NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1732113622|gb|QEI60330|]
View 

photosystem I P700 apoprotein A1 [Christensenia aesculifolia]

Protein Classification

photosystem I core protein PsaA( domain architecture ID 10000059)

photosystem I core protein PsaA binds P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport

EC:  1.97.1.12
Gene Ontology:  GO:0016168|GO:0016020|GO:0015979|GO:0009522
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


:

Pssm-ID: 176996  Cd Length: 750  Bit Score: 1649.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPEVKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQLAI 80
Cdd:CHL00056    1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  81 ILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLYCTA 160
Cdd:CHL00056   81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 161 IGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHEY 240
Cdd:CHL00056  161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 241 ILNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIK 320
Cdd:CHL00056  241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVV 400
Cdd:CHL00056  321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 401 GAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
Cdd:CHL00056  401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 481 AQWIQNTHAFAPGLTAPNATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056  481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGNFAQSATT 640
Cdd:CHL00056  561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
Cdd:CHL00056  641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720

                         730       740       750
                  ....*....|....*....|....*....|
gi 1732113622 721 QGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:CHL00056  721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1649.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPEVKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQLAI 80
Cdd:CHL00056    1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  81 ILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLYCTA 160
Cdd:CHL00056   81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 161 IGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHEY 240
Cdd:CHL00056  161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 241 ILNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIK 320
Cdd:CHL00056  241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVV 400
Cdd:CHL00056  321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 401 GAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
Cdd:CHL00056  401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 481 AQWIQNTHAFAPGLTAPNATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056  481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGNFAQSATT 640
Cdd:CHL00056  561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
Cdd:CHL00056  641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720

                         730       740       750
                  ....*....|....*....|....*....|
gi 1732113622 721 QGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:CHL00056  721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-750 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 1476.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPE---VKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQ 77
Cdd:TIGR01335   1 MTISPPEREqktAKILVDRDPVPTSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDSHTSDLEDISRKIFSAHFGQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  78 LAIILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLY 157
Cdd:TIGR01335  81 LSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 158 CTAIGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLP 237
Cdd:TIGR01335 161 VTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLP 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 238 HEYILNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGH 317
Cdd:TIGR01335 241 HEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 318 SIKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGF 397
Cdd:TIGR01335 321 SIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 398 LVVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQ 477
Cdd:TIGR01335 401 LIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQ 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 478 PIFAQWIQNTHAFAPGLTAPNATASTSLTWgGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARS 557
Cdd:TIGR01335 481 PVFAQWIQNLHTLAPGNTAPNALATTSYAF-GGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARN 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 558 SRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGNFAQS 637
Cdd:TIGR01335 560 SRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVSQNGLVSHITGGNFAQS 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 638 ATTINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 717
Cdd:TIGR01335 640 AITINGWLRDFLWAQASQVIQSYGSSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 719

                         730       740       750
                  ....*....|....*....|....*....|...
gi 1732113622 718 SIVQGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:TIGR01335 720 SIIQGRAVGVAHYLLGGIATTWAFFLARIISVG 752
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-750 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 1404.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPE--VKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQL 78
Cdd:COG5701     1 MTISPPEREekVRVPVDNDPVPTSFEKWGKPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEEISRKIFSAHFGHL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  79 AIILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLYC 158
Cdd:COG5701    81 AVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 159 TAIGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPH 238
Cdd:COG5701   161 TAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPH 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 239 EYiLNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHS 318
Cdd:COG5701   241 EF-LNPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHS 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 319 IKEILEAHKGP---FTG-EGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWI 394
Cdd:COG5701   320 MKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWI 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 395 GGFLVVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAI 474
Cdd:COG5701   400 GGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAI 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 475 QLQPIFAQWIQNTHAFAPG-LTAPNATASTSLTWgGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVL 553
Cdd:COG5701   480 QLQPVFAQWIQNLHASAPGtATAPNAGGTVSEAF-GGDVVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVL 558

