|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
649-1051 |
1.86e-165 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 497.90 E-value: 1.86e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 649 AFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHE 728
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 729 VFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKS 808
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 809 HTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIK 888
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 889 TLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTG 968
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 969 KYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWN 1048
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
...
gi 17131893 1049 IST 1051
Cdd:COG2319 401 LAT 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
691-1090 |
5.88e-164 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 494.04 E-value: 5.88e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 691 VFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDW 770
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 771 VRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIG 850
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 851 HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLK 930
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 931 AWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTG 1010
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1011 QCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWD 1090
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
775-1177 |
1.34e-160 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 485.57 E-value: 1.34e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 775 AFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNS 854
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 855 VYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYG 934
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 935 NTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQ 1014
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1015 ILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTG 1094
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1095 RCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWD 1174
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
...
gi 17131893 1175 VNT 1177
Cdd:COG2319 401 LAT 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
817-1219 |
7.78e-160 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 483.26 E-value: 7.78e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 817 AFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNE 896
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 897 VCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEG 976
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 977 HTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLK 1056
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1057 TLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQG 1136
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1137 KCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
...
gi 17131893 1217 VKT 1219
Cdd:COG2319 401 LAT 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
607-1009 |
3.26e-159 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 481.72 E-value: 3.26e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 607 DFSGLTVWQAYLQGVNLHDVDFANSDLSCCVFTETLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNW 686
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 687 VRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTG 766
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 767 HTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLK 846
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 847 TYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTG 926
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 927 QCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
...
gi 17131893 1007 IST 1009
Cdd:COG2319 401 LAT 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
859-1228 |
8.48e-139 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 428.18 E-value: 8.48e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 859 AYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDW 938
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 939 ALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLE 1018
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1019 HTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVG 1098
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1099 ILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTG 1178
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 17131893 1179 KCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECLQILRA 1228
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTG 370
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
718-1006 |
1.14e-115 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 362.04 E-value: 1.14e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 718 CIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDV 797
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 798 SQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIK 877
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 878 LWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSND 957
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 17131893 958 KTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006
Cdd:cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
634-922 |
7.04e-114 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 357.42 E-value: 7.04e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 634 SCCVFTETLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSV 713
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 714 RDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIK 793
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 794 LWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGD 873
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 17131893 874 RTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWN 922
Cdd:cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
760-1090 |
4.38e-113 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 355.10 E-value: 4.38e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 760 CLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNY 839
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 840 HTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGqtlacvsldqsvr 919
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG------------- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 920 lwncrtgqclkawygntdwalpvafspdrQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTD 999
Cdd:cd00200 148 -----------------------------TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1000 SSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLAS 1079
Cdd:cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
330
....*....|.
gi 17131893 1080 ASADQSVRLWD 1090
Cdd:cd00200 279 GSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
681-964 |
1.26e-110 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 348.56 E-value: 1.26e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 681 RGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTC 760
Cdd:cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 761 LQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYH 840
Cdd:cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 841 TGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRL 920
Cdd:cd00200 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 17131893 921 WNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWD 964
Cdd:cd00200 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
928-1216 |
9.29e-110 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 346.24 E-value: 9.29e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 928 CLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI 1007
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1008 STGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1088 LWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHD 1167
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 17131893 1168 QTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Cdd:cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
886-1174 |
1.07e-107 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 340.85 E-value: 1.07e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 886 CIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDW 965
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 966 QTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVK 1045
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1046 LWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTD 1125
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 17131893 1126 QTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWD 1174
Cdd:cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
971-1228 |
4.18e-90 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 292.70 E-value: 4.18e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 971 ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIS 1050
Cdd:cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1051 TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI 1130
Cdd:cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1131 WDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQ 1210
Cdd:cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241
|
250
....*....|....*...
gi 17131893 1211 TVRIWNVKTGECLQILRA 1228
Cdd:cd00200 242 TIRVWDLRTGECVQTLSG 259
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
1012-1230 |
1.12e-77 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 258.03 E-value: 1.12e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1012 CFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDC 1091
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1092 CTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 17131893 1172 IWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECLQILRAKR 1230
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
964-1216 |
1.65e-18 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 91.69 E-value: 1.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 964 DWQTGKYISSleghTDFIYGIAFSPDSQTLASASTDSSVRLWnistgQCFQILLEHTDWVYAVV-FHPQGKI-------- 1034
Cdd:PLN00181 473 DLKQGDLLNS----SNLVCAIGFDRDGEFFATAGVNKKIKIF-----ECESIIKDGRDIHYPVVeLASRSKLsgicwnsy 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1035 ----IATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYS 1109
Cdd:PLN00181 544 iksqVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1110 AIFSPNGEIIATCSTDQTVKIWDWQQGKC-LKTLTGHTNWVFDIAFSpDGKILASASHDQTVRIWD-------VNTGKCH 1181
Cdd:PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLpLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDlsmsisgINETPLH 702
|
250 260 270
....*....|....*....|....*....|....*
gi 17131893 1182 HIcIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Cdd:PLN00181 703 SF-MGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
729-1004 |
3.22e-17 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 87.45 E-value: 3.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 729 VFSVAFHPDGETLASASGDKTIKLWD----IQDGTCLQ----TLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQG 800
Cdd:PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFEcesiIKDGRDIHypvvELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 801 KCLRTLKSHTGWVRSVAF-SADGQTLASGSGDRTIKIWNYHTGECLKTyIGHTNSVYSIAYSPDS-KILVSGSGDRTIKL 878
Cdd:PLN00181 566 QLVTEMKEHEKRVWSIDYsSADPTLLASGSDDGSVKLWSINQGVSIGT-IKTKANICCVQFPSESgRSLAFGSADHKVYY 644
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 879 WDCQT-HICIKTLHGHTNEVCSVAFSpDGQTLACVSLDQSVRLWNCRTGQC------LKAWYGNTDWALPVAFSPDRQIL 951
Cdd:PLN00181 645 YDLRNpKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISginetpLHSFMGHTNVKNFVGLSVSDGYI 723
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17131893 952 ASGSNDKTVKLWD-----------WQTGKYISSLE--GHTDFIYGIAFSPDSQTLASASTDSSVRL 1004
Cdd:PLN00181 724 ATGSETNEVFVYHkafpmpvlsykFKTIDPVSGLEvdDASQFISSVCWRGQSSTLVAANSTGNIKI 789
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
946-1132 |
3.28e-17 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 86.49 E-value: 3.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 946 PDRQIL---ASGS----------NDKTVKLwDWQT------------GKYISS---LEGHTDFIYGIAFSP-DSQTLASA 996
Cdd:PTZ00421 16 PDRHFLnvtPSTAlwdcsntiacNDRFIAV-PWQQlgstavlkhtdyGKLASNppiLLGQEGPIIDVAFNPfDPQKLFTA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 997 STDSSVRLWNIS----TGQCFQILLE---HTDWVYAVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEHSDKILGM 1068
Cdd:PTZ00421 95 SEDGTIMGWGIPeeglTQNISDPIVHlqgHTKKVGIVSFHPSAMnVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17131893 1069 AWSPDGQLLASASADQSVRLWDCCTGRCVGILRGH-SNRVYSAIFSPNGEIIAT--CSTDQT--VKIWD 1132
Cdd:PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHaSAKSQRCLWAKRKDLIITlgCSKSQQrqIMLWD 243
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
644-871 |
1.46e-16 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 85.14 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 644 NILSA-AFSPEGQLLATCDTDCHVRVWEVKS------------------GKLLLICrghsnWVRFVvfspdGEILASCGA 704
Cdd:PLN00181 484 NLVCAiGFDRDGEFFATAGVNKKIKIFECESiikdgrdihypvvelasrSKLSGIC-----WNSYI-----KSQVASSNF 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 705 DENVKLWSVRDGVCIKTLTGHEHEVFSVAF-HPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDwVRCVAFSPD-GNT 782
Cdd:PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYsSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSEsGRS 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 783 LASSAADHTIKLWDVSQGKC-LRTLKSHTGWVRSVAFsADGQTLASGSGDRTIKIWNYHTGEC------LKTYIGHTNSV 855
Cdd:PLN00181 633 LAFGSADHKVYYYDLRNPKLpLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISginetpLHSFMGHTNVK 711
|
250
....*....|....*.
