|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1-614 |
0e+00 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 1201.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECES 80
Cdd:PRK14971 1 MENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 81 CVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTE 160
Cdd:PRK14971 81 CVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 161 KHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
Cdd:PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 241 ENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVGAGIRQRYQEQA 320
Cdd:PRK14971 241 ENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 321 QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVAQLTVEGDDGSGGRGPKQAIKPIFTQPAAAQQPQVAPIASP 400
Cdd:PRK14971 321 QKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 401 SQSMN--AATPVAPQAVSQQAGSSPAVNVRPGGA--VSPSGAMPDAVRMAQFKEEKKIPVMKKSSLGLSIKHPQKEEEQR 476
Cdd:PRK14971 401 SPSQSsaAAQPSAPQSATQPAGTPPTVSVDPPAAvpVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 477 GAGVVHTAHMSTQQieedFIFNERDLNYYWQEYAGRMPIEQKAIAMRMQNMRLSLLNDTTFEVVVDNEIIAKDFTALIPG 556
Cdd:PRK14971 481 ATGNIKEAPTGTQK----EIFTEEDLQYYWQEFAGTRPQEEKALKETMINCRPKLLNGTTFEVAVDNELQEKELTNLIPD 556
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720219870 557 IQAYLRGSLKNRKVTMTVRVSEATENVRAVSRVEKFQMMAQKNNALLQLKEEFGLELY 614
Cdd:PRK14971 557 LLGFLRGRLKNSKITMTVRVSEPTEVNRAYSSVEKFQYLAQKNPALLELREELGLELD 614
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
1-366 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 553.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADgeacneces 80
Cdd:PRK14970 1 MENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDP--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 81 cvafNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTE 160
Cdd:PRK14970 72 ----NEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 161 KHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
Cdd:PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVT 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 241 ENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVGAGIRQRYQEQA 320
Cdd:PRK14970 228 ENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQS 307
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1720219870 321 QKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVAQLTVEG 366
Cdd:PRK14970 308 QKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASINFDG 353
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
4-360 |
0e+00 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 547.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECESCVA 83
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQN-GPDGEPCNECESCKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 84 FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHK 163
Cdd:TIGR02397 80 INSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 164 ILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENL 243
Cdd:TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 244 NVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAAtLQLLEVGAGIRQRYQEQAQKC 323
Cdd:TIGR02397 240 GLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTP-SNLLAVLESEQEFLKELALKL 318
|
330 340 350
....*....|....*....|....*....|....*..
gi 1720219870 324 ALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
Cdd:TIGR02397 319 SLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
9-417 |
3.31e-176 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 511.34 E-value: 3.31e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTaDGEACNECESCVAFNEQR 88
Cdd:PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-DGEPCNECEICKAITNGS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 89 SYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTI 168
Cdd:PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 169 LSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDY 248
Cdd:PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQ 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 249 EYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVGAGIRQRYQEQAQKCALPFL 328
Cdd:PRK05563 247 EALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEKLDIERL 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 329 YRAMKLCNDCDMNYRASKNKRLLVELTLIQVAQLTVEGDDGSGGRGP--------KQAIKPIFTQPAAAQQPQVAPIASP 400
Cdd:PRK05563 327 YRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDTELEVllqrveqlEQELKQLKAQPVGVAPEQKEKKKEK 406
|
410
....*....|....*..
gi 1720219870 401 SQSMNAATPVAPQAVSQ 417
Cdd:PRK05563 407 KKNKKKKYKVPRGKIYK 423
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
13-361 |
6.03e-160 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 461.58 E-value: 6.03e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 13 PSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTaDGEACNECESCVAFNEQRSYNI 92
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGP-TGEPCGECESCRAIAAGSHPDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 93 HELDA-ASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSR 171
Cdd:COG2812 85 IEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 172 CQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFtggnityksvienlNVLDY-EY 250
Cdd:COG2812 165 CQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAF--------------GLLDRrEL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 251 YFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLeVGAGIRQRYQEQAQKCALPFLYR 330
Cdd:COG2812 231 LLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELL-VNEDERERLQELARRLSPERLLR 309
|
330 340 350
....*....|....*....|....*....|.
gi 1720219870 331 AMKLCNDCDMNYRASKNKRLLVELTLIQVAQ 361
Cdd:COG2812 310 AIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
9-453 |
5.38e-131 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 396.49 E-value: 5.38e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECESCVAFNEQR 88
Cdd:PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 89 SYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTI 168
Cdd:PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 169 LSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDY 248
Cdd:PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGD 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 249 EYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVGAGIRQRYQEQAQKCALPFL 328
Cdd:PRK14950 248 EEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQIANLEAL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 329 YRAMKLCNDCDMNYRASKNKRLLVELTLIQV----AQLTVEGDDGSGGRGPKQA-IKPI--FTQPAAAQQPQVAPIASP- 400
Cdd:PRK14950 328 TKWVKAFSQLDFQLRTTSYGQLPLELAVIEAllvpVPAPQPAKPTAAAPSPVRPtPAPStrPKAAAAANIPPKEPVRETa 407
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1720219870 401 SQSMNAATPVAPQAVSQQAGSSPAVnvrpgGAVSPSGAMPDAVRMAQFKEEKK 453
Cdd:PRK14950 408 TPPPVPPRPVAPPVPHTPESAPKLT-----RAAIPVDEKPKYTPPAPPKEEEK 455
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
3-438 |
1.80e-119 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 367.73 E-value: 1.80e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADG-------EAC 75
Cdd:PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPvylqevtEPC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 76 NECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFI 155
Cdd:PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 156 LATTEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGN-- 233
Cdd:PRK14954 162 FATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSea 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 234 ---ITYKSVIENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVGA 310
Cdd:PRK14954 242 ekvIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPE 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 311 GIRQRYQEQAQKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVAQLtvegDDGSGGRGPKQA----IKPIFTQP 386
Cdd:PRK14954 322 SVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL----VRNDGGVAPSPAgspdVKKKAPEP 397
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720219870 387 AAAQQPQVAPIASPS----QSMNAATPVAPQAVSQQAGSSPAVNVRPGGAVSPSGA 438
Cdd:PRK14954 398 DLPQPDRHPGPAKPEapgaRPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRN 453
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
3-453 |
8.64e-117 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 359.44 E-value: 8.64e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC-MNLTAdgEACNECESC 81
Cdd:PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCeQGLTA--EPCNVCPPC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 82 VAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEK 161
Cdd:PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 162 HKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIE 241
Cdd:PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 242 NLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK---DAATlqLLEVGAGIRQRYQE 318
Cdd:PRK14965 240 LLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRavgEPGD--LLDLSEAELAELRA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 319 QAQKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTL---------IQVAQLTVEGDD---GSGGRGPKQAIKPIFTQP 386
