NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1714722579|gb|QDX16678|]
View 

cytochrome b, partial (mitochondrion) [Otus angelinae]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-259 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 536.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00119   16 NNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00119   96 YLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00119  176 LTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00119  256 NFTPANPLVTPPHIKPEWY 274
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-259 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 536.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00119   16 NNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00119   96 YLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00119  176 LTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00119  256 NFTPANPLVTPPHIKPEWY 274
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-259 9.23e-100

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 296.32  E-value: 9.23e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   2 NSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIY 81
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  82 LHIGRGLYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVD 157
Cdd:COG1290   105 LHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 158 NPTLTRFFALH-FLLPFIIAGLTLIHLTFLHESGSNNPLGI----TSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFS 232
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260
                  ....*....|....*....|....*..
gi 1714722579 233 PNllGDPENFTPANPLVTPPHIKPEWY 259
Cdd:COG1290   263 PI--NPPPNYGPANPLATPAHIQPDWY 287
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-192 7.79e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 286.96  E-value: 7.79e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:cd00284     7 NNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 158
Cdd:cd00284    87 YLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDN 166

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1714722579 159 PTLTRFFALHFLLPFIIAGLTLIHLTFLHESGSN 192
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-190 9.90e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 9.90e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   4 LIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLH 83
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  84 IGRGLYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTL 161
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1714722579 162 TRFFALHFLLPFIIAGLTLIHLTFLHESG 190
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-259 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 536.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00119   16 NNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00119   96 YLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00119  176 LTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00119  256 NFTPANPLVTPPHIKPEWY 274
CYTB MTH00131
cytochrome b; Provisional
 1-259 1.16e-177

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 493.40  E-value: 1.16e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00131   15 NDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00131   95 YLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00131  175 LTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPD 254

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00131  255 NFTPANPLVTPPHIKPEWY 273
CYTB MTH00156
cytochrome b; Provisional
 1-259 3.23e-175

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 486.21  E-value: 3.23e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00156    5 NNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICI 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00156   85 YLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNAT 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00156  165 LTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPE 244

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00156  245 NFIPANPLVTPVHIQPEWY 263
CYTB MTH00100
cytochrome b; Provisional
 1-259 1.36e-172

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 480.67  E-value: 1.36e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00100   15 NHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00100   95 FLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00100  175 LTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPD 254

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00100  255 NYTPANPLNTPPHIKPEWY 273
CYTB MTH00074
cytochrome b; Provisional
 1-259 2.99e-171

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 477.25  E-value: 2.99e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00074   16 NNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00074   96 YLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00074  176 LTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPD 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00074  256 NFTPANPLVTPPHIQPEWY 274
CYTB MTH00191
cytochrome b; Provisional
 1-259 3.66e-169

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 471.32  E-value: 3.66e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00191   12 NGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICI 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00191   92 YLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNAT 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00191  172 LTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPE 251

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00191  252 NFIPANPLVTPVHIKPEWY 270
CYTB MTH00145
cytochrome b; Provisional
 1-259 4.19e-164

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 459.37  E-value: 4.19e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00145   16 NGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00145   96 YLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00145  176 LKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00145  256 NFIPANPMVTPVHIQPEWY 274
CYTB MTH00016
cytochrome b; Validated
 1-259 5.15e-156

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 438.73  E-value: 5.15e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00016   16 NGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00016   96 YLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00016  176 LTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00016  256 NFIPANPLVTPTHIKPEWY 274
CYTB MTH00034
cytochrome b; Validated
 1-259 1.31e-154

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 435.29  E-value: 1.31e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00034   15 NSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00034   95 YFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00034  175 LTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPE 254

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00034  255 NFIPANPLVTPPHIQPEWY 273
CYTB MTH00224
cytochrome b; Provisional
 1-259 2.23e-131

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 376.18  E-value: 2.23e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00224   16 NGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00224   96 YLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00224  176 LNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00224  256 NFLMANPLVTPIHIKPEWY 274
CYTB MTH00053
cytochrome b; Provisional
 1-259 6.56e-131

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 375.20  E-value: 6.56e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00053   16 NSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00053   96 YFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNAT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00053  176 LNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAE 255

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00053  256 NFKQANPLVTPVHIKPEWY 274
CYTB MTH00022
cytochrome b; Validated
 1-259 5.38e-128