gi 17131893 856 YSIAYSPDSKILVSGS 871
Cdd:PLN00181 712 NFVGLSVSDGYIATGS 727
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
722-880 |
1.49e-14 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 78.01 E-value: 1.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 722 LTGHEHEVFSVAFHP-DGETLASASGDKTIKLWDI-QDG------TCLQTLTGHTDWVRCVAFSPDG-NTLASSAADHTI 792
Cdd:PTZ00421 71 LLGQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIpEEGltqnisDPIVHLQGHTKKVGIVSFHPSAmNVLASAGADMVV 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 793 KLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILV---- 868
Cdd:PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIitlg 230
|
170
....*....|...
gi 17131893 869 -SGSGDRTIKLWD 880
Cdd:PTZ00421 231 cSKSQQRQIMLWD 243
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
1016-1217 |
3.25e-14 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 77.82 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1016 LLEHTDWVYAVVFHPQGKIIATGSADCTVKLWnistgQCLKTLSEHSD------------KILGMAW-SPDGQLLASASA 1082
Cdd:PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIF-----ECESIIKDGRDihypvvelasrsKLSGICWnSYIKSQVASSNF 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1083 DQSVRLWDCCTGRCVGILRGHSNRVYSA-IFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNwVFDIAFSPD-GKI 1160
Cdd:PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIdYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSEsGRS 632
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 17131893 1161 LASASHDQTVRIWDVNTGKCHhIC--IGHTHLVSSVAFSpDGEVVASGSQDQTVRIWNV 1217
Cdd:PLN00181 633 LAFGSADHKVYYYDLRNPKLP-LCtmIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
21-880 |
1.92e-13 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 75.23 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 21 REIVATLKASPQGLARIKQARSDRGWSVDDFRWLELASEILGVCWQENGVLAAGISEGTWKRFLAGKQAINAEAFKAYCQ 100
Cdd:COG5635 35 LALVALGLALLALLDLLLADLGALLALVSRSALSAAALLARALSALLLVLLLLESLLLLLLLLLLLAEALLALLELAALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 101 VLGLNWEEVQEGGRTKERKDTGTSRQEKFLSSSHPHtdWGEAPDVSIFYGRSEELDTVKRW-VTQENCRLITLLGMGGIG 179
Cdd:COG5635 115 KAVLLSLSGGSDLVLLLSESDLLLALLILLLDADGL--LVSLDDLYVPLNLLERIESLKRLeLLEAKKKRLLILGEPGSG 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 180 KTTLSVKLAQEIINSekiYLSQSPEYIIW---RSLRNAPPVEDILAEliqflsgqqetNLSNHLQGRISLLLKNLRSSRC 256
Cdd:COG5635 193 KTTLLRYLALELAER---YLDAEDPIPILielRDLAEEASLEDLLAE-----------ALEKRGGEPEDALERLLRNGRL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 257 LIILDNAESILQAGDRNGRYRAgcegygqfLQCIAETSHQSCLILTSRekPQGlakYEGDSLP----VRSLPLTGLQeqe 332
Cdd:COG5635 259 LLLLDGLDEVPDEADRDEVLNQ--------LRRFLERYPKARVIITSR--PEG---YDSSELEgfevLELAPLSDEQ--- 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 333 gRELFnVKGKFAASCDQWQVL---------ISRYGGNPLALKIVASSIRD----------FFDGDVSQFLEVSqqgtfif 393
Cdd:COG5635 323 -IEEF-LKKWFEATERKAERLlealeenpeLRELARNPLLLTLLALLLRErgelpdtraeLYEQFVELLLERW------- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 394 DDIRDLLDQqfQRLTTLE-REIMYWLAI-----NREPVTLAELQADFVANIPPRELLES-LSSLQRRS--LIEKSAGGF- 463
Cdd:COG5635 394 DEQRGLTIY--RELSREElRELLSELALamqenGRTEFAREELEEILREYLGRRKDAEAlLDELLLRTglLVERGEGRYs 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 464 -----------------TQQPVVMEYVSNH------------LIEQVCEEMREWGLVRSRGAEEQRSRGEKIHTQYKLNA 514
Cdd:COG5635 472 fahrsfqeylaaralveELDEELLELLAEHledprwrevlllLAGLLDDVKQIKELIDALLARDDAAALALAAALLLALL 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 515 ALPLTALSTPLFTTHALIKAQAKDYVRESQISLILQPLINQLITEFGSLENISNCLVHILSRLRGKSPQETGYAGGNVLN 594
Cdd:COG5635 552 LALALLALLALLLLLRLLLALLALLLLALLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLLALALLLALLLLLLLL 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 595 LLHHAQVDLSGYDFSGLTVWQAYLQGVNLHDvDFANSDLSCCVFTETLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSG 674
Cdd:COG5635 632 LLAELLLLALLALVLLSLLLASRLLLITLLL-LAAASAALLLLLLLLLAELLLALLALASLLLLLLLALALALALLLLAV 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 675 KLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWD 754
Cdd:COG5635 711 LLAAALDLLLLLVLLLALLLVLALALSLLLLALALLLAGALLLESSALLAVLLASLLLALLLLSLLLLLVLLLALALLAS 790
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 755 IQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTI 834
Cdd:COG5635 791 LLLALLLLILLLVLLGSLLLLRLLDDLALLLLLALAAARLLLSSLALVALELARASLGASLVLLALLLATLLLLLLLLLA 870
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 17131893 835 KIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWD 880
Cdd:COG5635 871 LALALLSLLSLSSLALLSLLGLLLALSLLALLLLSLSLALAALLLA 916
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
754-1006 |
3.27e-13 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 74.35 E-value: 3.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 754 DIQDGTCLQTltghTDWVRCVAFSPDGNTLASSAADHTIKLWD----VSQGKCL---------RTLKSHTGWVRSVAfsa 820
Cdd:PLN00181 473 DLKQGDLLNS----SNLVCAIGFDRDGEFFATAGVNKKIKIFEcesiIKDGRDIhypvvelasRSKLSGICWNSYIK--- 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 821 dgQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSP-DSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNeVCS 899
Cdd:PLN00181 546 --SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICC 622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 900 VAFSPD-GQTLACVSLDQSVRLWNCRTGQC-LKAWYGNTDWALPVAFSpDRQILASGSNDKTVKLWDWQTGKY------I 971
Cdd:PLN00181 623 VQFPSEsGRSLAFGSADHKVYYYDLRNPKLpLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISginetpL 701
|
250 260 270
....*....|....*....|....*....|....*
gi 17131893 972 SSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006
Cdd:PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
168-462 |
3.93e-13 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 74.28 E-value: 3.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 168 RLITLLGMGGIGKTTLSVKLAQEIinsekiyLSQSPEYIIWRSLRNAPPVEDILAELIQFLSGQQETNlsnhlQGRISLL 247
Cdd:COG3903 177 RLVTLTGPGGVGKTRLALEVAHRL-------ADRFPDGVWFVDLAGVTDPALVLAAVARALGVRDAPG-----RDPAARL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 248 LKNLRSSRCLIILDNAESILQA-GDRNGRYRAGCEGygqflqciaetshqsCLIL-TSREkPQGLAkyeGDS-LPVRSLP 324
Cdd:COG3903 245 RAALADRRLLLVLDNCEHVVDAaAALVRPLLPAAPG---------------LRVLaTSRE-PLGLP---GERvLPLPPLA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 325 L----TGLQEQEGRELF-----NVKGKFAASCDQWQV---LISRYGGNPLALKIVASSIRDFfdgDVSQFLE-------- 384
Cdd:COG3903 306 VpppgAEALASEAVALFveragAARPGFALDAAEAAAvaeICRRLDGLPLAIELAAARLRTL---SLAELAArlddrlrl 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 385 --------VSQQGTfifddIRDLLDQQFQRLTTLEREIMYWLAINREPVTLAELQAdFVANIPPRELLESLSSLQRRSLI 456
Cdd:COG3903 383 ltggrrdaPPRHRT-----LRAALDWSYDLLSPAERRLLRRLSVFPGGFTLEAAEA-VCGGDGPADVLDLLAALVDKSLL 456
|
....*.