Cdd:PRK14965 318 QAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALlkmatlapgAPVSELLDRLEAlerGAPAPPSAAWGAPTPAAP 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720219870 387 AAAQQPQVAPIASPSQSMNAATPVAPQAVSQQAGSSPAVNVRPGGAVSPSGAMPDAVrmaQFKEEKK 453
Cdd:PRK14965 398 AAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRAFV---AFVKGKK 461
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
3-385 |
1.28e-114 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 347.65 E-value: 1.28e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADG-------EAC 75
Cdd:PRK14955 2 SYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDAdylqevtEPC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 76 NECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFI 155
Cdd:PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 156 LATTEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT----- 230
Cdd:PRK14955 162 FATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSveseg 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 231 GGNITYKSVIENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLEVGA 310
Cdd:PRK14955 242 EGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPD 321
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720219870 311 GIRQRYQEQAQKCAlPFLYRAMK---LCNDCDMNYRASKNKRL-LVELTLIQVAQLTVEGDDGSGGRGPKQaiKPIFTQ 385
Cdd:PRK14955 322 AVRERYERDAAKFS-PEVIMQMTdllLQTQKELKFQFEYQFRFeLALLKLIEIGHPAPTAAAAPTGGAQKK--KPLLSL 397
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
1-308 |
4.52e-114 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 348.30 E-value: 4.52e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECES 80
Cdd:PRK06305 1 MTSYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 81 CVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTE 160
Cdd:PRK06305 81 CKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 161 KHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
Cdd:PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720219870 241 ENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATL----------QLLEV 308
Cdd:PRK06305 241 KALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLssvatkysseQLLEI 318
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
3-298 |
9.91e-112 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 343.34 E-value: 9.91e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTaDGEACNECESCV 82
Cdd:PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQ-EGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720219870 243 LNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK 298
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNK 296
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
10-429 |
1.32e-110 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 345.02 E-value: 1.32e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNltADG---EACNECESCVAFNE 86
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN--SDKptpEPCGKCELCRAIAA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 87 QRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILP 166
Cdd:PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 167 TILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQvVSFTGGNITYKSVIENLNVL 246
Cdd:PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVWDLLGAV 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 247 DYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAAT-LQLLEVGAGIRQRYQEQAQKCAL 325
Cdd:PRK14948 246 PEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNrPDLVAVSQQTWDELCKLAKQINL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 326 PFLYRAMKLCNDCDMNYRASKNKRLLVELTLI-----QVAQLTVEGDDGSGGRGPKQAIKPIFTQPAAAQQPQVAPIASP 400
Cdd:PRK14948 326 ERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLgllpsAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPS 405
|
410 420
....*....|....*....|....*....
gi 1720219870 401 SQSMNAATPVAPQAVSQQAGSSPAVNVRP 429
Cdd:PRK14948 406 PPPAKASPPIPVPAEPTEPSPTPPANAAN 434
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
3-307 |
1.80e-110 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 347.58 E-value: 1.80e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECEScv 82
Cdd:PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 afNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK07133 82 --NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
Cdd:PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEEL 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720219870 243 LNVLDYE--YYFrLTDCFLENkVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLE 307
Cdd:PRK07133 240 FGLVSNEnlINL-LNLLYSKD-IKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLE 304
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
4-447 |
9.36e-108 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 336.87 E-value: 9.36e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCmnLTADGEA------CNE 77
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY--EGPDGDGgptidlCGV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILA 157
Cdd:PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 158 TTEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYK 237
Cdd:PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 238 SVIENLNVLDYEYYFRLTDCFLENKVSDALLLFND----------VLNKGFDGSHFITGLSshfrdlLVSKDAATLQLLE 307
Cdd:PRK09111 249 AVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAqydagadpvvVLTDLAEFTHLVTRLK------IVPDAAEDPSLSE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 308 VGagiRQRYQEQAQKCALPFLYRA----MKLCNDCdmnyRASKNKRLLVELTLIQVA-------------QLTVEGDDGS 370
Cdd:PRK09111 323 AE---RTRGAEFAKKLSMRVLSRLwqmlLKGIEEV----QGAPRPLAAAEMVLIRLAyaadlptpdealrRLQEGPPSPG 395
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720219870 371 GGRGPKQAIKPIFTQPAAAQQPQVAPIASPSQSMNAATPVAPQAVSQQAGSSPAVNVRPGGAVSPSgaMPDAVRMAQ 447
Cdd:PRK09111 396 GGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRLNS--FEDIVALAE 470
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
4-362 |
2.96e-100 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 316.33 E-value: 2.96e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNltadGEA---CNECES 80
Cdd:PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN----GPTpmpCGECSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 81 CVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTE 160
Cdd:PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 161 KHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
Cdd:PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 241 ENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLevgAGIR-QRYQEQ 319
Cdd:PRK06647 239 SKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAF---IGIKaERLPEK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1720219870 320 AQKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVAQL 362
Cdd:PRK06647 316 LREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRL 358
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
3-308 |
6.91e-97 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 308.70 E-value: 6.91e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTaDGEACNECESCV 82
Cdd:PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPK-DGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720219870 243 LNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLV---SKDAATLQLLEV 308
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVyqkTKNINLLKKLSK 309
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
9-442 |
2.17e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 296.37 E-value: 2.17e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNltADGEACNECESCVAFNEQR 88
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG--EDPKPCGECESCLAVRRGA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 89 SYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTI 168
Cdd:PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 169 LSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSfTGGNITYKSVIENLNVLDY 248
Cdd:PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEALGLPPQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 249 EYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSkdaatlqllEVGAGIRQRYqEQAQkcalPFL 328
Cdd:PRK14963 243 ERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYA---------ELGLGGGPRL-EGAE----PRL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 329 YRAMKLCNDcDMNYRASKNKRLLVELTLIQVAQ-LTVEGDDGSGGRGPKQAIKPIFTQPAAAQQPQVAPIASPSQSMNAA 407
Cdd:PRK14963 309 LAAMTALDE-QMERFARRSDALSLELALLHALLaLGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATA 387
|
410 420 430
....*....|....*....|....*....|....*....
gi 1720219870 408 TPVAPQAVSQQAGSSPA----VNVRPGGAVSPSGAMPDA 442
Cdd:PRK14963 388 AGAPLPDFDPRPRGPPApepaRSAEAPPLVAPAAAPAGL 426
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
9-284 |
2.75e-92 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 292.44 E-value: 2.75e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECESCVAFNEQR 88
Cdd:PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCEN-RKGVEPCNECRACRSIDEGT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 89 SYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTI 168
Cdd:PRK14962 85 FMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 169 LSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLDY 248
Cdd:PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPI 244
|
250 260 270
....*....|....*....|....*....|....*.
