKEEVLTANRIKKI----RSLGGRKRKNIFYSQRTTIEK-KNDLDFKLMLWLFPEFIGETDKYGT------- 1353
Cdd:CHL00204  1406 tdsksKKNTKTGVNNYQIIDKIdhqdFENNQANKKKNFFDWMGMNEEiLNRPISNLEFWFFPEFVLLYNTYKIkpwiipi 1485

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1354 --------ETIFVPKNSILQEKNKIPLSEKY--------QKLRMSYWYERQKSKSE---------------------ELS 1396
Cdd:CHL00204  1486 kllllnlnGNENVNKKINQKKKGFIPSNEKKsieienrnQEEKEPAGQGELESDKEkkgnlesvlsnqeknieedyaESD 1565

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1397 LKERKN-----------------HYYLFQWRWKSkELGNRM----------QRLKDLAS-LLSVIENqqdltgfcREMKI 1448
Cdd:CHL00204  1566 IKKRKNkkqyksnteaeldfflkRYLRFQLRWND-FLNQRIinnikvycllLRLINPREiAISSIQR--------GEMSL 1636

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1449 DVNLL--NLFFTESKKKVLdqfLTISSHRLSKVLDDQILMYKMISTLL-----KFIDRFERR---IDGDIFSQCIPRLSL 1518
Cdd:CHL00204  1637 DIMMIqkNLTLTELMKKGI---LIIEPVRLSVKNDGQFIIYQTIGISLvhknkHQINQRYREkkyVDKKNFDESITKHQT 1713

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1519 INDKQDFVHwYNL---EDLLLPRRRRELRVLKSLILEKG---YTNSE-PWMRNVQK-TQTLN-----PPDQNQFI--KRF 1583
Cdd:CHL00204  1714 ITENRDKNH-YDLlvpENILSPKRRRELRILICFNSKNKnavDRNSVfCNEKNVKNcGQVLDkkkdlDKDKNKLIklKFF 1792

                         1930      1940      1950
                   ....*....|....*....|....*....|....*
gi 1732113679 1584 LWPIHRLEDLACMNRFWFNTSNGSRFTMLRIRIYP 1618
Cdd:CHL00204  1793 LWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYP 1827
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 18-1618 1.46e-168

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 556.64  E-value: 1.46e-168
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   18 IGSAVLFGIYYGFLTTLPIGPSQIFSIRSFLLEGNLSGT----VAVSGLMIGQLLIYLSIYCSPLYILLVKPHLMTLLVL 93
Cdd:CHL00204    12 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTekkvSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLAL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   94 PYMFFHWF--RTKYLLNYKNLRHiSSISDPRLRIIFLDSLMFQLLNPFLLPNPVLSRLIQVVLYRYSNNFVFIISSLLGW 171
Cdd:CHL00204    92 PYLLFHFFwnNHKHFFDYGSTTR-NSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGW 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  172 LGGNLLFLNLAKLLLVRIEHDAPIL---------YLL--IKRVLYRTFSIIIFMSLCLHLGRAPVPLTSKKfLNEITLYD 240
Cdd:CHL00204   171 LIGHILFMKWVGLVLVWIQQNNSIRsnvlirsnkYLVseLRNSMARIFSILLFITCVYYLGRIPSPIFTKK-LKETSETE 249

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  241 QRLRKNPE---------------------------------------------------------DLLWIFLPWPNNFFD 263
Cdd:CHL00204   250 ERVESEEEtdveietasetkgtkqeqegsteedpspslfseeredpdkideteeirvngkekikkDLFWFEKPLVTLLFD 329

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  264 RSRWNRPLRYIENSRISHnsLVKKQVSDYFFNKCVTDGKQRISFTYLPSL--FISEKQLKNSFKdSNELMSSDDLYKKWI 341
Cdd:CHL00204   330 YKRWNRPFRYIKNDRFEN--AVRNEMSQYFFYTCQSDGKERISFTYPPSLstFWEMIQRKIPLF-TLEKLSSDELYNQWI 406