gi 17131893 457 EKSAGG 462
Cdd:COG3903 457 EVEGGG 462
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1135-1174 |
1.66e-12 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 62.71 E-value: 1.66e-12
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 1135 QGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWD 1174
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
757-796 |
4.58e-12 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 61.56 E-value: 4.58e-12
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 757 DGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWD 796
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
758-796 |
7.15e-12 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 60.82 E-value: 7.15e-12
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 758 GTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWD 796
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1136-1174 |
7.80e-12 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 60.82 E-value: 7.80e-12
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 1136 GKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWD 1174
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
799-838 |
1.75e-11 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 60.02 E-value: 1.75e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 799 QGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWN 838
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
841-880 |
2.02e-11 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 59.63 E-value: 2.02e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 841 TGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWD 880
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
715-754 |
2.85e-11 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 59.25 E-value: 2.85e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 715 DGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWD 754
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
800-838 |
4.40e-11 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 58.90 E-value: 4.40e-11
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 800 GKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWN 838
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
842-880 |
7.31e-11 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 58.13 E-value: 7.31e-11
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 842 GECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWD 880
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1051-1090 |
9.66e-11 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 57.71 E-value: 9.66e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 1051 TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWD 1090
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
716-754 |
1.18e-10 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 57.36 E-value: 1.18e-10
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 716 GVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWD 754
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1093-1132 |
3.41e-10 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 56.17 E-value: 3.41e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 1093 TGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWD 1132
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
643-797 |
4.16e-10 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 63.76 E-value: 4.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 643 GNILSAAFSP-EGQLLATCDTDCHVRVWEVKSGKL-------LLICRGHSNWVRFVVFSPDGE-ILASCGADENVKLWSV 713
Cdd:PTZ00421 76 GPIIDVAFNPfDPQKLFTASEDGTIMGWGIPEEGLtqnisdpIVHLQGHTKKVGIVSFHPSAMnVLASAGADMVVNVWDV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 714 RDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGH--TDWVRCVaFSPDGNTL----ASSA 787
Cdd:PTZ00421 156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHasAKSQRCL-WAKRKDLIitlgCSKS 234
|
170
....*....|
gi 17131893 788 ADHTIKLWDV 797
Cdd:PTZ00421 235 QQRQIMLWDT 244
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
148-457 |
4.72e-10 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 64.49 E-value: 4.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 148 FYGRSEELDTVKRW---VTQENCRLITLLGMGGIGKTTLsvklAQEIINSekiyLSQSPEYIIW----RSLRNAP--PVE 218
Cdd:COG3899 289 LVGREAELAALLAAlerARAGRGELVLVSGEAGIGKSRL----VRELARR----ARARGGRVLRgkcdQLERGVPyaPLA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 219 DILAELIQFLSGQQETNLSNHLQGRISLLLKNLRSsrcLI-ILDNAESILQAGDRNGRYRAGcEGYGQFLQCIAET---- 293
Cdd:COG3899 361 QALRALLGQLPEDELAAWRARLLAALGANGRLLAD---LLpELELQPAPPELDPEEARNRLF-RALLRLLRALAAErplv 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 294 -------------------------SHQSCLILTSR--EKPQG------LAKYEGDSLPVRSLPLTGLQEQEGRELfnVK 340
Cdd:COG3899 437 lvlddlhwadpaslellefllrrlrDLPLLLVGTYRpeEVPPAhplrllLAELRRAGAGVTRLELGPLSREEVAAL--VA 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 341 GkfAASCDQW-----QVLISRYGGNPLALKIVASSIRD----FFDGDVSQFLEVSQQGTfIFDDIRDLLDQQFQRLTTLE 411
Cdd:COG3899 515 D--LLGAAELpaelaELLVERTGGNPFFLEELLRALLEegllRFDGGGWRWDAALAALA-LPDTVVDLLAARLDRLPPAA 591
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 17131893 412 REIMYWLAINREPVTLAELQAdfVANIPPRELLESLSSLQRRSLIE 457
Cdd:COG3899 592 RRVLRLAAVLGRRFDLELLAA--VLGLSEAELAAALEELVAAGLLV 635
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1177-1216 |
5.90e-10 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 55.40 E-value: 5.90e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 1177 TGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
967-1006 |
1.37e-09 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 54.63 E-value: 1.37e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 967 TGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
883-922 |
1.75e-09 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 54.24 E-value: 1.75e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 883 THICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWN 922
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1052-1090 |
1.81e-09 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 54.27 E-value: 1.81e-09
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 1052 GQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWD 1090
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
778-909 |
2.30e-09 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 59.32 E-value: 2.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 778 PDGNTL-ASSAADHTIKLWDVSQGKCLRTLKSHTGWvRSVAFSADGQTL-ASGSGDRTIKIWNYHTGECLKTyIGHTNSV 855
Cdd:COG3391 77 ADGRRLyVANSGSGRVSVIDLATGKVVATIPVGGGP-RGLAVDPDGGRLyVADSGNGRVSVIDTATGKVVAT-IPVGAGP 154
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 17131893 856 YSIAYSPDSK-ILVSGSGDRTI----KLWDCQTHICIKTLHGHtNEVCSVAFSPDGQTL 909
Cdd:COG3391 155 HGIAVDPDGKrLYVANSGSNTVsvivSVIDTATGKVVATIPVG-GGPVGVAVSPDGRRL 212
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
1106-1225 |
2.70e-09 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 61.98 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1106 RVYSAIFSPNGEIIATCStDQTvKIWD-WQQ----GKCLKTLT-GHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGK 1179
Cdd:COG4946 344 RERLPAWSPDGKSIAYFS-DAS-GEYElYIApadgSGEPKQLTlGDLGRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGK 421
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 17131893 1180 CHHICIG-HTHLVSSVAFSPDGEVVA----SGSQDQTVRIWNVKTGECLQI 1225
Cdd:COG4946 422 VRKVDTDgYGDGISDLAWSPDSKWLAyskpGPNQLSQIFLYDVETGKTVQL 472
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1094-1132 |
2.86e-09 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 53.50 E-value: 2.86e-09
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 1094 GRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWD 1132
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1009-1048 |
3.02e-09 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 53.47 E-value: 3.02e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 1009 TGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWN 1048
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1178-1216 |
4.40e-09 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 53.12 E-value: 4.40e-09
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
688-822 |
6.42e-09 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 60.44 E-value: 6.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 688 RFVVFSPDGE-ILASCGADENVKLW--SVRDGVCIKTLT-GHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTcLQT 763
Cdd:COG4946 346 RLPAWSPDGKsIAYFSDASGEYELYiaPADGSGEPKQLTlGDLGRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGK-VRK 424
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17131893 764 LT--GHTDWVRCVAFSPDGNTLASSAADHT----IKLWDVSQGKcLRTLKSHTGWVRSVAFSADG 822
Cdd:COG4946 425 VDtdGYGDGISDLAWSPDSKWLAYSKPGPNqlsqIFLYDVETGK-TVQLTDGRYDDGSPAFSPDG 488
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
886-922 |
1.13e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 51.96 E-value: 1.13e-08
10 20 30
....*....|....*....|....*....|....*..