gi 1720219870 249 EYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFI 284
Cdd:PRK14962 245 EVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLI 280
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
4-261 |
1.08e-91 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 292.81 E-value: 1.08e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQ----RALTttlkNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC-MNLTAdgEACNEC 78
Cdd:PRK14969 3 YQVLARKWRPKSFSELVGQehvvRALT----NALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCeTGVTA--TPCGVC 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILAT 158
Cdd:PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 159 TEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKS 238
Cdd:PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESE 236
|
250 260
....*....|....*....|...
gi 1720219870 239 VIENLNVLDYEYYFRLTDCFLEN 261
Cdd:PRK14969 237 VRAMLGAIDQDYLFALLEALLAQ 259
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
4-446 |
1.01e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 292.77 E-value: 1.01e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNltADGEA------CNE 77
Cdd:PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQG--PDGQGgitatpCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILA 157
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 158 TTEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYK 237
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 238 SVIENLNVLDYEYYFRLTDCFLEN------KVSDALLLfndvlnkgfdgshfiTGLSShfrdllvskdAATLQllEVGAG 311
Cdd:PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGdgrtvvETADELRL---------------NGLSA----------ASTLE--EMAAV 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 312 IRQRYQEQAQKCALPflyrAMKLCNDCDMNYRAS----KNKRLLVELTLIQVAQLTVEGDD----------------GSG 371
Cdd:PRK14951 294 LQRMAVLQAVPQAAA----AATDPEAAEVARLAAlmpaDETQLLYSICLHGRAELGLAPDEyaaltmvllrllafkpAAA 369
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 372 GRGPKQAIKPIFTQPAAAqQPQVAPIASPSQsmnAATPVAPQAVSQQAGSSPAVNVRPGGAVSPSGAMPDAVRMA 446
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAA-APAAAPVAQAAA---APAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
4-442 |
3.75e-87 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 285.62 E-value: 3.75e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADG----EACNECE 79
Cdd:PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGgitaQPCGQCR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 80 SCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATT 159
Cdd:PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 160 EKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSV 239
Cdd:PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 240 IENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSShfrdlLVSK-------DAATLQLLEVGAGI 312
Cdd:PRK12323 243 RGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLAS-----LLQKialaqvvPAAVQDDWPEADDI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 313 RqRYQEQAQKCALPFLYRAMKLcndcdmnyraSKNKRLLVE-------LTLIQVaqLTVEGDDGSGGRGPKQAIKPIFTQ 385
Cdd:PRK12323 318 R-RLAGRFDAQEVQLFYQIANL----------GRSELALAPdeyagftMTLLRM--LAFRPGQSGGGAGPATAAAAPVAQ 384
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720219870 386 --PAAAQQPQVAPIASPSQSMNAATPVAPQAVSQQAGS----SPAV----------NVRPGGAVSPSGAMPDA 442
Cdd:PRK12323 385 paPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAparrSPAPealaaarqasARGPGGAPAPAPAPAAA 457
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-358 |
3.38e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 277.90 E-value: 3.38e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADG---EACNECE 79
Cdd:PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENttiKTCEQCT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 80 SCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATT 159
Cdd:PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 160 EKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTG--GNITYK 237
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAksDNIISP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 238 SVIEN-LNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK--DAATLQLLEvgaGIRQ 314
Cdd:PRK06645 247 QVINQmLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKmlPNYSLPIYE---SFND 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720219870 315 RYQEQAQKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQ 358
Cdd:PRK06645 324 RTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIK 367
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
6-247 |
3.62e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 278.46 E-value: 3.62e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMN-LTAdgEACNECESCVAF 84
Cdd:PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQgPSS--TPCDTCIQCQSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 85 NEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKI 164
Cdd:PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 165 LPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLN 244
Cdd:PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLG 240
|
...
gi 1720219870 245 VLD 247
Cdd:PRK08451 241 LLD 243
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
4-446 |
4.60e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 281.37 E-value: 4.60e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMN-LTADgeACNECESCV 82
Cdd:PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETgITAT--PCGECDNCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KiLP-TILSRC-QiydFN--RISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKS 238
Cdd:PRK07994 161 K-LPvTILSRClQ---FHlkALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 239 VIENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDgshfitglsshFRDLLVskDAATL-------QLL----- 306
Cdd:PRK07994 237 VSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPD-----------WEGLLV--ELLELlhriamaQLLpaald 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 307 EVGAGIRQRYQEQAQkcALP----FLYRAMKLCNDCDMNYraSKNKRLLVELTLI-------QVAQLTVEGDDGSGGRGP 375
Cdd:PRK07994 304 NDMADIELRLRELAR--TLPpedvQLYYQTLLIGRKDLPL--APDRRMGVEMTLLrmlafhpAAPLPEPEVPPQSAAPAA 379
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720219870 376 KQAIKPIFTQPAAAQQPQVAPIASPSQSMNAATPVAPQAVSQQAGSSPAVNVRPG--GAVSPSGAMPDAVRMA 446
Cdd:PRK07994 380 SAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGatKAKKSEPAAASRARPV 452
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
4-455 |
4.72e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 283.14 E-value: 4.72e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTAdGEACNECESCVA 83
Cdd:PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEPCGVCQSCTQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 84 FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHK 163
Cdd:PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 164 ILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENL 243
Cdd:PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 244 NVLDYEYYFRLTDCfLENKVSDALLLFNDVLNK---GFDGShfITGLSSHFRDL-LVSKDAATLQLLEVGAGIRQRYQ-- 317
Cdd:PRK08691 242 GAVDKQYLYELLTG-IINQDGAALLAKAQEMAAcavGFDNA--LGELAILLQQLaLIQAVPSALAHDDPDSDILHRLAqt 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 318 ---EQAQkcalpfLYRAMKLCNDCDM----NYRASKNKRLLVELTLIQVAQLTVEGDDGSGGRGPKQAIKPIFTQPAAAQ 390
Cdd:PRK08691 319 isgEQIQ------LYYQIAVHGKRDLslapDEYAGFMMTLLRMLAFAPLAAASCDANAVIENTELQSPSAQTAEKETAAK 392
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720219870 391 QPQ--------VAPIASPSQSMNAATPVAPQAVSQQAGSS-PAVNVRPGGAVSPSGAMPDAVRMAQFKEEKKIP 455
Cdd:PRK08691 393 KPQprpeaetaQTPVQTASAAAMPSEGKTAGPVSNQENNDvPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETP 466
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
8-275 |
9.04e-86 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 276.28 E-value: 9.04e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECESCVAFNEQ 87
Cdd:PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSN-GPTSDPCGTCHNCISIKNS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 88 RSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPT 167
Cdd:PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 168 ILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Cdd:PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVD 242
|
250 260
....*....|....*....|....*...
