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Conserved domains on  [gi|1730203845|gb|TYC87054|]
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thioesterase family protein [Novosphingobium sp. BW1]

Protein Classification

thioesterase family protein( domain architecture ID 12150045)

thioesterase family protein similar to Talaromyces wortmannii thioesterase-like protein TwmA, part of the gene cluster that mediates the biosynthesis of wortmanamides A and B, reduced long-chain polyketides amidated with a specific omega-amino acid, 5-aminopentanoic acid (5PA)

CATH:  3.10.129.90

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
4HBT_3 pfam13622
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
16-252 9.43e-30

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


:

Pssm-ID: 463937 [Multi-domain]  Cd Length: 246  Bit Score: 111.65  E-value: 9.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  16 ITPDWQQGRTAYGGLTSALAVEAARRVLPEPlPLRSAQFSMIAPL-VGRIEARAKVVRAGRNAVWVTAELVGEKGTGFLA 94
Cdd:pfam13622   1 TPPPWSPGRAPHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVpPGPVTIRVEVVRDGRSFSTRRVELSQDGRVVVTA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  95 TCVFMHPRESVLALGGYALPDgLMPLEEAPVFKTKVLPAFMQM------HFDVRVAV---PADRLQEADLCWWVRVRERE 165
Cdd:pfam13622  80 TATFGRLRSSEWELTPAAPPP-LPPPEDCPLAADEAPFPLFRRvpgfldPFEPRFARgggPFSPGGPGRVRLWVRLRDGG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845 166 GLDADVEAVLLGDALPPAVLPYLPPRTPV---SSMQWHVNMLnaAARPRDGWWLIRSTSRQSGHGLASEDILQWGEGGTP 242
Cdd:pfam13622 159 EPDPLAALAYLADAFPPRVLSLRLDPPASgwfPTLDLTVYFH--RRPPPGEWLLLRAETPVAGDGRGDVEARLWDEDGRL 236
                         250
                  ....*....|
gi 1730203845 243 AVAGMQSVAV 252
Cdd:pfam13622 237 VATSRQEVLV 246
 
Name Accession Description Interval E-value
4HBT_3 pfam13622
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
16-252 9.43e-30

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


Pssm-ID: 463937 [Multi-domain]  Cd Length: 246  Bit Score: 111.65  E-value: 9.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  16 ITPDWQQGRTAYGGLTSALAVEAARRVLPEPlPLRSAQFSMIAPL-VGRIEARAKVVRAGRNAVWVTAELVGEKGTGFLA 94
Cdd:pfam13622   1 TPPPWSPGRAPHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVpPGPVTIRVEVVRDGRSFSTRRVELSQDGRVVVTA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  95 TCVFMHPRESVLALGGYALPDgLMPLEEAPVFKTKVLPAFMQM------HFDVRVAV---PADRLQEADLCWWVRVRERE 165
Cdd:pfam13622  80 TATFGRLRSSEWELTPAAPPP-LPPPEDCPLAADEAPFPLFRRvpgfldPFEPRFARgggPFSPGGPGRVRLWVRLRDGG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845 166 GLDADVEAVLLGDALPPAVLPYLPPRTPV---SSMQWHVNMLnaAARPRDGWWLIRSTSRQSGHGLASEDILQWGEGGTP 242
Cdd:pfam13622 159 EPDPLAALAYLADAFPPRVLSLRLDPPASgwfPTLDLTVYFH--RRPPPGEWLLLRAETPVAGDGRGDVEARLWDEDGRL 236
                         250
                  ....*....|
gi 1730203845 243 AVAGMQSVAV 252
Cdd:pfam13622 237 VATSRQEVLV 246
TesB COG1946
Acyl-CoA thioesterase [Lipid transport and metabolism];
6-254 6.58e-29

Acyl-CoA thioesterase [Lipid transport and metabolism];