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 554 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGN 633
Cdd:COG5701   559 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVNADGSVNHITGGN 638

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 634 FAQSATTINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 713
Cdd:COG5701   639 FAQSSITINGWLRDFLWAQSSQVINSYGSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 718

                         730       740       750
                  ....*....|....*....|....*....|....*..
gi 1732113622 714 PRALSIVQGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:COG5701   719 PRALSITQGRAVGVAHYLLGGIATTWAFFLARLIALG 755
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
32-744 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1293.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  32 FSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLNDPTHIKPS 111
Cdd:pfam00223   1 FSQDLAQGPKTTRWIWNLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 112 AQVVWPIVGQEILNG--DVGGGFQGIQITSGFFQLWRASGITNELQLYCTAIGALIFAGLMLFAGWFHYHKAAPKLAWFQ 189
Cdd:pfam00223  81 AHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 190 DVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHEYiLNRDLLAQLYPSFAKGLTPLFTSNWSEY 269
Cdd:pfam00223 161 NAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPF-LNPDLMGQLYPSFAAGLGPFFTGNWGAY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 270 ADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIKEILEAHKGP--FTGEGHKGLYEILTTSWH 347
Cdd:pfam00223 240 ADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 348 AQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVVGAAAHAAIFMVRDYDPTTQYNNLLDRV 427
Cdd:pfam00223 320 AQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRV 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 428 LRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQ----------NTHAFAPGLTAP 497
Cdd:pfam00223 400 LEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAP 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 498 NATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 577
Cdd:pfam00223 480 NAGAGVSDVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCDGPG 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 578 RGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISdqgvvshVTGGNFAQSATTINGWLRDFLWAQASQVI 657
Cdd:pfam00223 560 RGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSDVWGGNV-------ITGGQFAQSSIYINGWLRDFLWAQSSQVI 632

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 658 QSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGVAHYLLGGIAT 737
Cdd:pfam00223 633 NSYGNSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLIQPRALSIVQGRAVGVAHFLLGGIVT 712


                  ....*..
gi 1732113622 738 TWAFFLA 744
Cdd:pfam00223 713 TWAFFIA 719
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1649.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPEVKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQLAI 80
Cdd:CHL00056    1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  81 ILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLYCTA 160
Cdd:CHL00056   81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 161 IGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHEY 240
Cdd:CHL00056  161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 241 ILNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIK 320
Cdd:CHL00056  241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVV 400
Cdd:CHL00056  321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 401 GAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
Cdd:CHL00056  401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 481 AQWIQNTHAFAPGLTAPNATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056  481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGNFAQSATT 640
Cdd:CHL00056  561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
Cdd:CHL00056  641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720

                         730       740       750
                  ....*....|....*....|....*....|
gi 1732113622 721 QGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:CHL00056  721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-750 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 1476.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPE---VKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQ 77
Cdd:TIGR01335   1 MTISPPEREqktAKILVDRDPVPTSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDSHTSDLEDISRKIFSAHFGQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  78 LAIILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLY 157
Cdd:TIGR01335  81 LSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 158 CTAIGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLP 237
Cdd:TIGR01335 161 VTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLP 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 238 HEYILNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGH 317
Cdd:TIGR01335 241 HEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 318 SIKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGF 397
Cdd:TIGR01335 321 SIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 398 LVVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQ 477
Cdd:TIGR01335 401 LIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQ 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 478 PIFAQWIQNTHAFAPGLTAPNATASTSLTWgGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARS 557
Cdd:TIGR01335 481 PVFAQWIQNLHTLAPGNTAPNALATTSYAF-GGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARN 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 558 SRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGNFAQS 637
Cdd:TIGR01335 560 SRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVSQNGLVSHITGGNFAQS 639

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 638 ATTINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 717
Cdd:TIGR01335 640 AITINGWLRDFLWAQASQVIQSYGSSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 719