gi 1720219870 248 YEYYFRLTDCFLENKVSDALLLFNDVLN 275
Cdd:PRK14964 243 KHILEDLVEAILLGDAQSALNVFRELCN 270
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-442 |
1.73e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 274.25 E-value: 1.73e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 1 MENYIVSARkYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECES 80
Cdd:PRK14959 1 MSHASLTAR-YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCET-APTGEPCNTCEQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 81 CVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTE 160
Cdd:PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 161 KHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
Cdd:PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGAR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 241 ENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDA--ATLQLLEVGAGIRQRYQE 318
Cdd:PRK14959 239 GVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAgeAALASLDLPEDEARQWLG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 319 QAQKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVAQL----TVEG--DDGSGGRGPKQAIKPIFTQPAAAQQP 392
Cdd:PRK14959 319 WAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLprlmPVESlrPSGGGASAPSGSAAEGPASGGAATIP 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720219870 393 ---QVAP-IASPSQSMNAATpVAPQAVSQQAGSSPAV--------NVRPGGAVSPSGAMPDA 442
Cdd:PRK14959 399 tpgTQGPqGTAPAAGMTPSS-AAPATPAPSAAPSPRVpwddappaPPRSGIPPRPAPRMPEA 459
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-235 |
5.67e-82 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 266.04 E-value: 5.67e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 2 ENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECESC 81
Cdd:PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIGNEPCNECTSC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 82 VAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEK 161
Cdd:PRK14956 82 LEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720219870 162 HKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNIT 235
Cdd:PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLT 235
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
3-359 |
9.70e-82 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 261.28 E-value: 9.70e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMN-LTADgeACNECESC 81
Cdd:PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNgITSN--PCRKCIIC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 82 VAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEK 161
Cdd:PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 162 HKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIE 241
Cdd:PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 242 NLNVLDYEYYFRLTDCFLENKVSDALLLFNdvlnkgfdgshFITGLSSHFRDLLVSkdaaTLQLLEVGAGIR-------- 313
Cdd:PRK14961 240 MLGLLNEKQSFLLTDALLKKDSKKTMLLLN-----------KISSIGIEWENILIE----MLRFLHHISMSQsfpkiwnt 304
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1720219870 314 ---QRYQEQAQKCALPFLYRAMKLCNDCDMNYRA----SKNKRLLVELTLIQV 359
Cdd:PRK14961 305 ifiKNYKNQIQKIAQNNKKTNIQLCYQILLNGRKelkfAPDQKIGVEMTLLRA 357
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
9-440 |
4.01e-79 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 266.85 E-value: 4.01e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCmnltADG---EACNECESCVAF- 84
Cdd:PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC----VEGptsTPCGECDSCVALa 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 85 -NEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHK 163
Cdd:PRK07764 83 pGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 164 ILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALN-VIalKADGG-MRDALSIFDQVVSFTGGN-ITYKSVI 240
Cdd:PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPlVI--RAGGGsVRDSLSVLDQLLAGAGPEgVTYERAV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 241 ENLNVldyeyyfrlTDCFLENKVSDALL------LF---NDVLNKGFDGSHFITGLSSHFRDLLVSK---DAATLQLLEV 308
Cdd:PRK07764 241 ALLGV---------TDSALIDEAVDALAagdgaaLFgtvDRVIEAGHDPRRFAEDLLERLRDLIVLQavpDAAERGLVDA 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 309 GAGIRQRYQEQAQKCALPFLYRAMKLCND--CDMnyRASKNKRLLVELTLIQVAqLTVEGDDGSG--------GRGPKQA 378
Cdd:PRK07764 312 PADQLDRMRAQAQRLGPAELTRAADVVNDglTEM--RGATSPRLLLELLCARML-LPSASDDERGllarlerlERRLGVA 388
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720219870 379 IKPIFTQPAAAQQPQVAPIASPSQSmnAATPVAPQAVSQQAGSSPAVNVRPGGAVSPSGAMP 440
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPA--AAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNA 448
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
4-239 |
9.85e-78 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 265.44 E-value: 9.85e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC-MNLTAdgEACNECESCV 82
Cdd:PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCeQGVTA--TPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSV 239
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQV 237
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
3-267 |
4.86e-75 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 249.61 E-value: 4.86e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 3 NYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC-MNLTAdgEACNECESC 81
Cdd:PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCkTGVTA--EPCNKCENC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 82 VAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEK 161
Cdd:PRK14957 80 VAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 162 HKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIE 241
Cdd:PRK14957 160 HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQ 239
|
250 260
....*....|....*....|....*.
gi 1720219870 242 NLNVLDYEYYFRLTDCFLENKVSDAL 267
Cdd:PRK14957 240 MLGIIDSEEVYSIINAIIDNDPKAIL 265
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
9-484 |
6.27e-75 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 250.18 E-value: 6.27e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 9 RKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTAdGEACNECESCVAF--NE 86
Cdd:PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATPCGVCESCVALapNG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 87 QRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILP 166
Cdd:PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 167 TILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEpEALNVIALKADGG-MRDALSIFDQ-VVSFTGGNITYKSVIENLN 244
Cdd:PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGsPRDTLSVLDQlLAGAADTHVTYQRALGLLG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 245 VLDYEYYFRLTDCFLENkvsDALLLF---NDVLNKGFDGSHFITGLSSHFRDLLVSK---DAATLQLLEVGAGIRQRYQE 318
Cdd:PRK14952 243 ATDVALIDDAVDALAAD---DAAALFgaiESVIDAGHDPRRFATDLLERFRDLIVLQavpDAAARGVVDAPEDVLERMRE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 319 QAQKCALPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVAqLTVEGDDGSggrGPKQAIKPIFTQ-----PAAAqqpq 393
Cdd:PRK14952 320 QAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL-LPSASDAES---ALLQRVERIETRldmsiPANL---- 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 394 vapIASPSQSMNAATPVAPQAVSQQAGSSPAVNVRPGGAVSPSGA----MPDAVRMAQFKEEKKIPVMKKSSL------- 462
Cdd:PRK14952 392 ---LHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAavrsMWSTVRDKVRQRSRTTEVMLAGATvralegn 468
|
490 500
....*....|....*....|....*..
gi 1720219870 463 GLSIKHPQ-----KEEEQRGAGVVHTA 484
Cdd:PRK14952 469 TLVLTHESaplarRLSEQRNADVLAEA 495
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
4-270 |
5.04e-74 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 250.74 E-value: 5.04e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC-MNLTAdgEACNECESCV 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCeTGVTS--TPCEVCATCK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK14960 80 AVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
Cdd:PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEM 239
|
250 260 270
....*....|....*....|....*....|.