gi 17131893 886 CIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWN 922
Cdd:pfam00400 3 LLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
968-1006 |
1.89e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 51.19 E-value: 1.89e-08
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 968 GKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1010-1048 |
1.99e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 51.19 E-value: 1.99e-08
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 1010 GQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWN 1048
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
1065-1189 |
2.45e-08 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 57.98 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1065 ILGMAWSP-DGQLLASASADQSVRLWDC--------CTGRCVGiLRGHSNRVYSAIFSPNGE-IIATCSTDQTVKIWDWQ 1134
Cdd:PTZ00421 78 IIDVAFNPfDPQKLFTASEDGTIMGWGIpeegltqnISDPIVH-LQGHTKKVGIVSFHPSAMnVLASAGADMVVNVWDVE 156
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 17131893 1135 QGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKChhICIGHTH 1189
Cdd:PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI--VSSVEAH 209
|
|
| COG1672 |
COG1672 |
Predicted ATPase, archaeal AAA+ ATPase superfamily [General function prediction only]; |
148-458 |
3.08e-08 |
|
Predicted ATPase, archaeal AAA+ ATPase superfamily [General function prediction only];
Pssm-ID: 441278 [Multi-domain] Cd Length: 324 Bit Score: 56.85 E-value: 3.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 148 FYGRSEELDTVKRWVTQENCRLITLLGMGGIGKTTlsvkLAQEIINsEKIYLsqspeYIIWRSLRNAPPVEDILAELIQF 227
Cdd:COG1672 2 FFDREEELEELEKLYESDGGELVVVYGRRRVGKTS----LIKEFLK-EKPAI-----YFDAREESERESLRDFSEALAEA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 228 LSGQQETNLSNHLQGRISLLLKNLRSSRCLIILDNA----------ESILQAG-DRNGRyragcegygqflqciaetSHQ 296
Cdd:COG1672 72 LGDPLSKKEFESWEEAFEYLAELAEGKRLVIVIDEFqylvkldpslLSILQYLwDELLS------------------DSN 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 297 SCLILTSREkpQGL--AKYEGDSLP-----VRSLPLTGLQEQEGRELFnvKGKFAASCDQWQVLISRYGGNPLALKIVAS 369
Cdd:COG1672 134 VSLILCGSS--IGMmeELLLDYKSPlygrrTGEIKLKPFSFEESKEFL--PEGFEYSEEELEEAYSVLGGIPGYLTLFGN 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 370 SIRDFFDGDVSQFLEvsqQGTFIFDDIRDLLdQQFQRLTTLEREIMYwlAINREPVTLAELqADFVaNIPPRELLESLSS 449
Cdd:COG1672 210 EGKSLEENIEELLLS---PTSLLYEEPENLL-REELREPARYFSILK--AIASGATRLSEI-ASAL-GISSSSLSRYLKN 281
|
....*....
gi 17131893 450 LQRRSLIEK 458
Cdd:COG1672 282 LIDLGIIEK 290
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
694-842 |
7.16e-08 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 54.70 E-value: 7.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 694 PDGEIL-ASCGADENVKLWSVRDGVCIKTLTGHEHeVFSVAFHPDGETL-ASASGDKTIKLWDIQDGTCLQTL-TGhtDW 770
Cdd:COG3391 77 ADGRRLyVANSGSGRVSVIDLATGKVVATIPVGGG-PRGLAVDPDGGRLyVADSGNGRVSVIDTATGKVVATIpVG--AG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 771 VRCVAFSPDGNTL-ASSAADHTI----KLWDVSQGKCLRTLKSHTGWVrSVAFSADGQTL--------ASGSGDRTIKIW 837
Cdd:COG3391 154 PHGIAVDPDGKRLyVANSGSNTVsvivSVIDTATGKVVATIPVGGGPV-GVAVSPDGRRLyvanrgsnTSNGGSNTVSVI 232
|
....*
gi 17131893 838 NYHTG 842
Cdd:COG3391 233 DLATL 237
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
1099-1214 |
7.33e-08 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 56.44 E-value: 7.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1099 ILRGHSNRVYSAIFSP-NGEIIATCSTDQTVKIWDWQ----QGKCLKT---LTGHTNWVFDIAFSPDGK-ILASASHDQT 1169
Cdd:PTZ00421 70 ILLGQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIPeeglTQNISDPivhLQGHTKKVGIVSFHPSAMnVLASAGADMV 149
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 17131893 1170 VRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRI 1214
Cdd:PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
742-880 |
1.00e-07 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 52.75 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 742 ASASGDKTIKLWDIQDGTcLQTLTGHTDWVRCVAFSPDGNTLA-SSAADHTIKLW--DVSQGKcLRTLKSHTGWVRSVAF 818
Cdd:COG0823 5 LSRDGNSDIYVVDLDGGE-PRRLTNSPGIDTSPAWSPDGRRIAfTSDRGGGPQIYvvDADGGE-PRRLTFGGGYNASPSW 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17131893 819 SADGQTLA-SGSGDRTIKIW--NYHTGEclKTYIghTNSVYSIAYSPDSKILV---SGSGDRTIKLWD 880
Cdd:COG0823 83 SPDGKRLAfVSRSDGRFDIYvlDLDGGA--PRRL--TDGPGSPSWSPDGRRIVfssDRGGRPDLYVVD 146
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
673-712 |
1.35e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 48.85 E-value: 1.35e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 673 SGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWS 712
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
1069-1200 |
2.05e-07 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 55.82 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1069 AWSPDGQLLASAS-ADQSVRLWdccTGRCVG------ILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKT 1141
Cdd:COG4946 349 AWSPDGKSIAYFSdASGEYELY---IAPADGsgepkqLTLGDLGRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGKVRKV 425
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17131893 1142 LTGHTNW-VFDIAFSPDGKILA----SASHDQTVRIWDVNTGKchhicighTHLVS-------SVAFSPDG 1200
Cdd:COG4946 426 DTDGYGDgISDLAWSPDSKWLAyskpGPNQLSQIFLYDVETGK--------TVQLTdgryddgSPAFSPDG 488
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
925-964 |
2.90e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 48.08 E-value: 2.90e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17131893 925 TGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWD 964
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
596-787 |
3.42e-07 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 54.71 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 596 LHHAQVDLSGYD-FSGLtVWQAYLQG----VNLHDV----DFANSDLsCCVFTETLGNILSAAFSP-EGQLLATCDTDCH 665
Cdd:PLN00181 522 IHYPVVELASRSkLSGI-CWNSYIKSqvasSNFEGVvqvwDVARSQL-VTEMKEHEKRVWSIDYSSaDPTLLASGSDDGS 599
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 666 VRVWEVKSGKLLLICRGHSNwVRFVVFSPD-GEILASCGADENVKLWSVRD-GVCIKTLTGHEHEVFSVAFhPDGETLAS 743
Cdd:PLN00181 600 VKLWSINQGVSIGTIKTKAN-ICCVQFPSEsGRSLAFGSADHKVYYYDLRNpKLPLCTMIGHSKTVSYVRF-VDSSTLVS 677
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 17131893 744 ASGDKTIKLWDIQ------DGTCLQTLTGHTDWVRCVAFSPDGNTLASSA 787
Cdd:PLN00181 678 SSTDNTLKLWDLSmsisgiNETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727
|
|
| NHL |
cd05819 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
688-906 |
5.26e-07 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Pssm-ID: 271320 [Multi-domain] Cd Length: 269 Bit Score: 52.71 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 688 RFVVFSPDGEILASCGAdenvklwsvrDGVCIKTLtgheHEVFSVAFHPDGETLASASGDKTIKLWDIqDGTCLQTL--T 765
Cdd:cd05819 30 RIQVFDPDGNFITSFGS----------FGSGDGQF----NEPAGVAVDSDGNLYVADTGNHRIQKFDP-DGNFLASFggS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 766 GHTD----WVRCVAFSPDGNTLASSAADHTIKLWDvSQGKCLRTLKSHTGWV------RSVAFSADGQTLASGSGDRTIK 835
Cdd:cd05819 95 GDGDgefnGPRGIAVDSSGNIYVADTGNHRIQKFD-PDGEFLTTFGSGGSGPgqfngpTGVAVDSDGNIYVADTGNHRIQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 836 IWNYhTGECLKTY------IGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKT-----LHGHTNEVCSVAFSP 904
Cdd:cd05819 174 VFDP-DGNFLTTFgstgtgPGQFNYPTGIAVDSDGNIYVADSGNNRVQVFDPDGAGFGGNgnflgSDGQFNRPSGLAVDS 252
|
..