Pssm-ID: 441549 [Multi-domain]  Cd Length: 273  Bit Score: 109.97  E-value: 6.58e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845   6 EALEDGFALAITPDWQQGRTAYGGLTSALAVEAARRVLPEPLPLRSAQFSMIAPLV--GRIEARAKVVRAGRNAVWVTAE 83
Cdd:COG1946    12 ERLEDGLFRGEISPDQGLRRVFGGQVAAQALRAARRTVPEDRPPHSLHAYFLRPGDpdGPIEYEVERLRDGRSFSTRRVT 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  84 LVGEKGTGFLATCVFMHPRESV---LALGGYALPDGLMPLEEAPVFKTKVLPAFMQM-HFDVRVAVPADRL----QEADL 155
Cdd:COG1946    92 AIQGGRVIFTATASFGVPEEGLehqAPMPDVPPPEDLPSLPELLIAGVLPLRFFAFLrPFDIRPVEGPLPFappsGEPRQ 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845 156 CWWVRVREREGLDADVEAVL--LGDALPPAV--LPYLPPRTPVSSMQWHVNMLNAAarPRDGWWLIRSTSRQSGHGLASE 231
Cdd:COG1946   172 RVWMRARDPLPDDPLHAALLayASDATPPATalLSWLGPPLPAASLDHAMWFHRPF--RADDWLLYDADSPSASGGRGLE 249
                         250       260
                  ....*....|....*....|...
gi 1730203845 232 DILQWGEGGTPAVAGMQSVAVFA 254
Cdd:COG1946   250 RGRIWDRDGRLVASSRQEGLVRG 272
Thioesterase_II_repeat2 cd03445
Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases ...
21-76 1.48e-05

Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.


Pssm-ID: 239529 [Multi-domain]  Cd Length: 94  Bit Score: 42.61  E-value: 1.48e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1730203845  21 QQGRTAYGGLTSALAVEAARRVLPEPLPLRSAQFS-MIAPLVGR-IEARAKVVRAGRN 76
Cdd:cd03445    13 GQGRGVFGGQVLAQALVAAARTVPDDRVPHSLHSYfLRPGDPDQpIEYEVERLRDGRS 70
 
Name Accession Description Interval E-value
4HBT_3 pfam13622
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
16-252 9.43e-30

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


Pssm-ID: 463937 [Multi-domain]  Cd Length: 246  Bit Score: 111.65  E-value: 9.43e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  16 ITPDWQQGRTAYGGLTSALAVEAARRVLPEPlPLRSAQFSMIAPL-VGRIEARAKVVRAGRNAVWVTAELVGEKGTGFLA 94
Cdd:pfam13622   1 TPPPWSPGRAPHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVpPGPVTIRVEVVRDGRSFSTRRVELSQDGRVVVTA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  95 TCVFMHPRESVLALGGYALPDgLMPLEEAPVFKTKVLPAFMQM------HFDVRVAV---PADRLQEADLCWWVRVRERE 165
Cdd:pfam13622  80 TATFGRLRSSEWELTPAAPPP-LPPPEDCPLAADEAPFPLFRRvpgfldPFEPRFARgggPFSPGGPGRVRLWVRLRDGG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845 166 GLDADVEAVLLGDALPPAVLPYLPPRTPV---SSMQWHVNMLnaAARPRDGWWLIRSTSRQSGHGLASEDILQWGEGGTP 242
Cdd:pfam13622 159 EPDPLAALAYLADAFPPRVLSLRLDPPASgwfPTLDLTVYFH--RRPPPGEWLLLRAETPVAGDGRGDVEARLWDEDGRL 236
                         250
                  ....*....|
gi 1730203845 243 AVAGMQSVAV 252
Cdd:pfam13622 237 VATSRQEVLV 246
TesB COG1946
Acyl-CoA thioesterase [Lipid transport and metabolism];
6-254 6.58e-29

Acyl-CoA thioesterase [Lipid transport and metabolism];