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  342 GDTLERKNILNNDLRARIESLKNGSDIHKIMEKRTGLCNSNGQE--LAKIYDPFLSSLFRIRIplskSPWLLPDIIDlrk 419
Cdd:CHL00204   407 YTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKeyLPKIYDPFLNGPYRGRI----KKLFSPSIIN--- 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  420 dyqnkdlgeeykKEYQNNFKD--WIStQYQGInrklfplpwdLLPKSGQRTFlfmfgKSKDKQI--KKLFNELNFLKTKH 495
Cdd:CHL00204   480 ------------ETSIKNNIEgvWIN-KIHGI----------LLNNTDYQEF-----EQKIDTFnkKSLSTEINESLTLI 531

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  496 NTVYItwEHVFKLPPIEQTLFFIYLKDENNSSNWSSFFD-TFSIDFTKLRDFSSMTQAISllphIQEIKKDLPR--YTLI 572
Cdd:CHL00204   532 NKFGA--EPKSSLNLKGLSLFSEPEQEKINSEEEIKIFKfLFDAVITDPNDQTIIKKSIG----IKEISKKVPRwsYKLI 605

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  573 ikaNRFDVVGGNND--------VRQRKVKNVGISVTK-------TKLKTRR--------VVKRFSKQSDFRRRILRGSLR 629
Cdd:CHL00204   606 ---DELEQLEGENEenvpsdhqIRSRKAKRVVIFTDNesnndiyTNLKDNQnsdqkdevALIRYSQQSDFRRGIIKGSMR 682

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  630 PRRRKILIWKMLQHKAHSPFFL------------------RVMETPTIPESSLKILEKRKSETNTIRIRGLLSSPKNITR 691
Cdd:CHL00204   683 AQRRKTVIWELFQANVHSPLFLdridklfffsfdisglmkKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  692 SKAdRLALAARFD-FYFAQSGRSLLLVIQSNFRKYVKLPVLIIGKNIGRILLFQFPEWNEDWTEWNREIHIKCTYDGTEF 770
Cdd:CHL00204   763 EKA-RIEIAEAWDsILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQL 841

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  771 SDTKLPGRWLREGLQIKIIYPFQLKPWHIQKRvkrlerteidihsQSVRDSNLRGKgisKQQKVTFSYLTAWGFQTNLPF 850
Cdd:CHL00204   842 SETEFPKNWLTDGIQIKILFPFYLKPWHRSKL-------------RSSHKDRMKKK---KKKKNDFCFLTVWGMETELPF 905

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  851 GTIKKQPSFWKPVRKKL---IKILRNNIALGTRQLSQLYSNLIQ---------LTNLSFIYKKLNNLPER-------YIQ 911
Cdd:CHL00204   906 GSPRKRPSFFEPIFKELkkkIRKFKKKYFLVLKILKERTKLFLKvsketkkwiIKSFLFLKRIIKELSKRnpillfgLRE 985

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  912 TNRLDETNEFNVQSIDTQITDEEITDQEKKEVTIDTLfndieklspntqdqpefeTQKNIlefnnllipKNANDGTKRII 991
Cdd:CHL00204   986 IYELNETKKEKDSIISNQMIHESSVQIRSMEWTNSSL------------------TEKKI---------KDLTDRTKTIR 1038

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  992 QQsflhkIEKRIELKEKDNQYSNIF---------ELMLKKQLVQIqqinlrLRRKNAQVIRKRYYFLRIILKKLNREIYN 1062
Cdd:CHL00204  1039 NQ-----IEKITKEKKKITNTINISpnktsydskIIESSKKIWQI------LKRRNTRLIRKSYYFIKFFIERIYIDIFL 1107