gi 17131893 905 DG 906
Cdd:cd05819 253 DG 254
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
811-964 |
5.36e-07 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 53.74 E-value: 5.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 811 GWVRSVAFSA-DGQTLASGSGDRTIKIWNYHTgECLKTYI--------GHTNSVYSIAYSPDSK-ILVSGSGDRTIKLWD 880
Cdd:PTZ00421 76 GPIIDVAFNPfDPQKLFTASEDGTIMGWGIPE-EGLTQNIsdpivhlqGHTKKVGIVSFHPSAMnVLASAGADMVVNVWD 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 881 CQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKA-------------WYGNTDWALPVAFSPD 947
Cdd:PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSveahasaksqrclWAKRKDLIITLGCSKS 234
|
170
....*....|....*..
gi 17131893 948 RQilasgsndKTVKLWD 964
Cdd:PTZ00421 235 QQ--------RQIMLWD 243
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
674-712 |
6.76e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 46.95 E-value: 6.76e-07
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 674 GKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWS 712
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
642-738 |
8.16e-07 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 53.50 E-value: 8.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 642 LGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLIcrGHSNW---VRFVVFSPDGEILA-SCGAD---ENVKLWSVR 714
Cdd:COG4946 388 LGRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGKVRKV--DTDGYgdgISDLAWSPDSKWLAySKPGPnqlSQIFLYDVE 465
|
90 100
....*....|....*....|....
gi 17131893 715 DGVcIKTLTGHEHEVFSVAFHPDG 738
Cdd:COG4946 466 TGK-TVQLTDGRYDDGSPAFSPDG 488
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
849-977 |
1.04e-06 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 52.97 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 849 IGHTNSVYSIAYSP-DSKILVSGSGDRTIKLWD---------CQTHICikTLHGHTNEVCSVAFSPDGQ-TLACVSLDQS 917
Cdd:PTZ00421 72 LGQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGipeegltqnISDPIV--HLQGHTKKVGIVSFHPSAMnVLASAGADMV 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 918 VRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGH 977
Cdd:PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
1065-1220 |
1.62e-06 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 50.85 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1065 ILGMAWSPDGQLL-ASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTL- 1142
Cdd:COG3391 70 ADGADAGADGRRLyVANSGSGRVSVIDLATGKVVATIPVGGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIp 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1143 TGhtNWVFDIAFSPDGKILASASHDQT-----VRIWDVNTGK-CHHICIGHThlVSSVAFSPDGEVV--------ASGSQ 1208
Cdd:COG3391 150 VG--AGPHGIAVDPDGKRLYVANSGSNtvsviVSVIDTATGKvVATIPVGGG--PVGVAVSPDGRRLyvanrgsnTSNGG 225
|
170
....*....|..
gi 17131893 1209 DQTVRIWNVKTG 1220
Cdd:COG3391 226 SNTVSVIDLATL 237
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
1068-1197 |
1.73e-06 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 47.27 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1068 MAWSPDGQLLASASADQSVRLWdcctgrcvgilRGHSNRVYSaifspngeiIATCSTDQTVKiwdwqqgkclktltghtn 1147
Cdd:pfam12894 1 MSWCPTMDLIALATEDGELLLH-----------RLNWQRVWT---------LSPDKEDLEVT------------------ 42
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 17131893 1148 wvfDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFS 1197
Cdd:pfam12894 43 ---SLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWG 89
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
985-1116 |
1.94e-06 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 52.35 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 985 AFSPDSQTLASASTDS-SVRLW--NISTGQCfQILLEHTD--WVYAVVFHPQGKIIATGSADCTVKLWNISTGQcLKTL- 1058
Cdd:COG4946 349 AWSPDGKSIAYFSDASgEYELYiaPADGSGE-PKQLTLGDlgRVFNPVWSPDGKKIAFTDNRGRLWVVDLASGK-VRKVd 426
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17131893 1059 -SEHSDKILGMAWSPDGQLLA----SASADQSVRLWDCCTGRCVGILRGHSNrVYSAIFSPNG 1116
Cdd:COG4946 427 tDGYGDGISDLAWSPDSKWLAyskpGPNQLSQIFLYDVETGKTVQLTDGRYD-DGSPAFSPDG 488
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
1142-1231 |
2.96e-06 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 51.49 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1142 LTGHTNWVFDIAFSP-DGKILASASHDQTVRIWDV--NTGKCHHI----CI--GHTHLVSSVAFSP-DGEVVASGSQDQT 1211
Cdd:PTZ00420 70 LKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIphNDESVKEIkdpqCIlkGHKKKISIIDWNPmNYYIMCSSGFDSF 149
|
90 100
....*....|....*....|.
gi 17131893 1212 VRIWNVKT-GECLQILRAKRL 1231
Cdd:PTZ00420 150 VNIWDIENeKRAFQINMPKKL 170
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
984-1071 |
5.28e-06 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 46.12 E-value: 5.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 984 IAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDW-VYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHS 1062
Cdd:pfam12894 1 MSWCPTMDLIALATEDGELLLHRLNWQRVWTLSPDKEDLeVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGS 80
|
....*....
gi 17131893 1063 DKILGMAWS 1071
Cdd:pfam12894 81 DLITCLGWG 89
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
698-838 |
5.97e-06 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 47.74 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 698 ILASCGADENVKLWSVR-DGVCIKTLTGHEHEVFSVAFHPDGETLA---SASGDKTIKLWDIqDGTCLQTLTGHTDWVRC 773
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDlDGGEPRRLTNSPGIDTSPAWSPDGRRIAftsDRGGGPQIYVVDA-DGGEPRRLTFGGGYNAS 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17131893 774 VAFSPDGNTLA-SSAADHTIKLW--DVSQGKcLRTLkshTGWVRSVAFSADGQTLA---SGSGDRTIKIWN 838
Cdd:COG0823 80 PSWSPDGKRLAfVSRSDGRFDIYvlDLDGGA-PRRL---TDGPGSPSWSPDGRRIVfssDRGGRPDLYVVD 146
|
|
| NB-ARC |
pfam00931 |
NB-ARC domain; |
155-376 |
1.24e-05 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 48.14 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 155 LDTVKRWVTQENCR-LITLLGMGGIGKTTLSVKlaqeiINSEKIYLSQSPEYIIWRSLRNAPPVEDILAELIQFLsGQQE 233
Cdd:pfam00931 5 VEKVIGKLSEKDEPgIVGIHGMGGVGKTTLAAQ-----IFNDFDEVEGHFDSVAWVVVSKTFTISTLQQTILQNL-GLSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 234 TNLSNHLQGRISLLLKN-LRSSRCLIILDNaesILQAGDrngrYRAGCEGYGQFlqciaetSHQSCLILTSREKpqGLAK 312
Cdd:pfam00931 79 DDWDNKEEGELARKIRRaLLTKRFLLVLDD---VWDEED----WDKIGIPLPDR-------ENGCRVLLTTRSE--EVAG 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17131893 313 YEGDslPVRSLPLTGLQEQEGRELFNVKGkFAASCDQWQVL-------ISRYGGNPLALKIVAS--SIRDFFD 376
Cdd:pfam00931 143 RVGG--PSDPHEVELLEPDEAWELFENKV-FPKTLGECELLedvakeiVEKCRGLPLALKVLGGllSCKKTVE 212
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
926-964 |
1.28e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 43.10 E-value: 1.28e-05
10 20 30
....*....|....*....|....*....|....*....
gi 17131893 926 GQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWD 964
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
1118-1221 |
1.98e-05 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 46.20 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1118 IIATCSTDQTVKIW--DWQQGKcLKTLTGHTNWVFDIAFSPDGKILA-SASHDQTVRIW--DVNTGKCHHICIGHTHlVS 1192
Cdd:COG0823 1 LAFTLSRDGNSDIYvvDLDGGE-PRRLTNSPGIDTSPAWSPDGRRIAfTSDRGGGPQIYvvDADGGEPRRLTFGGGY-NA 78
|
90 100 110
....*....|....*....|....*....|..