                         730       740       750
                  ....*....|....*....|....*....|...
gi 1732113622 718 SIVQGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:TIGR01335 720 SIIQGRAVGVAHYLLGGIATTWAFFLARIISVG 752
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-750 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 1404.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622   1 MTIRSTEPE--VKIVVERDPIKTSFEKWAQPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQL 78
Cdd:COG5701     1 MTISPPEREekVRVPVDNDPVPTSFEKWGKPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEEISRKIFSAHFGHL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  79 AIILIWLSGMYFHGARFSNYEAWLNDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITNELQLYC 158
Cdd:COG5701    81 AVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 159 TAIGALIFAGLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPH 238
Cdd:COG5701   161 TAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPH 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 239 EYiLNRDLLAQLYPSFAKGLTPLFTSNWSEYADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHS 318
Cdd:COG5701   241 EF-LNPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHS 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 319 IKEILEAHKGP---FTG-EGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWI 394
Cdd:COG5701   320 MKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWI 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 395 GGFLVVGAAAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAI 474
Cdd:COG5701   400 GGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAI 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 475 QLQPIFAQWIQNTHAFAPG-LTAPNATASTSLTWgGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVL 553
Cdd:COG5701   480 QLQPVFAQWIQNLHASAPGtATAPNAGGTVSEAF-GGDVVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVL 558

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 554 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVSHVTGGN 633
Cdd:COG5701   559 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVNADGSVNHITGGN 638

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 634 FAQSATTINGWLRDFLWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 713
Cdd:COG5701   639 FAQSSITINGWLRDFLWAQSSQVINSYGSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 718

                         730       740       750
                  ....*....|....*....|....*....|....*..
gi 1732113622 714 PRALSIVQGRAVGVAHYLLGGIATTWAFFLARIISVG 750
Cdd:COG5701   719 PRALSITQGRAVGVAHYLLGGIATTWAFFLARLIALG 755
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
32-744 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1293.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  32 FSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEDISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLNDPTHIKPS 111
Cdd:pfam00223   1 FSQDLAQGPKTTRWIWNLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 112 AQVVWPIVGQEILNG--DVGGGFQGIQITSGFFQLWRASGITNELQLYCTAIGALIFAGLMLFAGWFHYHKAAPKLAWFQ 189
Cdd:pfam00223  81 AHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 190 DVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHEYiLNRDLLAQLYPSFAKGLTPLFTSNWSEY 269
Cdd:pfam00223 161 NAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPF-LNPDLMGQLYPSFAAGLGPFFTGNWGAY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 270 ADFLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIKEILEAHKGP--FTGEGHKGLYEILTTSWH 347
Cdd:pfam00223 240 ADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 348 AQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVVGAAAHAAIFMVRDYDPTTQYNNLLDRV 427
Cdd:pfam00223 320 AQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRV 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 428 LRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQ----------NTHAFAPGLTAP 497
Cdd:pfam00223 400 LEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAP 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 498 NATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 577
Cdd:pfam00223 480 NAGAGVSDVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCDGPG 559

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 578 RGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISdqgvvshVTGGNFAQSATTINGWLRDFLWAQASQVI 657
Cdd:pfam00223 560 RGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSDVWGGNV-------ITGGQFAQSSIYINGWLRDFLWAQSSQVI 632

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 658 QSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGVAHYLLGGIAT 737
Cdd:pfam00223 633 NSYGNSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLIQPRALSIVQGRAVGVAHFLLGGIVT 712


                  ....*..
gi 1732113622 738 TWAFFLA 744
Cdd:pfam00223 713 TWAFFIA 719
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
 32-744 0e+00