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1063 HSIFFLRFNIQLI------MLLKDVLKNS------NRIQHTHSNGDGILFPADQNKS-----------ITSISHAYILDR 1119
Cdd:CHL00204  1108 GIINIPRINTQLFlestkkIIDKYIYKNEenkekiNKKKQNTIHFISTIKKSLYNISnknknskifydLSSLSQAYVFYK 1187

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1120 LWQTKTPKLdlnYLVQSVKEHswvlkeypeqnesksenylSDTDTIISKDIQDLLMTQGI------NKEPQNFHEKDLNE 1193
Cdd:CHL00204  1188 LSQTQVINL---YKLRSVLQY-------------------NGTSFFLKNEIKDYFEAQGIfhsklkHKNLLNSGMNQWKN 1245

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1194 WLHDFRRYNLSSKLWYQIAPTNWRFEVTRH-------------WKINSLSLEKKKEDVSYN-----EQNTHSIYRRNPLL 1255
Cdd:CHL00204  1246 WLRSHYQYDLSQIRWSRLVPQKWRNRVNQDrmvqnkdlnkwdsYEKDRLIHYKKQNDFEANsllnqKDNFKKDYRYDLLS 1325

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1256 KQQINNYNKR----------YKYNTLLYSFVDFV------------------KNSEIKKLPIR----------------- 1290
Cdd:CHL00204  1326 YKSINYEDKKfqvnknqeisYNYNTRKVNLFDMPegiainnylgkgdildieKNPDRKYLDWRilnfslrkkvdieswvd 1405

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1291 -----KENTKEEVLTANRIKKI----RSLGGRKRKNIFYSQRTTIEK-KNDLDFKLMLWLFPEFIGETDKYGT------- 1353
Cdd:CHL00204  1406 tdsksKKNTKTGVNNYQIIDKIdhqdFENNQANKKKNFFDWMGMNEEiLNRPISNLEFWFFPEFVLLYNTYKIkpwiipi 1485

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1354 --------ETIFVPKNSILQEKNKIPLSEKY--------QKLRMSYWYERQKSKSE---------------------ELS 1396
Cdd:CHL00204  1486 kllllnlnGNENVNKKINQKKKGFIPSNEKKsieienrnQEEKEPAGQGELESDKEkkgnlesvlsnqeknieedyaESD 1565

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1397 LKERKN-----------------HYYLFQWRWKSkELGNRM----------QRLKDLAS-LLSVIENqqdltgfcREMKI 1448
Cdd:CHL00204  1566 IKKRKNkkqyksnteaeldfflkRYLRFQLRWND-FLNQRIinnikvycllLRLINPREiAISSIQR--------GEMSL 1636

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1449 DVNLL--NLFFTESKKKVLdqfLTISSHRLSKVLDDQILMYKMISTLL-----KFIDRFERR---IDGDIFSQCIPRLSL 1518
Cdd:CHL00204  1637 DIMMIqkNLTLTELMKKGI---LIIEPVRLSVKNDGQFIIYQTIGISLvhknkHQINQRYREkkyVDKKNFDESITKHQT 1713

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1519 INDKQDFVHwYNL---EDLLLPRRRRELRVLKSLILEKG---YTNSE-PWMRNVQK-TQTLN-----PPDQNQFI--KRF 1583
Cdd:CHL00204  1714 ITENRDKNH-YDLlvpENILSPKRRRELRILICFNSKNKnavDRNSVfCNEKNVKNcGQVLDkkkdlDKDKNKLIklKFF 1792

                         1930      1940      1950
                   ....*....|....*....|....*....|....*
gi 1732113679 1584 LWPIHRLEDLACMNRFWFNTSNGSRFTMLRIRIYP 1618
Cdd:CHL00204  1793 LWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYP 1827
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-863 4.92e-128