gi 17131893 1193 SVAFSPDGEVVA-SGSQDQTVRIW--NVKTGE 1221
Cdd:COG0823 79 SPSWSPDGKRLAfVSRSDGRFDIYvlDLDGGA 110
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
890-1004 |
2.02e-05 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 48.74 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 890 LHGHTNEVCSVAFSP-DGQTLACVSLDQSVRLWNC-------RTGQCLKAWYGNTDWALPVAFSPD-RQILASGSNDKTV 960
Cdd:PTZ00421 71 LLGQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSaMNVLASAGADMVV 150
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 17131893 961 KLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRL 1004
Cdd:PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
1136-1211 |
3.43e-05 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 47.37 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1136 GKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKC-----------------------HHICIGHTHLVS 1192
Cdd:pfam20426 114 GRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGRSsekrsrntqtefprkdhviaetpFHILCGHDDIIT 193
|
90
....*....|....*....
gi 17131893 1193 SVAFSPDGEVVASGSQDQT 1211
Cdd:pfam20426 194 CLYVSVELDIVISGSKDGT 212
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
1038-1204 |
5.47e-05 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 44.66 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1038 GSADctVKLWNISTGQcLKTLSEHSDKILGMAWSPDGQLLASASAdqsvrlwdcctgrcvgilRGHSNRVYsaIFSPNGe 1117
Cdd:COG0823 9 GNSD--IYVVDLDGGE-PRRLTNSPGIDTSPAWSPDGRRIAFTSD------------------RGGGPQIY--VVDADG- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1118 iiatcstdqtvkiwdwqqGKcLKTLTGHTNWVFDIAFSPDGKILASASH-DQTVRIW--DVNTGKCHHIcighTHLVSSV 1194
Cdd:COG0823 65 ------------------GE-PRRLTFGGGYNASPSWSPDGKRLAFVSRsDGRFDIYvlDLDGGAPRRL----TDGPGSP 121
|
170
....*....|
gi 17131893 1195 AFSPDGEVVA 1204
Cdd:COG0823 122 SWSPDGRRIV 131
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
1100-1179 |
6.33e-05 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 47.25 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1100 LRGHSNRVYSAIFSP-NGEIIATCSTDQTVKIWDWQQG----------KCLktLTGHTNWVFDIAFSP-DGKILASASHD 1167
Cdd:PTZ00420 70 LKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIPHNdesvkeikdpQCI--LKGHKKKISIIDWNPmNYYIMCSSGFD 147
|
90
....*....|..
gi 17131893 1168 QTVRIWDVNTGK 1179
Cdd:PTZ00420 148 SFVNIWDIENEK 159
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
771-819 |
6.37e-05 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 43.04 E-value: 6.37e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 17131893 771 VRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFS 819
Cdd:pfam12894 41 VTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWG 89
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
904-1087 |
7.52e-05 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 45.84 E-value: 7.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 904 PDGQTL-ACVSLDQSVRLWNCRTGQCLKAWYGNTDWAlPVAFSPD-RQILASGSNDKTVKLWDWQTGKYISSLEGHtDFI 981
Cdd:COG3391 77 ADGRRLyVANSGSGRVSVIDLATGKVVATIPVGGGPR-GLAVDPDgGRLYVADSGNGRVSVIDTATGKVVATIPVG-AGP 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 982 YGIAFSPDSQTLASASTDSsvrlwnistgqcfqilleHTDWVYAVVFHPQ-GKIIATgsadctvklwnISTGQclktlse 1060
Cdd:COG3391 155 HGIAVDPDGKRLYVANSGS------------------NTVSVIVSVIDTAtGKVVAT-----------IPVGG------- 198
|
170 180
....*....|....*....|....*....
gi 17131893 1061 hsdKILGMAWSPDGQLL--ASASADQSVR 1087
Cdd:COG3391 199 ---GPVGVAVSPDGRRLyvANRGSNTSNG 224
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
669-757 |
7.98e-05 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 46.87 E-value: 7.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 669 WEVKSGKLLLICR--------------GHSNWVRFVVFSP-DGEILASCGADENVKLWSVR----------DGVCIktLT 723
Cdd:PTZ00420 45 WEVEGGGLIGAIRlenqmrkppviklkGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIPhndesvkeikDPQCI--LK 122
|
90 100 110
....*....|....*....|....*....|....*
gi 17131893 724 GHEHEVFSVAFHPDGETLASASG-DKTIKLWDIQD 757
Cdd:PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGfDSFVNIWDIEN 157
|
|
| Ge1_WD40 |
pfam16529 |
WD40 region of Ge1, enhancer of mRNA-decapping protein; Ge1_WD40 is the N-terminal region of ... |
767-847 |
9.62e-05 |
|
WD40 region of Ge1, enhancer of mRNA-decapping protein; Ge1_WD40 is the N-terminal region of Ge-1 or enhancer of mRNA-decapping proteins. WD40-repeat regions are involved in protein-protein interactions.
Pssm-ID: 465162 [Multi-domain] Cd Length: 328 Bit Score: 45.91 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 767 HTDWVRCVAFSPDGNTLASSAADHTIKLW-----DVSQGKCLRTLKSHTGWVRSVAF-------SADGQ----TLASGSG 830
Cdd:pfam16529 185 EHSLLVDAAFSPDGTALATASLDGEVKFFqiylfDNRNPRCLHEWKPHDGKPLSSLFfldnhkkPPEVQfwrfAITGADN 264
|
90
....*....|....*..
gi 17131893 831 DRTIKIWNYHTGECLKT 847
Cdd:pfam16529 265 NSELKLWSCESWTCLQT 281
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
1067-1215 |
1.22e-04 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 45.27 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1067 GMAWSPDGQLLASASADQSVRLWDCCTGRcVGILRGHSNRVYSAIFSPNGEIIAtCSTDQTVKIWDWQQGKcLKTLTGHT 1146
Cdd:COG3386 12 GPVWDPDGRLYWVDIPGGRIHRYDPDGGA-VEVFAEPSGRPNGLAFDPDGRLLV-ADHGRGLVRFDPADGE-VTVLADEY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1147 NWVF----DIAFSPDGKILAS--ASHDQTVRIWDVN-TGKCHHIcigHTHLVSS--VAFSPDGE---VVASGSQdqtvRI 1214
Cdd:COG3386 89 GKPLnrpnDGVVDPDGRLYFTdmGEYLPTGALYRVDpDGSLRVL---ADGLTFPngIAFSPDGRtlyVADTGAG----RI 161
|
.
gi 17131893 1215 W 1215
Cdd:COG3386 162 Y 162
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
757-801 |
1.35e-04 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 45.83 E-value: 1.35e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 17131893 757 DGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGK 801
Cdd:pfam20426 113 DGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGR 157
|
|
| Ge1_WD40 |
pfam16529 |
WD40 region of Ge1, enhancer of mRNA-decapping protein; Ge1_WD40 is the N-terminal region of ... |
1145-1227 |
1.66e-04 |
|
WD40 region of Ge1, enhancer of mRNA-decapping protein; Ge1_WD40 is the N-terminal region of Ge-1 or enhancer of mRNA-decapping proteins. WD40-repeat regions are involved in protein-protein interactions.