gi 1720219870 243 LNVLDYEYYFRLTDCFLEN---KVSDALLLF 270
Cdd:PRK14960 240 LGLIDRTIIYDLILAVHQNqreKVSQLLLQF 270
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
4-256 |
2.01e-71 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 246.30 E-value: 2.01e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 4 YIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINC-MNLTAdgEACNECESCV 82
Cdd:PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCeTGVTS--QPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKH 162
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240
|
250
....*....|....
gi 1720219870 243 LNVLDYEYYFRLTD 256
Cdd:PRK07003 241 LGALDQTYMVRLLD 254
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
6-289 |
6.26e-63 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 216.13 E-value: 6.26e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 6 VSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECESCVAFN 85
Cdd:PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK-GVSANPCNDCENCREID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 86 EQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKIL 165
Cdd:PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 166 PTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNV 245
Cdd:PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGT 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1720219870 246 LDYEYYFRLTDCfLENKVSDALL-LFNDVLNKGFDGSHFITGLSS 289
Cdd:PRK14958 244 IEPLLLFDILEA-LAAKAGDRLLgCVTRLVEQGVDFSNALADLLS 287
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
21-181 |
9.46e-54 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 180.48 E-value: 9.46e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 21 GQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECESCVAFNEQRSYNIHELDAASN 100
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEE-PGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 101 N-SVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNR 179
Cdd:pfam13177 80 SiKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
..
gi 1720219870 180 IS 181
Cdd:pfam13177 160 LS 161
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
22-220 |
1.88e-51 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 179.02 E-value: 1.88e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 22 QRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNlTADGEACNECeSCVAFNEQRSYNIHELDAASNN 101
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCEN-PEGGKACGQC-HSRLMAAGNHPDLLELNPEEKS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 102 ---SVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Cdd:COG0470 79 dqiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFR 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1720219870 179 RISVDDTVNHLTyvasKEGItaEPEALNVIALKADGGMRDAL 220
Cdd:COG0470 159 PPSEEEALAWLR----EEGV--DEDALEAILRLAGGDPRAAI 194
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
27-215 |
4.77e-47 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 163.57 E-value: 4.77e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 27 TTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTaDGEACNECESCVAFnEQRSY-NIHELDAASNN-SVD 104
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRG-GGEPCGECHSCRLI-EAGNHpDLHRLEPEGQSiKVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 105 DIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDD 184
Cdd:TIGR00678 80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEA 159
|
170 180 190
....*....|....*....|....*....|.
gi 1720219870 185 TVNHLTyvasKEGITAEPEALnviALKADGG 215
Cdd:TIGR00678 160 LLQWLI----RQGISEEAAEL---LLALAGG 183
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
22-199 |
6.75e-32 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 126.19 E-value: 6.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 22 QRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTaDGEACNECESCVAFNEQRSYNIHEL--DAAS 99
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERN-GVEPCGTCTNCKRIDSGNHPDVHLVapDGQS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 100 NNsVDDIRQL--------VEQVRippqigkyKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSR 171
Cdd:PRK08058 90 IK-KDQIRYLkeefsksgVESNK--------KVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160
|
170 180
....*....|....*....|....*...
gi 1720219870 172 CQIYDFNRISVDDTVNHLTyvasKEGIT 199
Cdd:PRK08058 161 CQVVEFRPLPPESLIQRLQ----EEGIS 184
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
10-239 |
2.46e-30 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 121.52 E-value: 2.46e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHaYLFCGPRGVGKTTCARIFAKTINcmnltadGEACNEcescvafneqrs 89
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELY-------GEDWRE------------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 90 yNIHELDAASNNSVDDIRQLVEQ-VRIPPqIGK--YKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILP 166
Cdd:PRK00440 70 -NFLELNASDERGIDVIRNKIKEfARTAP-VGGapFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIID 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720219870 167 TILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFdQVVSFTGGNITYKSV 239
Cdd:PRK00440 148 PIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAV 219
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
16-184 |
1.43e-29 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 119.23 E-value: 1.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 16 FESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTIncmnltADGEACNECESCVAFN---------- 85
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL------LSQGSPSKNIRRRLEEgnhpdllwve 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 86 ----EQ-RSYNIHELDAA--SNNSVDDIRqlVEQVR-I------PPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEpPRH 151
Cdd:PRK07399 77 ptyqHQgKLITASEAEEAglKRKAPPQIR--LEQIReIkrflsrPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGN 153
|
170 180 190
....*....|....*....|....*....|...
gi 1720219870 152 AIFILATTEKHKILPTILSRCQIYDFNRISVDD 184
Cdd:PRK07399 154 GTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQ 186
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
8-243 |
2.24e-29 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 120.57 E-value: 2.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 8 ARKYRPSTFESVVGQRALT---TTLKNAIATQKLAHAyLFCGPRGVGKTTCARIFAKTINCmnltadgeacneceSCVAF 84
Cdd:PRK13342 3 AERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDA--------------PFEAL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 85 NeqrsyniheldaASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEppRHAIFILATTE--KH 162
Cdd:PRK13342 68 S------------AVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSF 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 163 KILPTILSRCQIYDFNRISVDDTVNHLTYVASKEG---ITAEPEALNVIALKADGGMRDALSIFDQVVSfTGGNITYKSV 239
Cdd:PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKErglVELDDEALDALARLANGDARRALNLLELAAL-GVDSITLELL 212
|
....
gi 1720219870 240 IENL 243
Cdd:PRK13342 213 EEAL 216
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
28-173 |
1.06e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 108.25 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 28 TLKNAIATQK-LAHAYLFCGPRGVGKTTCARIFAKTINCMNLTAdGEACNECESC---VAFNEQRSYNIHELDAASNNSV 103
Cdd:PRK05707 10 SLWQQLAGRGrHPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-GGACGSCKGCqllRAGSHPDNFVLEPEEADKTIKV 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 104 DDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173
Cdd:PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
180-244 |
2.78e-25 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 99.12 E-value: 2.78e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 180 ISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLN 244
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
10-306 |
4.56e-25 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 106.61 E-value: 4.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHaYLFCGPRGVGKTTCARIFAKtincmNLTADGEACNECESCVA--FNEQ 87
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALAR-----ELYGDPWENNFTEFNVAdfFDQG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 88 RSY--------NIHELDAASNNSV-DDIRQLV-EQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILA 157
Cdd:PRK12402 82 KKYlvedprfaHFLGTDKRIRSSKiDNFKHVLkEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 158 TTEKHKILPTILSRC-QIYdFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALsIFDQVVSFTGGNITY 236
Cdd:PRK12402 162 TRQPSKLIPPIRSRClPLF-FRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQTAALAAGEITM 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720219870 237 KSVIENLNVLDYEYYFR-LTDCFLENKVSDALLLFNDVL-NKGFDGSHFITGLSSHFRDLLVSKDAATLQLL 306
Cdd:PRK12402 240 EAAYEALGDVGTDEVIEsLLDAAEAGDFTDARKTLDDLLiDEGLSGGEVLEELLRVARSRYRGDNLARLHRL 311
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
16-191 |
6.93e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 105.50 E-value: 6.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 16 FESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTIncmnltadgeacnecescVAFNEQRSY-NIHE 94
Cdd:PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI------------------LGKSQQREYvDIIE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 95 LDAASNNS--VDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172
Cdd:PRK05564 65 FKPINKKSigVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144
|
170
....*....|....*....