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 423.93  E-value: 4.92e-128
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   22 VLFGIYYGFLTTLPIGPSQIFSIRSFLLEGNLSGT----VAVSGLMIGQLLIYLSIYCSPLYILLVKPHLMTLLVLPYMF 97
Cdd:pfam05758    2 VVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTekkvSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   98 FHWF--RTKYLLNYKNLRHiSSISDPRLRIIFLDSLMFQLLNPFLLPNPVLSRLIQVVLYRYSNNFVFIISSLLGWLGGN 175
Cdd:pfam05758   82 FHFFwnNHKHFFDYGSTTR-NSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  176 LLFLNLAKLLLVRIEHDAPI-----------LYLLIKRVLYRTFSIIIFMSLCLHLGRAPVPLTSKKfLNEITLYDQRLR 244
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIrsnvlirsnkyLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKK-LKETSETEERYE 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  245 KNPE---------------------------------------------------------------------------- 248
Cdd:pfam05758  240 SEEEtdveiettsetkgtkqeqersteedpspslfseegedldkideteeirvngkdkikdefhfhfretcyknspiyet 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  249 ----------------------DLLWIFLPWPNNFFDRSRWNRPLRYIENSRISHnsLVKKQVSDYFFNKCVTDGKQRIS 306
Cdd:pfam05758  320 syldgnqenskleilkekkknkNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFEN--AVRNEMSQYFFYTCQSDGKERIS 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  307 FTYLPSLFISEKQLKNSFKD-SNELMSSDDLYKKWIGDTLERKNILNNDLRARIESLKNGSDIHKIMEKRTGLCNSNGQE 385
Cdd:pfam05758  398 FTYPPSLSTFFEMIQKKIPLfTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  386 --LAKIYDPFLSSLFRIRIPLSKSPwllpDIIDlrkdyqnkdlgeeyKKEYQNNFKDWISTQYQGInrkLFPLPWdllPK 463
Cdd:pfam05758  478 eyLPKIYDPFLNGPYRGRIKKVFSP----SIIN--------------KTSRKNSLEGVWINKIHGI---LLSSNY---PE 533

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  464 SGQRTFLFMfGKSKDKQIKKLFNELNFLktkhntvyiTWEHVFKLPPIEQTLFFIYLKDENNSSNWSSFFD-TFSIDFTK 542
Cdd:pfam05758  534 FEQKINIFD-RKSLSTEIDYFLNLINEF---------SKKSVSSLNFKGLSLFPEQEQVKINSEEEKKILKfLFDAVRTD 603

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  543 LRDFSSMTQAISllphIQEIKKDLPRYTLIIKANRFDVVGGNND-------VRQRKVKNVGISVTKTK------------ 603
Cdd:pfam05758  604 SNEKTIRKKSIG----IKEINKKVPRWSYKLIDELEQLEGENEEnvaedyqIRSRKAKRVVIFTDNQKnydtynntkdtd 679

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  604 ---LKTRRVVKRFSKQSDFRRRILRGSLRPRRRKILIWKMLQHKAHSPFFLRVMETP------------------TIPES 662
Cdd:pfam05758  680 nseQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKPlffsfdifglikiifknwMRKKE 759

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  663 SLKILEKRKSETNTIRIRGLLSSPKNiTRSKADRLALAARFD-FYFAQSGRSLLLVIQSNFRKYVKLPVLIIGKNIGRIL 741
Cdd:pfam05758  760 EFKISSYTEEKTKESSKKEEDKKEDN-KREERARIEIAEAWDsILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRML 838

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  742 LFQFPEWNEDWTEWNREIHIKCTYDGTEFSDTKLPGRWLREGLQIKIIYPFQLKPWHIQKRvkrlerteidihsQSVRDS 821
Cdd:pfam05758  839 FFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKNWLTDGIQIKILFPFRLKPWHKSKL-------------RSSEKD 905

                          970       980       990      1000
                   ....*....|....*....|....*....|....*....|..
gi 1732113679  822 NLRGKGiskqQKVTFSYLTAWGFQTNLPFGTIKKQPSFWKPV 863
Cdd:pfam05758  906 LMKKKV----QKNDFCFLTVWGMETELPFGSPRKRPSFFEPI 943
RhtB COG1280
Threonine/homoserine/homoserine lactone efflux protein [Amino acid transport and metabolism];
16-138 7.54e-03