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 367.87  E-value: 5.38e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:MTH00022   14 NGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPT 160
Cdd:MTH00022   94 YIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNAT 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 161 LTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPE 240
Cdd:MTH00022  174 LNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPE 253

                         250
                  ....*....|....*....
gi 1714722579 241 NFTPANPLVTPPHIKPEWY 259
Cdd:MTH00022  254 NFIQANSLVTPVHIQPEWY 272
CYTB MTH00033
cytochrome b; Provisional
 2-259 3.97e-102

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 302.24  E-value: 3.97e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   2 NSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIY 81
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  82 LHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTL 161
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 162 TRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFS--PNLLGDP 239
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260
                  ....*....|....*....|
gi 1714722579 240 ENFTPANPLVTPPHIKPEWY 259
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWY 272
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-259 9.23e-100

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 296.32  E-value: 9.23e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   2 NSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIY 81
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  82 LHIGRGLYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVD 157
Cdd:COG1290   105 LHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 158 NPTLTRFFALH-FLLPFIIAGLTLIHLTFLHESGSNNPLGI----TSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFS 232
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260
                  ....*....|....*....|....*..
gi 1714722579 233 PNllGDPENFTPANPLVTPPHIKPEWY 259
Cdd:COG1290   263 PI--NPPPNYGPANPLATPAHIQPDWY 287
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-192 7.79e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 286.96  E-value: 7.79e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICI 80
Cdd:cd00284     7 NNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLML 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  81 YLHIGRGLYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 158
Cdd:cd00284    87 YLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDN 166

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1714722579 159 PTLTRFFALHFLLPFIIAGLTLIHLTFLHESGSN 192
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00086
cytochrome b; Provisional
 1-259 5.39e-97

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 287.99  E-value: 5.39e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   1 NNSL-IDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFIC 79
Cdd:MTH00086    3 VNSLvVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  80 IYLHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 159
Cdd:MTH00086   83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 160 TLTRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDtLGLALLLLPLTTLALFSPNLLGDP 239
Cdd:MTH00086  163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDP 241

                         250       260
                  ....*....|....*....|
gi 1714722579 240 ENFTPANPLVTPPHIKPEWY 259
Cdd:MTH00086  242 EMFIEADPMMSPVHIVPEWY 261
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
4-190 9.90e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 9.90e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   4 LIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLH 83
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  84 IGRGLYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTL 161
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1714722579 162 TRFFALHFLLPFIIAGLTLIHLTFLHESG 190
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 2-259 4.52e-75

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 232.18  E-value: 4.52e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579   2 NSLIDLPTPPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIY 81
Cdd:MTH00046    7 RNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  82 LHIGRGLYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTL 161
Cdd:MTH00046   87 IHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 162 TRFFALHFLLPFIIAGLTLIHLTFLHESGSNNPLGIT---SDCdkIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGD 238
Cdd:MTH00046  167 VRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSngySDV--VYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLD 244

                         250       260
                  ....*....|....*....|.
gi 1714722579 239 PENFTPANPLVTPPHIKPEWY 259
Cdd:MTH00046  245 IEAYLEADPLVTPVSIKPEWY 265
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
74-239 3.00e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 144.31  E-value: 3.00e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  74 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAW 151
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579 152 GGFSVDNPTLTRFFALHF-LLPFIIAGLTLIHLTFLHESGSNNPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLAL 230
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1714722579 231 FSPNLLGDP 239
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 19-195 1.84e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 125.98  E-value: 1.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  19 FGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 97
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  98 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFII 175
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1714722579 176 AGLTLIHLTFLHESGSNNPL 195
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 10-195 5.01e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 122.14  E-value: 5.01e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  10 PPNISAWWNFGSLLGICLMTQIITGLLLAAHYTADSTLAFSSVAHTCRNVQYGWLLRNLHANGASFFFICIYLHIGRGLY 89
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714722579  90 YGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 167
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1714722579 168 H-FLLPFIIAGLTLIHLTFLHESGSNNPL 195
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 193-259 8.37e-19

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 80.38  E-value: 8.37e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1714722579 193 NPLGITSDCDKIPFHPYFSMKDTLGLALLLLPLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 259
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWY 67
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
244-259 1.16e-05

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 43.24  E-value: 1.16e-05
                          10
                  ....*....|....*.
gi 1714722579 244 PANPLVTPPHIKPEWY 259
Cdd:pfam00032   1 PANPLVTPAHIVPEWY 16
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH