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Conserved domains on  [gi|171464983|gb|ACB45895|]
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cytochrome b, partial (mitochondrion) [Holochilus brasiliensis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 551.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00100 321 SQCL 324
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 551.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00100 321 SQCL 324
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-320 3.92e-96

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 289.77  E-value: 3.92e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   9 LYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGAS 88
Cdd:COG1290   18 LPLASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  89 MFFICLFIHVGRGIYYGSFM----LNetWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWI 164
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 165 WGGLSVDKATLTRFFAFQ-FILPFIITALVLVHLLYLHETGSNNPSG----LNSDSDKIPFHPYYTIKDLLGILFLLMVL 239
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 240 MFLVLFFPkvSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNN--LGGVLALLLSSLFLAAFPLLNSSKQHGLIY 317
Cdd:COG1290  256 ALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGSakLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333


                 ...
gi 171464983 318 RPI 320
Cdd:COG1290  334 RPV 336
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.96e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.69  E-value: 3.96e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   9 LYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  89 MFFICLFIHVGRGIYYGSFM--LNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 171464983 167 GLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.26e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 245.75  E-value: 1.26e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   18 FIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   98 VGRGIYYGSF--MLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 171464983  176 TRFFAFQFILPFIITALVLVHLLYLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 551.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00100 321 SQCL 324
CYTB MTH00131
cytochrome b; Provisional
 1-324 1.30e-179

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 501.49  E-value: 1.30e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00131 321 TQFL 324
CYTB MTH00119
cytochrome b; Provisional
 1-324 2.67e-176

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 492.88  E-value: 2.67e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00119 322 SQLL 325
CYTB MTH00074
cytochrome b; Provisional
 1-324 7.95e-176

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 491.89  E-value: 7.95e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00074 322 TQIL 325
CYTB MTH00191
cytochrome b; Provisional
 4-324 2.51e-170

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 477.10  E-value: 2.51e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   4 MRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  84 ANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 164 IWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLV 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 244 LFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPITQM 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320


                 .
gi 171464983 324 L 324
Cdd:MTH00191 321 V 321
CYTB MTH00156
cytochrome b; Provisional
 11-324 3.71e-169

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 473.89  E-value: 3.71e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  11 LKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  91 FICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 171 DKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLVLFFPKVS 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 171464983 251 ETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPITQML 324
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKIL 314
CYTB MTH00145
cytochrome b; Provisional
 1-324 4.94e-158

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 446.66  E-value: 4.94e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00145 322 NQVL 325
CYTB MTH00034
cytochrome b; Validated
 4-324 5.78e-158

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 446.46  E-value: 5.78e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   4 MRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  84 ANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 164 IWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLV 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 244 LFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPITQM 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323


                 .
gi 171464983 324 L 324
Cdd:MTH00034 324 A 324
CYTB MTH00016
cytochrome b; Validated
 1-324 3.50e-154

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 436.80  E-value: 3.50e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00016 322 NQIL 325
CYTB MTH00224
cytochrome b; Provisional
 4-324 2.01e-134

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 386.97  E-value: 2.01e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   4 MRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  84 ANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 164 IWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLV 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 244 LFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPITQM 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324


                 .
gi 171464983 324 L 324
Cdd:MTH00224 325 L 325
CYTB MTH00022
cytochrome b; Validated
 1-324 5.16e-132

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 380.59  E-value: 5.16e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   1 MTIMRKTPLyLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00022   1 MPLRKENPL-LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  81 YMHANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTL 160
Cdd:MTH00022  80 YLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 161 VEWIWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLM 240
Cdd:MTH00022 160 VQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLS 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 241 FLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00022 240 FIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPL 319


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00022 320 GRMA 323
CYTB MTH00053
cytochrome b; Provisional
 4-324 3.71e-129

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 373.66  E-value: 3.71e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   4 MRKTPLYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  84 ANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEW 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 164 IWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLV 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 244 LFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPITQM 323
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324


                 .
gi 171464983 324 L 324
Cdd:MTH00053 325 L 325
CYTB MTH00033
cytochrome b; Provisional
 4-324 9.80e-104