gi 1720219870 173 QIYDFNRISVDDTVNHLTY 191
Cdd:PRK05564 145 QIYKLNRLSKEEIEKFISY 163
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
12-233 |
2.75e-24 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 105.91 E-value: 2.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 12 RPSTFESVVGQRALT---TTLKNAIATQKLaHAYLFCGPRGVGKTTCARIFAKTINcmnltadgeacnecescvafneqr 88
Cdd:COG2256 20 RPRTLDEVVGQEHLLgpgKPLRRAIEAGRL-SSMILWGPPGTGKTTLARLIANATD------------------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 89 sYNIHELDAASNNsVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEppRHAIFILATTEK--HKILP 166
Cdd:COG2256 75 -AEFVALSAVTSG-VKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVED--GTITLIGATTENpsFEVNS 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720219870 167 TILSRCQIYDFNRISVDD-------TVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGN 233
Cdd:COG2256 151 ALLSRCRVFVLKPLSEEDleqllerALADDERGLGGYKLELDDEALEALARLADGDARRALNALELAVLSAPPD 224
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
14-201 |
1.06e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 100.76 E-value: 1.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 14 STFESVVGQRALTTTLKNA---------IATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGeaCNECESC--- 81
Cdd:PRK07940 2 SVWDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPG--CGECRACrtv 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 82 -------VAF--NEQRSYniheldaasnnSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHA 152
Cdd:PRK07940 80 lagthpdVRVvaPEGLSI-----------GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRT 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1720219870 153 IFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHLTyvaSKEGITAE 201
Cdd:PRK07940 149 VWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV---RRDGVDPE 194
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
36-204 |
2.17e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 98.40 E-value: 2.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 36 QKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECESCVAFNEQRSYNIHELDAASNN----------SVDD 105
Cdd:PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEpengrkllqiKIDA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 106 IRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDT 185
Cdd:PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEA 177
|
170
....*....|....*....
gi 1720219870 186 VNHLtyvasKEGITAEPEA 204
Cdd:PRK08699 178 LAYL-----RERGVAEPEE 191
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
40-200 |
4.31e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 97.50 E-value: 4.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 40 HAYLFCGPRGVGKTTCARIFAKTINCMNLTADgEACNECESCVAFNEQRSYNIHELDAASNNS--VDDIRQLVEQVRIPP 117
Cdd:PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGD-QPCGQCHSCHLFQAGNHPDFHILEPIDNKDigVDQVREINEKVSQHA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 118 QIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHL---TYVAS 194
Cdd:PRK06871 104 QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLqaqSSAEI 183
|
....*.
gi 1720219870 195 KEGITA 200
Cdd:PRK06871 184 SEILTA 189
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
13-241 |
5.13e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 94.72 E-value: 5.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 13 PSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKtincmNLTADGEACNECESCVA--FNEQRSY 90
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN-----HILSHPDPAEAPETLADpdPASPVWR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 91 NIHEldAASNN-------------------SVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRH 151
Cdd:PRK09112 94 QIAQ--GAHPNllhitrpfdektgkfktaiTVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 152 AIFILATTEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITaePEALNVIALKADGGMRDALsifdQVVSFTG 231
Cdd:PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSD--GEITEALLQRSKGSVRKAL----LLLNYGG 245
|
250
....*....|..
gi 1720219870 232 GNI--TYKSVIE 241
Cdd:PRK09112 246 LEIiaTIDQLLA 257
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
29-173 |
6.06e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 94.10 E-value: 6.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 29 LKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTAdgEACNECESCVAFNEQRSYNIHELDAASNN---SVDD 105
Cdd:PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHPDLHVIKPEKEGksiTVEQ 92
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720219870 106 IRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQ 173
Cdd:PRK06090 93 IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
10-220 |
7.07e-21 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 94.03 E-value: 7.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKnAIATQKLAHAYLFCGPRGVGKTTCarifaktINCMNLTADGEACNECescvafneqrs 89
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQ-VIARDGNMPNLILSGPPGTGKTTS-------ILALAHELLGPNYKEA----------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 90 ynIHELDAASNNSVDDIRQLVE-----QVRIPPqiGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKI 164
Cdd:PLN03025 67 --VLELNASDDRGIDVVRNKIKmfaqkKVTLPP--GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKI 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720219870 165 LPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDAL 220
Cdd:PLN03025 143 IEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQAL 198
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
19-225 |
9.89e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 94.33 E-value: 9.89e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 19 VVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECESC-------VA-------- 83
Cdd:PRK07471 21 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLaidpdhpVArriaagah 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 84 ---FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTE 160
Cdd:PRK07471 101 gglLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHA 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 161 KHKILPTILSRCQIYDFNRISVDDTVNHLTYVAskeGITAEPEALNVIALkADGGMRDALSIFDQ 225
Cdd:PRK07471 181 PARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG---PDLPDDPRAALAAL-AEGSVGRALRLAGG 241
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
37-173 |
1.59e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 93.29 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECESCVAFNE--QRSYNI---HELDAASNNSVDD------ 105
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQgnHPDYRIvrpEALAAEAPGAADEakeada 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 106 ------------------IRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPT 167
Cdd:PRK06964 99 deggkktkapskeikieqVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
....*.
gi 1720219870 168 ILSRCQ 173
Cdd:PRK06964 179 ILSRCR 184
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
83-346 |
3.20e-16 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 79.91 E-value: 3.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 83 AFNEQRSYNIHELDAASnnsvDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSA--SAFNAFLKTLEEPPRHAIFILAT-- 158
Cdd:COG1466 28 ALAEDDGFNRTRLDGAE----TDWAELLDEAQTLSLFGERRLVIVRNAEFLKKpgEGLEALEAYLANPPPDTVLVLTAgk 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 159 -TEKHKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTG--GNIT 235
Cdd:COG1466 104 lDKRKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALYAGdgGTIT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 236 YKSVIENL-NVLDYEYyFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK--------DAATLQLL 306
Cdd:COG1466 184 LEDVEALVgDSAEFNV-FDLADALLAGDAARALRILRRLLAEGEEPVLILAALARQFRLLLQVKallaqgksLAEIAKEL 262
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1720219870 307 EVGAGIRQRYQEQAQKCALPFLYRAMKLCNDCDmnyRASK 346
Cdd:COG1466 263 GVPPFRVKLALRALRRWSLERLARALQLLAEAD---LALK 299
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
22-189 |
6.95e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 78.61 E-value: 6.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 22 QRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACNECEscVAFneqrsYNIHELDAASNN 101
Cdd:PRK07132 1 MNNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN--IIL-----FDIFDKDLSKSE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 102 SVDDIRQL----VEQvrippqiGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDF 177
Cdd:PRK07132 74 FLSAINKLyfssFVQ-------SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146
|
170
....*....|..