Threonine/homoserine/homoserine lactone efflux protein [Amino acid transport and metabolism];


Pssm-ID: 440891  Cd Length: 205  Bit Score: 39.44  E-value: 7.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   16 MWIGSAVLFGIYyGFLTTLPIGPSQIFSIRSFLLEGNLSGTVAVSGLMIGqLLIYLSIYCSPLYILLVK-PHLMTLL--- 91
Cdd:COG1280      1 MSLELLLAFLLA-ALVLALTPGPDNLLVLSRGLRRGRRAGLAAALGIALG-DLVHILLAALGLAALLAAsPLLFTVLkla 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1732113679   92 -VLpYMFfhWFRTKYLLNYKNLRHISSISDPRLRIIFLDSLMFQLLNP 138
Cdd:COG1280     79 gAA-YLL--YLGWKLLRSAGRPLAAEAAAAASARRLFRQGFLLNLLNP 123
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 18-1618 1.46e-168

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 556.64  E-value: 1.46e-168
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   18 IGSAVLFGIYYGFLTTLPIGPSQIFSIRSFLLEGNLSGT----VAVSGLMIGQLLIYLSIYCSPLYILLVKPHLMTLLVL 93
Cdd:CHL00204    12 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTekkvSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLAL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   94 PYMFFHWF--RTKYLLNYKNLRHiSSISDPRLRIIFLDSLMFQLLNPFLLPNPVLSRLIQVVLYRYSNNFVFIISSLLGW 171
Cdd:CHL00204    92 PYLLFHFFwnNHKHFFDYGSTTR-NSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGW 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  172 LGGNLLFLNLAKLLLVRIEHDAPIL---------YLL--IKRVLYRTFSIIIFMSLCLHLGRAPVPLTSKKfLNEITLYD 240
Cdd:CHL00204   171 LIGHILFMKWVGLVLVWIQQNNSIRsnvlirsnkYLVseLRNSMARIFSILLFITCVYYLGRIPSPIFTKK-LKETSETE 249

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  241 QRLRKNPE---------------------------------------------------------DLLWIFLPWPNNFFD 263
Cdd:CHL00204   250 ERVESEEEtdveietasetkgtkqeqegsteedpspslfseeredpdkideteeirvngkekikkDLFWFEKPLVTLLFD 329

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  264 RSRWNRPLRYIENSRISHnsLVKKQVSDYFFNKCVTDGKQRISFTYLPSL--FISEKQLKNSFKdSNELMSSDDLYKKWI 341
Cdd:CHL00204   330 YKRWNRPFRYIKNDRFEN--AVRNEMSQYFFYTCQSDGKERISFTYPPSLstFWEMIQRKIPLF-TLEKLSSDELYNQWI 406

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  342 GDTLERKNILNNDLRARIESLKNGSDIHKIMEKRTGLCNSNGQE--LAKIYDPFLSSLFRIRIplskSPWLLPDIIDlrk 419
Cdd:CHL00204   407 YTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKeyLPKIYDPFLNGPYRGRI----KKLFSPSIIN--- 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  420 dyqnkdlgeeykKEYQNNFKD--WIStQYQGInrklfplpwdLLPKSGQRTFlfmfgKSKDKQI--KKLFNELNFLKTKH 495
Cdd:CHL00204   480 ------------ETSIKNNIEgvWIN-KIHGI----------LLNNTDYQEF-----EQKIDTFnkKSLSTEINESLTLI 531

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  496 NTVYItwEHVFKLPPIEQTLFFIYLKDENNSSNWSSFFD-TFSIDFTKLRDFSSMTQAISllphIQEIKKDLPR--YTLI 572
Cdd:CHL00204   532 NKFGA--EPKSSLNLKGLSLFSEPEQEKINSEEEIKIFKfLFDAVITDPNDQTIIKKSIG----IKEISKKVPRwsYKLI 605