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 308.79  E-value: 9.80e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   4 MRKTPLYLKImnHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMH 83
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  84 ANGASMFFICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEW 163
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 164 IWGGLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGIlFLLMVLMFLV 243
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGF-LILFGVFVII 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 244 LFFPKVSETL---DNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPI 320
Cdd:MTH00033 240 GIEPRIETLLqdpENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPT 319


                 ....
gi 171464983 321 TQML 324
Cdd:MTH00033 320 GKFF 323
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-320 3.92e-96

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 289.77  E-value: 3.92e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   9 LYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGAS 88
Cdd:COG1290   18 LPLASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  89 MFFICLFIHVGRGIYYGSFM----LNetWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWI 164
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 165 WGGLSVDKATLTRFFAFQ-FILPFIITALVLVHLLYLHETGSNNPSG----LNSDSDKIPFHPYYTIKDLLGILFLLMVL 239
Cdd:COG1290  176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 240 MFLVLFFPkvSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNN--LGGVLALLLSSLFLAAFPLLNSSKQHGLIY 317
Cdd:COG1290  256 ALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGSakLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333


                 ...
gi 171464983 318 RPI 320
Cdd:COG1290  334 RPV 336
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.96e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.69  E-value: 3.96e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   9 LYLKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  89 MFFICLFIHVGRGIYYGSFM--LNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 171464983 167 GLSVDKATLTRFFAFQFILPFIITALVLVHLLYLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00086
cytochrome b; Provisional
 12-291 4.83e-87

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 265.26  E-value: 4.83e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  12 KIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  92 ICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 172 KATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLVLFFPKVSE 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIFSLFYPFNLGD 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 171464983 252 TlDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGV 291
Cdd:MTH00086 241 P-EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.26e-81

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 245.75  E-value: 1.26e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   18 FIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   98 VGRGIYYGSF--MLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 171464983  176 TRFFAFQFILPFIITALVLVHLLYLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 11-290 3.43e-66

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 211.77  E-value: 3.43e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  11 LKIMNHSFIDLPTPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMF 90
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  91 FICLFIHVGRGIYYGSFMLNETWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSV 170
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 171 DKATLTRFFAFQFILPFIITALVLVHLLYLHETGSNNP-SGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLVLFFPKV 249
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 171464983 250 SETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGG 290
Cdd:MTH00046 242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
PRK03735 PRK03735
cytochrome b6; Provisional
 33-189 6.18e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 126.75  E-value: 6.18e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  33 FGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFIHVGRGIYYGSFMLNE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 112 -TWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSVDKATLTRFFAFQ-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-231 1.26e-32

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 118.88  E-value: 1.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983   88 SMFFICLFIHVGRGIYYGSFM----LNetWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEW 163
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRkpreLN--WIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWL 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171464983  164 IWGGLSVDKATLTRFFAFQF-ILPFIITALVLVHLLYLHETGSNNPSGLNSDSDKIPFHPYYTIKDLLG 231
Cdd:pfam13631  79 LFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLF 147
petB CHL00070
cytochrome b6
 24-188 4.81e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.66  E-value: 4.81e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983  24 PSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTTAAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFIHVGRGIY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 104 YGSFMLNE--TWNIGIILLLTTMATAFVGYVLPWGQMSLLSATVITNLLSAIPYIRTTLVEWIWGGLSVDKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                 ....*...
gi 171464983 182 Q-FILPFI 188
Cdd:CHL00070 187 HtFVLPLL 194
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-324 7.26e-26

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 100.41  E-value: 7.26e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464983 207 NPSGLNSDSDKIPFHPYYTIKDLLGILFLLMVLMFLVLFFPKVSETLDNYTPAKPLNTPAHIKPEWYLLFDYAFLRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 171464983 287 NLGGVLALLLSSLFLAAFPLLNSSKQHGLiYRPITQML 324
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTA 117
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-324 8.93e-15

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 69.04  E-value: 8.93e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 171464983  258 PAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGVLALLLSSLFLAAFPLLNSSKQHGLIYRPITQML 324
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIF 67
petD CHL00058
cytochrome b6/f complex subunit IV
 258-291 2.86e-04

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 40.76  E-value: 2.86e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 171464983 258 PAKPLNTPAHIKPEWYLLFDYAFLRSIPNNLGGV 291
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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