Pssm-ID: 465162 [Multi-domain] Cd Length: 328 Bit Score: 45.14 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1145 HTNWVFDIAFSPDGKILASASHDQTVRIW-----DVNTGKCHHICIGHT-HLVSSVAF------SPDGE----VVASGSQ 1208
Cdd:pfam16529 185 EHSLLVDAAFSPDGTALATASLDGEVKFFqiylfDNRNPRCLHEWKPHDgKPLSSLFFldnhkkPPEVQfwrfAITGADN 264
|
90
....*....|....*....
gi 17131893 1209 DQTVRIWNVKTGECLQILR 1227
Cdd:pfam16529 265 NSELKLWSCESWTCLQTIR 283
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
712-867 |
1.69e-04 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 46.19 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 712 SVRDGVcIKTLTgHEHEV--FSVAFHPDGETLASAS---GDKTIKLWDIQDGTCLQTLTgHTDWVRCV--AFSPDGNTLA 784
Cdd:COG4946 328 PAEKGP-TRNLT-NTPGVreRLPAWSPDGKSIAYFSdasGEYELYIAPADGSGEPKQLT-LGDLGRVFnpVWSPDGKKIA 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 785 SSAADHTIKLWDVSQGKcLRTLKSHTGW--VRSVAFSADGQTLA----SGSGDRTIKIWNYHTGEclKTYIghTNSVY-- 856
Cdd:COG4946 405 FTDNRGRLWVVDLASGK-VRKVDTDGYGdgISDLAWSPDSKWLAyskpGPNQLSQIFLYDVETGK--TVQL--TDGRYdd 479
|
170
....*....|..
gi 17131893 857 -SIAYSPDSKIL 867
Cdd:COG4946 480 gSPAFSPDGKYL 491
|
|
| HTH_XRE |
cd00093 |
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
36-109 |
1.77e-04 |
|
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 40.61 E-value: 1.77e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17131893 36 RIKQARSDRGWSVDdfrwlELASEIlgvcwqengvlaaGISEGTWKRFLAGKQAINAEAFKAYCQVLGLNWEEV 109
Cdd:cd00093 3 RLKELRKEKGLTQE-----ELAEKL-------------GVSRSTISRIENGKRNPSLETLEKLAKALGVSLDEL 58
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
728-777 |
2.73e-04 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 41.11 E-value: 2.73e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 17131893 728 EVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFS 777
Cdd:pfam12894 40 EVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWG 89
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
693-811 |
2.75e-04 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 44.68 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 693 SPDGEILASCGADEN-VKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDG------------- 758
Cdd:pfam20426 90 TPSENFLISCGNWENsFQVISLNDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGrssekrsrntqte 169
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17131893 759 ----------TCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTG 811
Cdd:pfam20426 170 fprkdhviaeTPFHILCGHDDIITCLYVSVELDIVISGSKDGTCIFHTLREGRYVRSIRHPSG 232
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
1030-1097 |
4.11e-04 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 40.72 E-value: 4.11e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1030 PQGKIIATGSADCTVKLWNIStGQCLKTLS--EHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCV 1097
Cdd:pfam12894 5 PTMDLIALATEDGELLLHRLN-WQRVWTLSpdKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIV 73
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
1152-1230 |
4.63e-04 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 40.34 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1152 IAFSPDGKILASASHDQTV--------RIWDVNTGKchhicigHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECL 1223
Cdd:pfam12894 1 MSWCPTMDLIALATEDGELllhrlnwqRVWTLSPDK-------EDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIV 73
|
....*..
gi 17131893 1224 QILRAKR 1230
Cdd:pfam12894 74 HHFSAGS 80
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
168-304 |
5.64e-04 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 41.91 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 168 RLITLLGMGGIGKTTLSVKLAQEIINSekiYLSQSPEYIIWRSLRNAPPVEDILAeLIQFLSGQQETNLSNHLQGRISLL 247
Cdd:pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQG---KLPQGFDFVFFLPCRELSRSGNARS-LADLLFSQWPEPAAPVSEVWAVIL 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 17131893 248 lknLRSSRCLIILDNAESILQAgdrNGRYRAGCEGYGQFLQCIAETS-HQSCLILTSR 304
Cdd:pfam05729 77 ---ELPERLLLILDGLDELVSD---LGQLDGPCPVLTLLSSLLRKKLlPGASLLLTVR 128
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
637-670 |
5.73e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 38.45 E-value: 5.73e-04
10 20 30
....*....|....*....|....*....|....
gi 17131893 637 VFTETLGNILSAAFSPEGQLLATCDTDCHVRVWE 670
Cdd:smart00320 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| Ge1_WD40 |
pfam16529 |
WD40 region of Ge1, enhancer of mRNA-decapping protein; Ge1_WD40 is the N-terminal region of ... |
1060-1157 |
5.76e-04 |
|
WD40 region of Ge1, enhancer of mRNA-decapping protein; Ge1_WD40 is the N-terminal region of Ge-1 or enhancer of mRNA-decapping proteins. WD40-repeat regions are involved in protein-protein interactions.
Pssm-ID: 465162 [Multi-domain] Cd Length: 328 Bit Score: 43.60 E-value: 5.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1060 EHSDKILGMAWSPDGQLLASASADQSVRLW-----DCCTGRCVGILRGHSNRVYSAIF-------SPNGE----IIATCS 1123
Cdd:pfam16529 184 EEHSLLVDAAFSPDGTALATASLDGEVKFFqiylfDNRNPRCLHEWKPHDGKPLSSLFfldnhkkPPEVQfwrfAITGAD 263
|
90 100 110
....*....|....*....|....*....|....
gi 17131893 1124 TDQTVKIWDWQQGKCLKTltghtnwvfdIAFSPD 1157
Cdd:pfam16529 264 NNSELKLWSCESWTCLQT----------IRFVPD 287
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
639-755 |
5.91e-04 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 41.97 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 639 TETLGNILSAAFSPEGQLLA-TCDTDCHVRVW--EVKSGKLLLICRGhSNWVRFVVFSPDGEILA-SCGADENVKLWSVR 714
Cdd:COG0823 27 TNSPGIDTSPAWSPDGRRIAfTSDRGGGPQIYvvDADGGEPRRLTFG-GGYNASPSWSPDGKRLAfVSRSDGRFDIYVLD 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 17131893 715 -DGVCIKTLTgheHEVFSVAFHPDGETLA---SASGDKTIKLWDI 755
Cdd:COG0823 106 lDGGAPRRLT---DGPGSPSWSPDGRRIVfssDRGGRPDLYVVDL 147
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
148-264 |
7.48e-04 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 41.72 E-value: 7.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 148 FYGRSEELDTVK---RWVTQENCRLITLLGMGGIGKTTLsVKLAQEIINSEKIYLSQS------PEYIIWRSLRNAPPVE 218
Cdd:pfam13191 2 LVGREEELEQLLdalDRVRSGRPPSVLLTGEAGTGKTTL-LRELLRALERDGGYFLRGkcdenlPYSPLLEALTREGLLR 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17131893 219 DILAELIQFL--------------SGQQETNLSNHLQGRISLLLKNLRSSR--CLIILDNAE 264
Cdd:pfam13191 81 QLLDELESSLleawraallealapVPELPGDLAERLLDLLLRLLDLLARGErpLVLVLDDLQ 142
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
1142-1227 |
1.12e-03 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 42.96 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1142 LTGHTNWVFDIAFSP-DGKILASASHDQTVRIWDVNTGKCHHICI-------GHTHLVSSVAFSPDGE-VVASGSQDQTV 1212
Cdd:PTZ00421 71 LLGQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIPEEGLTQNISdpivhlqGHTKKVGIVSFHPSAMnVLASAGADMVV 150
|
90
....*....|....*
gi 17131893 1213 RIWNVKTGECLQILR 1227
Cdd:PTZ00421 151 NVWDVERGKAVEVIK 165
|
|
| HTH_XRE |
smart00530 |
Helix-turn-helix XRE-family like proteins; |
36-109 |
1.15e-03 |
|
Helix-turn-helix XRE-family like proteins;
Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 38.27 E-value: 1.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17131893 36 RIKQARSDRGWSVDdfrwlELASEIlgvcwqengvlaaGISEGTWKRFLAGKQAINAEAFKAYCQVLGLNWEEV 109
Cdd:smart00530 1 RLKELREEKGLTQE-----ELAEKL-------------GVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
1187-1217 |
1.28e-03 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 42.75 E-value: 1.28e-03
10 20 30
....*....|....*....|....*....|.