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  573 ikaNRFDVVGGNND--------VRQRKVKNVGISVTK-------TKLKTRR--------VVKRFSKQSDFRRRILRGSLR 629
Cdd:CHL00204   606 ---DELEQLEGENEenvpsdhqIRSRKAKRVVIFTDNesnndiyTNLKDNQnsdqkdevALIRYSQQSDFRRGIIKGSMR 682

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  630 PRRRKILIWKMLQHKAHSPFFL------------------RVMETPTIPESSLKILEKRKSETNTIRIRGLLSSPKNITR 691
Cdd:CHL00204   683 AQRRKTVIWELFQANVHSPLFLdridklfffsfdisglmkKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  692 SKAdRLALAARFD-FYFAQSGRSLLLVIQSNFRKYVKLPVLIIGKNIGRILLFQFPEWNEDWTEWNREIHIKCTYDGTEF 770
Cdd:CHL00204   763 EKA-RIEIAEAWDsILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQL 841

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  771 SDTKLPGRWLREGLQIKIIYPFQLKPWHIQKRvkrlerteidihsQSVRDSNLRGKgisKQQKVTFSYLTAWGFQTNLPF 850
Cdd:CHL00204   842 SETEFPKNWLTDGIQIKILFPFYLKPWHRSKL-------------RSSHKDRMKKK---KKKKNDFCFLTVWGMETELPF 905

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  851 GTIKKQPSFWKPVRKKL---IKILRNNIALGTRQLSQLYSNLIQ---------LTNLSFIYKKLNNLPER-------YIQ 911
Cdd:CHL00204   906 GSPRKRPSFFEPIFKELkkkIRKFKKKYFLVLKILKERTKLFLKvsketkkwiIKSFLFLKRIIKELSKRnpillfgLRE 985

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  912 TNRLDETNEFNVQSIDTQITDEEITDQEKKEVTIDTLfndieklspntqdqpefeTQKNIlefnnllipKNANDGTKRII 991
Cdd:CHL00204   986 IYELNETKKEKDSIISNQMIHESSVQIRSMEWTNSSL------------------TEKKI---------KDLTDRTKTIR 1038

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  992 QQsflhkIEKRIELKEKDNQYSNIF---------ELMLKKQLVQIqqinlrLRRKNAQVIRKRYYFLRIILKKLNREIYN 1062
Cdd:CHL00204  1039 NQ-----IEKITKEKKKITNTINISpnktsydskIIESSKKIWQI------LKRRNTRLIRKSYYFIKFFIERIYIDIFL 1107

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1063 HSIFFLRFNIQLI------MLLKDVLKNS------NRIQHTHSNGDGILFPADQNKS-----------ITSISHAYILDR 1119
Cdd:CHL00204  1108 GIINIPRINTQLFlestkkIIDKYIYKNEenkekiNKKKQNTIHFISTIKKSLYNISnknknskifydLSSLSQAYVFYK 1187

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1120 LWQTKTPKLdlnYLVQSVKEHswvlkeypeqnesksenylSDTDTIISKDIQDLLMTQGI------NKEPQNFHEKDLNE 1193
Cdd:CHL00204  1188 LSQTQVINL---YKLRSVLQY-------------------NGTSFFLKNEIKDYFEAQGIfhsklkHKNLLNSGMNQWKN 1245

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1194 WLHDFRRYNLSSKLWYQIAPTNWRFEVTRH-------------WKINSLSLEKKKEDVSYN-----EQNTHSIYRRNPLL 1255
Cdd:CHL00204  1246 WLRSHYQYDLSQIRWSRLVPQKWRNRVNQDrmvqnkdlnkwdsYEKDRLIHYKKQNDFEANsllnqKDNFKKDYRYDLLS 1325

