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Conserved domains on  [gi|171464977|gb|ACB45892|]
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cytochrome b, partial (mitochondrion) [Oligoryzomys destructor]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 573.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00100 321 SQCLF 325
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 573.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00100 321 SQCLF 325
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-320 3.27e-99

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 297.47  E-value: 3.27e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  11 LKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  91 FICLFIHVGRGIYYGSYM----LNetWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 167 LLQLDKATLTRFFAFH-FILPFIITALVLVHLLFLHETGSNNPSGLD----SNSDKIPFHPYYTIKDLLGILLLLMVLMF 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 242 LVLFFPDvlGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIP--NKLGGVLALLLSILILAAFPLLNTSKQHGLIYRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335


                 .
gi 171464977 320 I 320
Cdd:COG1290  336 V 336
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.85e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 257.30  E-value: 3.85e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   9 PLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  89 MFFICLFIHVGRGIYYGSYM--LNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 171464977 167 LLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 6.95e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.44  E-value: 6.95e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   18 FIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   98 VGRGIYYG--SYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQLDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 171464977  176 TRFFAFHFILPFIITALVLVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-325 3.41e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 49.41  E-value: 3.41e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171464977  258 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLL-NTSKQHGLIYRPITQMLY 325
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 573.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00100 321 SQCLF 325
CYTB MTH00131
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 519.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00131 321 TQFLF 325
CYTB MTH00119
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 518.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00119 322 SQLLF 326
CYTB MTH00074
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 511.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00074 322 TQILF 326
CYTB MTH00191
cytochrome b; Provisional
 4-325 5.23e-179

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 499.44  E-value: 5.23e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   4 MRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 164 WRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 244 LFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQM 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320


                 ..
gi 171464977 324 LY 325
Cdd:MTH00191 321 VF 322
CYTB MTH00156
cytochrome b; Provisional
 11-325 1.90e-174

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 487.37  E-value: 1.90e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  11 LKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  91 FICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQL 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 171 DKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLFFPDVL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 171464977 251 GDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQMLY 325
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILF 315
CYTB MTH00034
cytochrome b; Validated
 4-325 3.05e-167

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 469.96  E-value: 3.05e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   4 MRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 164 WRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 244 LFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQM 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323


                 ..
gi 171464977 324 LY 325
Cdd:MTH00034 324 AF 325
CYTB MTH00145
cytochrome b; Provisional
 1-325 4.87e-167

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 469.39  E-value: 4.87e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00145 322 NQVLF 326
CYTB MTH00016
cytochrome b; Validated
 1-325 5.31e-161

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 454.14  E-value: 5.31e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   1 MTIMRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTL 160
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 161 VGWWRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 241 FLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPI 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321


                 ....*
gi 171464977 321 TQMLY 325
Cdd:MTH00016 322 NQILF 326
CYTB MTH00022
cytochrome b; Validated
 4-325 5.22e-141

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 403.70  E-value: 5.22e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   4 MRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 164 WRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 244 LFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQM 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322


                 ..
gi 171464977 324 LY 325
Cdd:MTH00022 323 AF 324
CYTB MTH00224
cytochrome b; Provisional
 4-325 7.94e-138

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 395.44  E-value: 7.94e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   4 MRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 164 WRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 244 LFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQM 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324


                 ..
gi 171464977 324 LY 325
Cdd:MTH00224 325 LF 326
CYTB MTH00053
cytochrome b; Provisional
 4-325 5.37e-135

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 388.29  E-value: 5.37e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   4 MRKNHPLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGW 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 164 WRGLLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 244 LFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQM 323
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324


                 ..
gi 171464977 324 LY 325
Cdd:MTH00053 325 LF 326
CYTB MTH00033
cytochrome b; Provisional
 16-325 1.76e-103

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 308.41  E-value: 1.76e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  16 NSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLF 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  96 IHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQLDKATL 175
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 176 TRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVL--FFPDVLGDP 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDP 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 171464977 254 DNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQMLY 325
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFF 324
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-320 3.27e-99

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 297.47  E-value: 3.27e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  11 LKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  91 FICLFIHVGRGIYYGSYM----LNetWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 167 LLQLDKATLTRFFAFH-FILPFIITALVLVHLLFLHETGSNNPSGLD----SNSDKIPFHPYYTIKDLLGILLLLMVLMF 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 242 LVLFFPDvlGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIP--NKLGGVLALLLSILILAAFPLLNTSKQHGLIYRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335


                 .
gi 171464977 320 I 320
Cdd:COG1290  336 V 336
CYTB MTH00086
cytochrome b; Provisional
 12-308 1.63e-91

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 276.82  E-value: 1.63e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  12 KIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  92 ICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQLD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 172 KATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKDlLGILLLLMVLMFLVLFFPDVLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 171464977 252 DPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLN 308
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN 296
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.85e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 257.30  E-value: 3.85e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   9 PLLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  89 MFFICLFIHVGRGIYYGSYM--LNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 171464977 167 LLQLDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 6.95e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.44  E-value: 6.95e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   18 FIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   98 VGRGIYYG--SYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQLDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 171464977  176 TRFFAFHFILPFIITALVLVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 10-290 1.29e-72

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 228.33  E-value: 1.29e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  10 LLKIINNSFIDLPTPSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  90 FFICLFIHVGRGIYYGSYMLNETWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQ 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 170 LDKATLTRFFAFHFILPFIITALVLVHLLFLHETGSNNP-SGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLFFPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 171464977 249 VLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPNKLGG 290
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
PRK03735 PRK03735
cytochrome b6; Provisional
 33-189 2.33e-32

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 119.82  E-value: 2.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  33 FGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIHVGRGIYYGSYMLNE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 112 -TWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQLDKATLTRFFAFH-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-325 2.71e-32

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 117.36  E-value: 2.71e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 207 NPSGLDSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLFFPDVLGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 171464977 287 KLGGVLALLLSILILAAFPLLNTSKQHGLiYRPITQMLY 325
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAF 118
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-228 6.27e-30

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 111.95  E-value: 6.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977   88 SMFFICLFIHVGRGIYYGSYMLNE--TWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWR 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 171464977  166 GLLQLDKATLTRFFAFHF-ILPFIITALVLVHLLFLHETGSNNPSGLDSNSDKIPFHPYYTIKD 228
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
petB CHL00070
cytochrome b6
 24-188 6.50e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 110.58  E-value: 6.50e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977  24 PSNISAWWNFGSLLGISLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIHVGRGIY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171464977 104 YGSYMLNE--TWNIGIVLLLTTMATAFVAYVLPWGQMSFWRATVITNLLSAIPYIGTTLVGWWRGLLQLDKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                 ....*...
gi 171464977 182 H-FILPFI 188
Cdd:CHL00070 187 HtFVLPLL 194
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-325 6.51e-21

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 85.61  E-value: 6.51e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 171464977  258 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLLNTSKQHGLIYRPITQMLY 325
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFF 68
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 258-291 3.14e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.10  E-value: 3.14e-08
                         10        20        30
                 ....*....|....*....|....*....|....
gi 171464977 258 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGV 291
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
petD CHL00058
cytochrome b6/f complex subunit IV
 258-291 6.72e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 6.72e-08
                         10        20        30
                 ....*....|....*....|....*....|....
gi 171464977 258 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGV 291
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-325 3.41e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 49.41  E-value: 3.41e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171464977  258 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAAFPLL-NTSKQHGLIYRPITQMLY 325
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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