gi 17131893 1187 HTHLVSSVAFSPDGEVVASGSQDQTVRIWNV 1217
Cdd:pfam20426 123 HKDVVSCVAVTSDGSILATGSYDTTVMVWEV 153
|
|
| NHL_like_3 |
cd14956 |
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ... |
684-880 |
1.38e-03 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271326 [Multi-domain] Cd Length: 274 Bit Score: 42.27 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 684 SNWvRFVVFSPDGEILAscgadenvKLWSVRDGvciktlTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIqDGTCLQT 763
Cdd:cd14956 32 RNG-RIQVFDKDGTFLR--------RFGTTGDG------PGQFGRPRGLAVDKDGWLYVADYWGDRIQVFTL-TGELQTI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 764 ------LTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDvSQGKCLRTLKShTG-------WVRSVAFSADGQT-LASGS 829
Cdd:cd14956 96 ggssgsGPGQFNAPRGVAVDADGNLYVADFGNQRIQKFD-PDGSFLRQWGG-TGiepgsfnYPRGVAVDPDGTLyVADTY 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 17131893 830 GDRtIKIWNyHTGECLKTYIGHT------NSVYSIAYSPDSKILVSGSGDRTIKLWD 880
Cdd:cd14956 174 NDR-IQVFD-NDGAFLRKWGGRGtgpgqfNYPYGIAIDPDGNVFVADFGNNRIQKFT 228
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
850-922 |
1.42e-03 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 43.01 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 850 GHTNSVYSIAYSP-DSKILVSGSGDRTIKLWDCQTH----------ICIktLHGHTNEVCSVAFSPDGQTLACVS-LDQS 917
Cdd:PTZ00420 72 GHTSSILDLQFNPcFSEILASGSEDLTIRVWEIPHNdesvkeikdpQCI--LKGHKKKISIIDWNPMNYYIMCSSgFDSF 149
|
....*
gi 17131893 918 VRLWN 922
Cdd:PTZ00420 150 VNIWD 154
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
1016-1090 |
1.61e-03 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 42.63 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1016 LLEHTDWVYAVVFHP-QGKIIATGSADCTVKLWNI----------STGQCLktLSEHSDKILGMAWSP-DGQLLASASAD 1083
Cdd:PTZ00420 70 LKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIphndesvkeiKDPQCI--LKGHKKKISIIDWNPmNYYIMCSSGFD 147
|
....*..
gi 17131893 1084 QSVRLWD 1090
Cdd:PTZ00420 148 SFVNIWD 154
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
1066-1221 |
1.68e-03 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 41.93 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1066 LGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEI-IATCSTDQTVKIwDWQQGKcLKTLTG 1144
Cdd:COG4257 20 RDVAVDPDGAVWFTDQGGGRIGRLDPATGEFTEYPLGGGSGPHGIAVDPDGNLwFTDNGNNRIGRI-DPKTGE-ITTFAL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1145 HTNWV--FDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLV-SSVAFSPDGEVVASGSQDQTVRIWNVKTGE 1221
Cdd:COG4257 98 PGGGSnpHGIAFDPDGNLWFTDQGGNRIGRLDPATGEVTEFPLPTGGAGpYGIAVDPDGNLWVTDFGANAIGRIDPDTGT 177
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
934-1017 |
1.95e-03 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 42.24 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 934 GNTDWALPVAFSP-DRQILASGSNDKTVKLWDW----QTGKYISS----LEGHTDFIYGIAFSP-DSQTLASASTDSSVR 1003
Cdd:PTZ00420 72 GHTSSILDLQFNPcFSEILASGSEDLTIRVWEIphndESVKEIKDpqciLKGHKKKISIIDWNPmNYYIMCSSGFDSFVN 151
|
90
....*....|....*
gi 17131893 1004 LWNIST-GQCFQILL 1017
Cdd:PTZ00420 152 IWDIENeKRAFQINM 166
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
858-1000 |
2.33e-03 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 40.04 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 858 IAYSpdskilVSGSGDRTIKLWDCQTHIcIKTLHGHTNEVCSVAFSPDGQTLACVS---LDQSVRLWNCRTGQCLKAWYG 934
Cdd:COG0823 1 LAFT------LSRDGNSDIYVVDLDGGE-PRRLTNSPGIDTSPAWSPDGRRIAFTSdrgGGPQIYVVDADGGEPRRLTFG 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17131893 935 NTDWALPVaFSPD-RQILASGSNDKTVKLWdwqtgkyISSLEGH-----TDFIYGIAFSPDSQTLASASTDS 1000
Cdd:COG0823 74 GGYNASPS-WSPDgKRLAFVSRSDGRFDIY-------VLDLDGGaprrlTDGPGSPSWSPDGRRIVFSSDRG 137
|
|
| YjbI |
COG1357 |
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown]; |
594-641 |
3.29e-03 |
|
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
Pssm-ID: 440968 [Multi-domain] Cd Length: 178 Bit Score: 39.92 E-value: 3.29e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 17131893 594 NLLHHAQVDLSGYDFSGLTVWQAYLQGVNLHDVDFANSDLSCCVFTET 641
Cdd:COG1357 85 NLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGA 132
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
637-670 |
3.63e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 36.17 E-value: 3.63e-03
10 20 30
....*....|....*....|....*....|....
gi 17131893 637 VFTETLGNILSAAFSPEGQLLATCDTDCHVRVWE 670
Cdd:pfam00400 6 TLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
789-875 |
4.53e-03 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 40.83 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 789 DHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIW-------------NYHTGECLKTYI------ 849
Cdd:pfam20426 103 ENSFQVISLNDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWevlrgrssekrsrNTQTEFPRKDHViaetpf 182
|
90 100 110
....*....|....*....|....*....|
gi 17131893 850 ----GHTNSVYSIAYSPDSKILVSGSGDRT 875
Cdd:pfam20426 183 hilcGHDDIITCLYVSVELDIVISGSKDGT 212
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
982-1220 |
5.00e-03 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 40.39 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 982 YGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQcLKT--LS 1059
Cdd:COG4257 20 RDVAVDPDGAVWFTDQGGGRIGRLDPATGEFTEYPLGGGSGPHGIAVDPDGNLWFTDNGNNRIGRIDPKTGE-ITTfaLP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1060 EHSDKILGMAWSPDGQL-LASASADQSVRLwDCCTGRC-VGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGK 1137
Cdd:COG4257 99 GGGSNPHGIAFDPDGNLwFTDQGGNRIGRL-DPATGEVtEFPLPTGGAGPYGIAVDPDGNLWVTDFGANAIGRIDPDTGT 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 1138 cLKTLTGHT--NWVFDIAFSPDGKILASASHDQTVRIWDVNTGKC-HHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRI 1214
Cdd:COG4257 178 -LTEYALPTpgAGPRGLAVDPDGNLWVADTGSGRIGRFDPKTGTVtEYPLPGGGARPYGVAVDGDGRVWFAESGANRIVR 256
|
....*.
gi 17131893 1215 WNVKTG 1220
Cdd:COG4257 257 FDPDTE 262
|
|
| Pgl |
COG2706 |
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism]; |
647-783 |
6.02e-03 |
|
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
Pssm-ID: 442025 [Multi-domain] Cd Length: 352 Bit Score: 40.27 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 647 SAAFSPEGQLLATCD--TDChVRVWEV--KSGKLLLIcrghsNWV--------RFVVFSPDGEIL----------ASCGA 704
Cdd:COG2706 154 SVVFDPDGRFLYVPDlgTDR-IYVYRLdpATGKLPEP-----PEVslppgsgpRHLAFHPNGRFAyvineldstvSVYAY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17131893 705 DENVKLWSVRDGVciKTLTGHEHEVFS---VAFHPDGETL-ASASGDKTIKLWDIQDGTCLQTLTGHT----DWVRCVAF 776
Cdd:COG2706 228 DAATGTLTLIQTV--STLPEDFTGENWaadIHISPDGRFLyVSNRGHNSIAVFAIDADGGKLTLVGHVptggKWPRDFAI 305
|
....*..
gi 17131893 777 SPDGNTL 783
Cdd:COG2706 306 DPDGRFL 312
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
793-861 |
7.00e-03 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 37.26 E-value: 7.00e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17131893 793 KLWDVSQGKclrtlksHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYS 861
Cdd:pfam12894 28 RVWTLSPDK-------EDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWG 89
|
|
| |