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1256 KQQINNYNKR----------YKYNTLLYSFVDFV------------------KNSEIKKLPIR----------------- 1290
Cdd:CHL00204  1326 YKSINYEDKKfqvnknqeisYNYNTRKVNLFDMPegiainnylgkgdildieKNPDRKYLDWRilnfslrkkvdieswvd 1405

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1291 -----KENTKEEVLTANRIKKI----RSLGGRKRKNIFYSQRTTIEK-KNDLDFKLMLWLFPEFIGETDKYGT------- 1353
Cdd:CHL00204  1406 tdsksKKNTKTGVNNYQIIDKIdhqdFENNQANKKKNFFDWMGMNEEiLNRPISNLEFWFFPEFVLLYNTYKIkpwiipi 1485

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1354 --------ETIFVPKNSILQEKNKIPLSEKY--------QKLRMSYWYERQKSKSE---------------------ELS 1396
Cdd:CHL00204  1486 kllllnlnGNENVNKKINQKKKGFIPSNEKKsieienrnQEEKEPAGQGELESDKEkkgnlesvlsnqeknieedyaESD 1565

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1397 LKERKN-----------------HYYLFQWRWKSkELGNRM----------QRLKDLAS-LLSVIENqqdltgfcREMKI 1448
Cdd:CHL00204  1566 IKKRKNkkqyksnteaeldfflkRYLRFQLRWND-FLNQRIinnikvycllLRLINPREiAISSIQR--------GEMSL 1636

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1449 DVNLL--NLFFTESKKKVLdqfLTISSHRLSKVLDDQILMYKMISTLL-----KFIDRFERR---IDGDIFSQCIPRLSL 1518
Cdd:CHL00204  1637 DIMMIqkNLTLTELMKKGI---LIIEPVRLSVKNDGQFIIYQTIGISLvhknkHQINQRYREkkyVDKKNFDESITKHQT 1713

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679 1519 INDKQDFVHwYNL---EDLLLPRRRRELRVLKSLILEKG---YTNSE-PWMRNVQK-TQTLN-----PPDQNQFI--KRF 1583
Cdd:CHL00204  1714 ITENRDKNH-YDLlvpENILSPKRRRELRILICFNSKNKnavDRNSVfCNEKNVKNcGQVLDkkkdlDKDKNKLIklKFF 1792

                         1930      1940      1950
                   ....*....|....*....|....*....|....*
gi 1732113679 1584 LWPIHRLEDLACMNRFWFNTSNGSRFTMLRIRIYP 1618
Cdd:CHL00204  1793 LWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYP 1827
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-863 4.92e-128

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 423.93  E-value: 4.92e-128
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   22 VLFGIYYGFLTTLPIGPSQIFSIRSFLLEGNLSGT----VAVSGLMIGQLLIYLSIYCSPLYILLVKPHLMTLLVLPYMF 97
Cdd:pfam05758    2 VVVGLYYGFLTTFSIGPSYLFLLRARVMEEGEEGTekkvSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   98 FHWF--RTKYLLNYKNLRHiSSISDPRLRIIFLDSLMFQLLNPFLLPNPVLSRLIQVVLYRYSNNFVFIISSLLGWLGGN 175
Cdd:pfam05758   82 FHFFwnNHKHFFDYGSTTR-NSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  176 LLFLNLAKLLLVRIEHDAPI-----------LYLLIKRVLYRTFSIIIFMSLCLHLGRAPVPLTSKKfLNEITLYDQRLR 244
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIrsnvlirsnkyLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKK-LKETSETEERYE 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  245 KNPE---------------------------------------------------------------------------- 248
Cdd:pfam05758  240 SEEEtdveiettsetkgtkqeqersteedpspslfseegedldkideteeirvngkdkikdefhfhfretcyknspiyet 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  249 ----------------------DLLWIFLPWPNNFFDRSRWNRPLRYIENSRISHnsLVKKQVSDYFFNKCVTDGKQRIS 306
Cdd:pfam05758  320 syldgnqenskleilkekkknkNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFEN--AVRNEMSQYFFYTCQSDGKERIS 397