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 689.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  32 FSRTLAKGPnTTTWIWNLHADAHDFDSHTNDLED-ISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLNDPTHIKP 110
Cdd:CHL00054    8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 111 SAQVVW-PIVGQEILNGDVGGGFQG-IQI-TSGFFQLWRASGITNELQLYCTAIGALIFAGLMLFAGWFHYH-KAAPKLA 186
Cdd:CHL00054   87 IAHAIWdPHFGQPAVEAFTRGGALGpVNIaYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQpKWKPSVS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 187 WFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHeyilnrdllaqlypsfAKGLTPLFTSNW 266
Cdd:CHL00054  167 WFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPH----------------PQGLGPLFTGQW 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 267 SEYAD------------------FLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIKEILEAHKG 328
Cdd:CHL00054  231 NLYAQnpdssshlfgtsqgagtaILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIP 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 329 P--FTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVVGAAAHA 406
Cdd:CHL00054  311 PggRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHG 390

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 407 AIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMfsdtaIQLQPIFAQWIQN 486
Cdd:CHL00054  391 AIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQS 465

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 487 THAFA-------PGLTAPNATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSR 559
Cdd:CHL00054  466 AHGKTsygfdvlLSSTNSPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSK 545

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 560 LIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSdVWgsisdQGVVSHvtggnFAQSAT 639
Cdd:CHL00054  546 LMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT-LW-----QGNVSQ-----FNESST 614

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 640 TINGWLRDFLWAQASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ-- 713
Cdd:CHL00054  615 YLMGWLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRwr 694

                         730       740       750
                  ....*....|....*....|....*....|...
gi 1732113622 714 --PRALSIVQGRAVGVAHYLLGGIATTWAFFLA 744
Cdd:CHL00054  695 dkPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 727
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
 32-744 0e+00

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 658.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622  32 FSRTLAKGPnTTTWIWNLHADAHDFDSHTNDLED-ISRKVFSAHFGQLAIILIWLSGMYFHGARFSNYEAWLNDPTHIKP 110
Cdd:COG5702     8 FSQDLAQDP-TTRRIWYGIATAHDFESHDGMTEEnLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQDPLNVRP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 111 SAQVVW-PIVGQEILNGDVGGGFQG-IQIT-SGFFQLWRASGITNELQLYCTAIGALIFAGLMLFAGWFHYH-KAAPKLA 186
Cdd:COG5702    87 IAHAIWdPHFGKPAIEAFTQAGASNpVNICySGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQpKFRPSLA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 187 WFQDVESMLNHHLAGLLGLGSISWAGHQVHVSLPINQLLDAGVDPKEIPLPHeyilnrdllaqlypsfAKGLTPLFTSNW 266
Cdd:COG5702   167 WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPH----------------PAGLAPFFTGNW 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 267 SEYAD------------------FLTFRGGLNPVTGGLWLTDTAHHHLAIGVLFLVAGHMYRTNWGIGHSIKEILEAHKG 328
Cdd:COG5702   231 GVYAQnpdtaghafgtsqgagtaILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQG 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 329 P------FTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLVVGA 402
Cdd:COG5702   311 PgrsgffKTGLGHKGLYDTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGA 390

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 403 AAHAAIFMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMfsdtaIQLQPIFAQ 482
Cdd:COG5702   391 FAHGAIFFVRDYDPEANKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQ-----ILIEPVFAQ 465

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 483 WIQNTHAFA----------PGLTAPNATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGV 552
Cdd:COG5702   466 FIQAAHGKVlygidtllsnPDSVASTAWPNYGNVWLPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGA 545

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 553 LFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSdVWGSISDQgvvshvtgg 632
Cdd:COG5702   546 LDARGSKLMPDKKDFGYAFPCDGPGRGGTCDISAWDSFYLATFWMLNTIGWVTFYWHWKHLS-IWSGNVAQ--------- 615

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732113622 633 nFAQSATTINGWLRDFLWAQASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKV 708
Cdd:COG5702   616 -FNESSTYLMGWFRDYLWANSAQLINGYSpfgtNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPL 694

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|
gi 1732113622 709 APAIQPR----ALSIVQGRAVGVAHYLLGGIATTWAFFLA 744
Cdd:COG5702   695 ANLVRWKdkpvALSIVQARLVGLTHFTVGYIVTYAAFLIA 734
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH