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Conserved domains on  [gi|1707765547|gb|QDP18121|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Chrotogonus sp. TAMUIC IGC OR284]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-168 8.67e-38

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 126.84  E-value: 8.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547   1 MMTTSNILNLNFTKLNHPMSMMFMIIIQTLLIGMMIGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFNLNIKLL 80
Cdd:MTH00166    4 LMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547  81 MISFLLLTSMFFMLSMTEFIFMNdfiknsdssetNLHFDITEMSMSLLKLYNYPNFLVTIMMMIYLFLALLAVVKITNIH 160
Cdd:MTH00166   84 ILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIF 152


                  ....*...
gi 1707765547 161 KGPIRKMN 168
Cdd:MTH00166  153 KGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-168 8.67e-38

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 126.84  E-value: 8.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547   1 MMTTSNILNLNFTKLNHPMSMMFMIIIQTLLIGMMIGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFNLNIKLL 80
Cdd:MTH00166    4 LMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547  81 MISFLLLTSMFFMLSMTEFIFMNdfiknsdssetNLHFDITEMSMSLLKLYNYPNFLVTIMMMIYLFLALLAVVKITNIH 160
Cdd:MTH00166   84 ILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIF 152


                  ....*...
gi 1707765547 161 KGPIRKMN 168
Cdd:MTH00166  153 KGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-168 8.67e-38

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 126.84  E-value: 8.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547   1 MMTTSNILNLNFTKLNHPMSMMFMIIIQTLLIGMMIGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFNLNIKLL 80
Cdd:MTH00166    4 LMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547  81 MISFLLLTSMFFMLSMTEFIFMNdfiknsdssetNLHFDITEMSMSLLKLYNYPNFLVTIMMMIYLFLALLAVVKITNIH 160
Cdd:MTH00166   84 ILFLLMLLLMLNNFIKNSEMSNF-----------NNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIF 152


                  ....*...
gi 1707765547 161 KGPIRKMN 168
Cdd:MTH00166  153 KGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-166 7.43e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 60.02  E-value: 7.43e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547   1 MMTTSNILNLNFTKLNHPMSMMFMIIIQTLLIGMMIgTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFNLNIKLL 80
Cdd:MTH00212    6 LLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLII-TMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKKYFK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547  81 MISFLLLTSMFFMLSMTEFIFMNDFIKNSdssetnlhfditEMSMSLLKLYNYPNFLVTIMMMIYLFLALLAVVKITNIH 160
Cdd:MTH00212   85 GFGMILISLNLYLLLMTLGSSNFSPMLNL------------KLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYY 152


                  ....*.
gi 1707765547 161 KGPIRK 166
Cdd:MTH00212  153 KGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-165 1.36e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 53.74  E-value: 1.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547   1 MMTTSNILNLNFTKLNHPMSMMFMIIIQTLLIGMMIGtLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFNLNIKLL 80
Cdd:MTH00152    6 LLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKFV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765547  81 MISFLLLTSMFFMLsmtefiFMNDFIKNSDSSETNLHFDITEMSMSLLKLYNYPNFLVTIMMMIYLFLALLAVVKITNIH 160
Cdd:MTH00152   85 FFSLTLFGFLGLFF------FFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYE 158


                  ....*
gi 1707765547 161 KGPIR 165
Cdd:MTH00152  159 EGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 42-63 5.37e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 35.89  E-value: 5.37e-03
                          10        20
                  ....*....|....*....|..
gi 1707765547  42 SFwLSYILFLTFLGGMLVLFIY 63
Cdd:MTH00138   49 SF-LSLVLFLIYLGGMLVVFAY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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