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  307 FTYLPSLFISEKQLKNSFKD-SNELMSSDDLYKKWIGDTLERKNILNNDLRARIESLKNGSDIHKIMEKRTGLCNSNGQE 385
Cdd:pfam05758  398 FTYPPSLSTFFEMIQKKIPLfTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKK 477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  386 --LAKIYDPFLSSLFRIRIPLSKSPwllpDIIDlrkdyqnkdlgeeyKKEYQNNFKDWISTQYQGInrkLFPLPWdllPK 463
Cdd:pfam05758  478 eyLPKIYDPFLNGPYRGRIKKVFSP----SIIN--------------KTSRKNSLEGVWINKIHGI---LLSSNY---PE 533

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  464 SGQRTFLFMfGKSKDKQIKKLFNELNFLktkhntvyiTWEHVFKLPPIEQTLFFIYLKDENNSSNWSSFFD-TFSIDFTK 542
Cdd:pfam05758  534 FEQKINIFD-RKSLSTEIDYFLNLINEF---------SKKSVSSLNFKGLSLFPEQEQVKINSEEEKKILKfLFDAVRTD 603

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  543 LRDFSSMTQAISllphIQEIKKDLPRYTLIIKANRFDVVGGNND-------VRQRKVKNVGISVTKTK------------ 603
Cdd:pfam05758  604 SNEKTIRKKSIG----IKEINKKVPRWSYKLIDELEQLEGENEEnvaedyqIRSRKAKRVVIFTDNQKnydtynntkdtd 679

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  604 ---LKTRRVVKRFSKQSDFRRRILRGSLRPRRRKILIWKMLQHKAHSPFFLRVMETP------------------TIPES 662
Cdd:pfam05758  680 nseQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKPlffsfdifglikiifknwMRKKE 759

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  663 SLKILEKRKSETNTIRIRGLLSSPKNiTRSKADRLALAARFD-FYFAQSGRSLLLVIQSNFRKYVKLPVLIIGKNIGRIL 741
Cdd:pfam05758  760 EFKISSYTEEKTKESSKKEEDKKEDN-KREERARIEIAEAWDsILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRML 838

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679  742 LFQFPEWNEDWTEWNREIHIKCTYDGTEFSDTKLPGRWLREGLQIKIIYPFQLKPWHIQKRvkrlerteidihsQSVRDS 821
Cdd:pfam05758  839 FFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKNWLTDGIQIKILFPFRLKPWHKSKL-------------RSSEKD 905

                          970       980       990      1000
                   ....*....|....*....|....*....|....*....|..
gi 1732113679  822 NLRGKGiskqQKVTFSYLTAWGFQTNLPFGTIKKQPSFWKPV 863
Cdd:pfam05758  906 LMKKKV----QKNDFCFLTVWGMETELPFGSPRKRPSFFEPI 943
RhtB COG1280
Threonine/homoserine/homoserine lactone efflux protein [Amino acid transport and metabolism];
16-138 7.54e-03

Threonine/homoserine/homoserine lactone efflux protein [Amino acid transport and metabolism];


Pssm-ID: 440891  Cd Length: 205  Bit Score: 39.44  E-value: 7.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113679   16 MWIGSAVLFGIYyGFLTTLPIGPSQIFSIRSFLLEGNLSGTVAVSGLMIGqLLIYLSIYCSPLYILLVK-PHLMTLL--- 91
Cdd:COG1280      1 MSLELLLAFLLA-ALVLALTPGPDNLLVLSRGLRRGRRAGLAAALGIALG-DLVHILLAALGLAALLAAsPLLFTVLkla 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1732113679   92 -VLpYMFfhWFRTKYLLNYKNLRHISSISDPRLRIIFLDSLMFQLLNP 138
Cdd:COG1280     79 gAA-YLL--YLGWKLLRSAGRPLAAEAAAAASARRLFRQGFLLNLLNP 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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