Pssm-ID: 441549 [Multi-domain]  Cd Length: 273  Bit Score: 109.97  E-value: 6.58e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845   6 EALEDGFALAITPDWQQGRTAYGGLTSALAVEAARRVLPEPLPLRSAQFSMIAPLV--GRIEARAKVVRAGRNAVWVTAE 83
Cdd:COG1946    12 ERLEDGLFRGEISPDQGLRRVFGGQVAAQALRAARRTVPEDRPPHSLHAYFLRPGDpdGPIEYEVERLRDGRSFSTRRVT 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845  84 LVGEKGTGFLATCVFMHPRESV---LALGGYALPDGLMPLEEAPVFKTKVLPAFMQM-HFDVRVAVPADRL----QEADL 155
Cdd:COG1946    92 AIQGGRVIFTATASFGVPEEGLehqAPMPDVPPPEDLPSLPELLIAGVLPLRFFAFLrPFDIRPVEGPLPFappsGEPRQ 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845 156 CWWVRVREREGLDADVEAVL--LGDALPPAV--LPYLPPRTPVSSMQWHVNMLNAAarPRDGWWLIRSTSRQSGHGLASE 231
Cdd:COG1946   172 RVWMRARDPLPDDPLHAALLayASDATPPATalLSWLGPPLPAASLDHAMWFHRPF--RADDWLLYDADSPSASGGRGLE 249
                         250       260
                  ....*....|....*....|...
gi 1730203845 232 DILQWGEGGTPAVAGMQSVAVFA 254
Cdd:COG1946   250 RGRIWDRDGRLVASSRQEGLVRG 272
Thioesterase_II_repeat2 cd03445
Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases ...
21-76 1.48e-05

Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.


Pssm-ID: 239529 [Multi-domain]  Cd Length: 94  Bit Score: 42.61  E-value: 1.48e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1730203845  21 QQGRTAYGGLTSALAVEAARRVLPEPLPLRSAQFS-MIAPLVGR-IEARAKVVRAGRN 76
Cdd:cd03445    13 GQGRGVFGGQVLAQALVAAARTVPDDRVPHSLHSYfLRPGDPDQpIEYEVERLRDGRS 70
PaaI_thioesterase cd03443
PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several ...
6-90 2.90e-04

PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).


Pssm-ID: 239527 [Multi-domain]  Cd Length: 113  Bit Score: 39.46  E-value: 2.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845   6 EALEDG---FALAITPDWQQGR-TAYGGLTSALAVE----AARRVLPEPLPLRSAQFSM--IAP-LVGRIEARAKVVRAG 74
Cdd:cd03443     7 VEVGPGrvvLRLPVRPRHLNPGgIVHGGAIATLADTagglAALSALPPGALAVTVDLNVnyLRPaRGGDLTARARVVKLG 86
                          90
                  ....*....|....*.
gi 1730203845  75 RNAVWVTAELVGEKGT 90
Cdd:cd03443    87 RRLAVVEVEVTDEDGK 102
PaaI COG2050
Acyl-CoA thioesterase PaaI, contains HGG motif [Secondary metabolites biosynthesis, transport ...
6-90 6.99e-04

Acyl-CoA thioesterase PaaI, contains HGG motif [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441653 [Multi-domain]  Cd Length: 138  Bit Score: 38.77  E-value: 6.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730203845   6 EALEDGFA---LAITPDWQQG-RTAYGGLTSALA----VEAARRVLPEPLPLRSAQFSM----IAPLVGRIEARAKVVRA 73
Cdd:COG2050    26 VEVEPGRAvlrLPVRPEHLNPpGTVHGGALAALAdsaaGLAANSALPPGRRAVTIELNInflrPARLGDRLTAEARVVRR 105
                          90
                  ....*....|....*..
gi 1730203845  74 GRNAVWVTAELVGEKGT 90
Cdd:COG2050   106 GRRLAVVEVEVTDEDGK 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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