gi 1720219870 178 NRISVDDTVNHL 189
Cdd:PRK07132 147 KEPDQQKILAKL 158
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
84-222 |
8.53e-15 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 77.96 E-value: 8.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 84 FNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIG--KYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEK 161
Cdd:PRK04132 591 FGENWRHNFLELNASDERGINVIREKVKEFARTKPIGgaSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 670
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720219870 162 HKILPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSI 222
Cdd:PRK04132 671 SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINI 731
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
102-172 |
1.28e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 74.83 E-value: 1.28e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720219870 102 SVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172
Cdd:PRK05917 76 SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
37-177 |
1.86e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 74.28 E-value: 1.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 37 KLAHAYLFCGprGVGKTTCARIFAKTINCMNLTaDGEACNECESC--VAFNEQRSYNIHEldaASNNSV--DDIRQLVEQ 112
Cdd:PRK07276 22 RLNHAYLFSG--DFASFEMALFLAQSLFCEQKE-GVLPCGHCRSCrlIEQGEFSDVTVIE---PQGQVIktDTIRELVKN 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 113 VRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDF 177
Cdd:PRK07276 96 FSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF 160
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
10-241 |
5.47e-14 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 74.57 E-value: 5.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKNAIAT------QKlahAYLFCGPRGVGKTTCARIFAKTINcmnltadgeacnecescva 83
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESwlkgkpKK---ALLLYGPPGVGKTSLAHALANDYG------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 84 fneqrsYNIHELDAASNNSVDDIRQLVEQVRIPPQIG--KYKVYIIDEVHMLS----ASAFNAFLKTLEEPpRHAIfILA 157
Cdd:PRK04195 65 ------WEVIELNASDQRTADVIERVAGEAATSGSLFgaRRKLILLDEVDGIHgnedRGGARAILELIKKA-KQPI-ILT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 158 TTEKHKI-LPTILSRCQIYDFNRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDAlsIFD-QVVSFTGGNIT 235
Cdd:PRK04195 137 ANDPYDPsLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA--INDlQAIAEGYGKLT 214
|
....*.
gi 1720219870 236 YKSVIE 241
Cdd:PRK04195 215 LEDVKT 220
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
22-177 |
6.32e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 73.07 E-value: 6.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 22 QRALTTTLKnAIATQKLAHAYLFCGPRGVGKTTCARIFAKTIncMNLTADGEACNECESCVAFNEQRsyNIHELDAASNN 101
Cdd:PRK08769 10 QRAYDQTVA-ALDAGRLGHGLLICGPEGLGKRAVALALAEHV--LASGPDPAAAQRTRQLIAAGTHP--DLQLVSFIPNR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 102 SVDDIRQ--LVEQVR-------IPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172
Cdd:PRK08769 85 TGDKLRTeiVIEQVReisqklaLTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164
|
....*
gi 1720219870 173 QIYDF 177
Cdd:PRK08769 165 QRLEF 169
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
20-174 |
4.88e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 66.79 E-value: 4.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 20 VGQRALTTTLKNAIATQKLAHaYLFCGPRGVGKTTCARIFAKTIncmnltadgeacnecescvafnEQRSYNIHELDAAS 99
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANEL----------------------FRPGAPFLYLNASD 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 100 NNSVDDIR-----QLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEE------PPRHAIFILATT--EKHKILP 166
Cdd:cd00009 58 LLEGLVVAelfghFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDR 137
|
....*...
gi 1720219870 167 TILSRCQI 174
Cdd:cd00009 138 ALYDRLDI 145
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
75-215 |
1.38e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 69.32 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 75 CNECESC---VAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRH 151
Cdd:PRK07993 59 CGHCRGCqlmQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEN 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720219870 152 AIFILATTEKHKILPTILSRCQIYdfnRISVDDTVNHLTYVASKegITAEPEALNViALKADGG 215
Cdd:PRK07993 139 TWFFLACREPARLLATLRSRCRLH---YLAPPPEQYALTWLSRE--VTMSQDALLA-ALRLSAG 196
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
10-209 |
6.62e-12 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 66.94 E-value: 6.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFaktincmnltadgeaCNECESCVAF-Neqr 88
Cdd:PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL---------------CNEVGAEVLFvN--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 89 syniheldaASNNSVDDIR-QLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTL-EEPPRHAIFILATTEKHKILP 166
Cdd:PHA02544 76 ---------GSDCRIDFVRnRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKNGIIE 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1720219870 167 TILSRCQIYDFNRISVDDTVN-------HLTYVASKEGITAEPealNVIA 209
Cdd:PHA02544 147 PLRSRCRVIDFGVPTKEEQIEmmkqmivRCKGILEAEGVEVDM---KVLA 193
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
59-175 |
1.60e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 62.16 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 59 FAKTINCMNLTAdgeACNECESCVAFNEQRSYNIHeLDAASNNSV--DDIRQLVEQV-RIPPQIGKYKVYIIDEVHMLSA 135
Cdd:PRK05818 27 YLTSIVCTKANG---FCKTCESCLKILNGKYNDFY-LIFDQKNPIkkEDALSIINKLnRPSVESNGKKIYIIYGIEKLNK 102
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1720219870 136 SAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIY 175
Cdd:PRK05818 103 QSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
8-220 |
1.25e-09 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 61.22 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 8 ARKYRPSTFESVVGQRALTTT---LKNAIATQKLAHAyLFCGPRGVGKTTCARIFAKTINC----MNLTADGeacneces 80
Cdd:PRK13341 19 ADRLRPRTLEEFVGQDHILGEgrlLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRAhfssLNAVLAG-------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 81 cvafneqrsyniheldaasnnsVDDIRQLVEQVRipPQIGKY---KVYIIDEVHMLSASAFNAFLKTLEEPPrhAIFILA 157
Cdd:PRK13341 90 ----------------------VKDLRAEVDRAK--ERLERHgkrTILFIDEVHRFNKAQQDALLPWVENGT--ITLIGA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720219870 158 TTEK--HKILPTILSRCQIYDFNRISVDD-------TVNHLTYVASKEGITAEPEALNVIALKADGGMRDAL 220
Cdd:PRK13341 144 TTENpyFEVNKALVSRSRLFRLKSLSDEDlhqllkrALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
42-174 |
7.94e-09 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 54.14 E-value: 7.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 42 YLFCGPRGVGKTTCARIFAKTINcmnltadgeacnecescvafneqrsYNIHELDAAS------NNSVDDIRQLVEQVRI 115
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG-------------------------APFIEISGSElvskyvGESEKRLRELFEAAKK 55
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720219870 116 PPQigkyKVYIIDEVHMLSAS-----------AFNAFLKTLEEPPRHA---IFILATTEKHKILPTILSRCQI 174
Cdd:pfam00004 56 LAP----CVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNskvIVIAATNRPDKLDPALLGRFDR 124
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
124-177 |
1.07e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 55.81 E-value: 1.07e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1720219870 124 VYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDF 177
Cdd:PRK08485 57 KIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKR 110
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
98-172 |
4.54e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 54.47 E-value: 4.54e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 98 ASNNSVDDIRQLVEQVRIPPQIGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRC 172
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC 140
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
16-173 |
4.89e-08 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 54.12 E-value: 4.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 16 FESVVGQRALTTTLKNAIATQKLA-----------HAYLFCGPRGVGKTTCARIFAKTINCMNLTADGEACnecescvaf 84
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKELRRRenlrkfglwppRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSL--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 85 neqrsynIHEL--DAASNnsvddIRQLVEQVRIPPQigkykVYIIDEVHMLSAS------------AFNAFLKTLEEPPR 150
Cdd:COG1223 72 -------IGSYlgETARN-----LRKLFDFARRAPC-----VIFFDEFDAIAKDrgdqndvgevkrVVNALLQELDGLPS 134
|
170 180
....*....|....*....|...
gi 1720219870 151 HAIFILATTEKHKILPTILSRCQ 173
Cdd:COG1223 135 GSVVIAATNHPELLDSALWRRFD 157
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
42-175 |
6.68e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 6.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 42 YLFCGPRGVGKTTCARIFAKTINCMN---LTADGEACNEcescvAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPpq 118
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGggvIYIDGEDILE-----EVLDQLLLIIVGGKKASGSGELRLRLALALARKL-- 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720219870 119 igKYKVYIIDEVHMLSASAFNA--------FLKTLEEPPRHAIFILATTEKHKILPTIL---SRCQIY 175
Cdd:smart00382 78 --KPDVLILDEITSLLDAEQEAllllleelRLLLLLKSEKNLTVILTTNDEKDLGPALLrrrFDRRIV 143
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
105-360 |
9.91e-08 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 53.80 E-value: 9.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 105 DIRQLVEQVRIPPQIGKYKVYIIDE-VHMLSASAFNAFLKTLEEPPRHAIFIL------ATTEKHKILPTILSRCQIyDF 177
Cdd:TIGR01128 30 DWNQLLEEAQTLPLFSERRLVELRNpEGKPGAKGLKALEEYLANPPPDTLLLIeapkldKRKKLTKWLKALKNAEIV-EC 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 178 NRISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFT-GGNITYKSVIENLNVLDYEYYFRLTD 256
Cdd:TIGR01128 109 KTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYApDGKITLEDVEEAVSDSARFNVFDLTD 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 257 CFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAA----TLQLLEVGAGI----RQRYQEQAQKCALPFL 328
Cdd:TIGR01128 189 ALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAqqggPLAQLASKLGIwpyrRKLALKALRRLSLAKL 268
|
250 260 270
....*....|....*....|....*....|....
gi 1720219870 329 YRAMKLCNDCD--MNYRASKNKRLLVELTLIQVA 360
Cdd:TIGR01128 269 EQALQELAEADlqLKGTGGGDPWLALERLLLKLA 302
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
180-239 |
2.31e-06 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 45.21 E-value: 2.31e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 180 ISVDDTVNHLTYVASKEGITAEPEALNVIALKADGGMRDALSIFdQVVSFTGGNITYKSV 239
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDV 59
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
43-165 |
6.73e-06 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 45.80 E-value: 6.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 43 LFCGPRGVGKTTCARIFAKTincmnltadgeACNECESCVAFNEQRSYNIHEL----------DAASNNSVDDIRQLVEQ 112
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQ-----------LPEVRDSVVFVDLPSGTSPKDLlrallralglPLSGRLSKEELLAALQQ 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 113 VRIppQIGKYKVYIIDEVHMLSASAFNaFLKTLEEPPRHAI-FILA-TTEKHKIL 165
Cdd:pfam13401 78 LLL--ALAVAVVLIIDEAQHLSLEALE-ELRDLLNLSSKLLqLILVgTPELRELL 129
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
12-61 |
2.32e-05 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 44.80 E-value: 2.32e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 12 RPSTFESVVGQRALTTTLKNAIATQK-----LAHAyLFCGPRGVGKTTCARIFAK 61
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHV-LLYGPPGLGKTTLANIIAN 55
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
12-61 |
8.08e-05 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 45.12 E-value: 8.08e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1720219870 12 RPSTFESVVGQRALTTTLKNAI-ATQK----LAHAyLFCGPRGVGKTTCARIFAK 61
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIeAAKKrgeaLDHV-LLYGPPGLGKTTLANIIAN 73
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
10-73 |
3.24e-04 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 43.67 E-value: 3.24e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720219870 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHaYLFCGPRGVGKttCARIFAKTINCMNLTADGE 73
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGK--CLTGDTKVIANGELFEIGE 72
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
22-157 |
2.55e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 40.70 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 22 QRALTTTLKNAIATQKlahAYLFCGPRGVGKTTCARIFAKtincmnltadgeacnECESCVAFNeqrsyniheLDAASNN 101
Cdd:COG1373 6 KRKILDKLLKLLDNRK---AVVITGPRQVGKTTLLKQLAK---------------ELENILYIN---------LDDPRLR 58
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720219870 102 S--VDDIRQLVEqvRIPPQIGKYKVYIIDEVHMLSaSAFNAfLKTLEEPPRHAIFILA 157
Cdd:COG1373 59 AlaEEDPDDLLE--ALKELYPGKTYLFLDEIQRVP-EWEDA-LKRLVDDGRNGRFILT 112
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
7-180 |
9.50e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 38.74 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 7 SARKYRPSTFESVVGQRALTTTLKNAIATQ----KLAHAY--------LFCGPRGVGKTTCARIFAKTINcmnltadgea 74
Cdd:COG0464 147 ELLELREAILDDLGGLEEVKEELRELVALPlkrpELREEYglppprglLLYGPPGTGKTLLARALAGELG---------- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720219870 75 cnecescvafneqrsYNIHELDAAS-----------NnsvddIRQLVEQVR--IPPqigkykVYIIDEVHMLSAS----- 136
Cdd:COG0464 217 ---------------LPLIEVDLSDlvskyvgetekN-----LREVFDKARglAPC------VLFIDEADALAGKrgevg 270
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1720219870 137 ------AFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRcqiydFNRI 180
Cdd:COG0464 271 dgvgrrVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRR-----FDEI 315
|
|
| |
