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Conserved domains on  [gi|1707765499|gb|QDP18077|]
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cytochrome b (mitochondrion) [Ochrophlegma sp. TAMUIC IGC OR279]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 681.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  12 FKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  92 FICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 172 DNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLCMMNPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQIMFWVMVT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1707765499 332 VVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 681.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  12 FKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  92 FICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 172 DNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLCMMNPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQIMFWVMVT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1707765499 332 VVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-364 1.30e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 351.79  E-value: 1.30e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  10 PLFKIVNNsFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGAS 89
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  90 MFFICIYLHVGRGIYYGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWG 167
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 168 GFAVDNATLNRFFTFH-FILPFIITAMAMMHLFFLHQTGSNNPLG----LNSNIEKIPFHPYFTFKDsISFIMMTsLLIM 242
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD-GFGFFVF-LGVF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 243 LCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:COG1290   256 ALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPveEPYILTGQILTIIYFLYFI 364
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.27e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.07  E-value: 1.27e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  10 PLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  90 MFFICIYLHVGRGIYYGSYI--YIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1707765499 168 GFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.74e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 235.74  E-value: 5.74e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  19 FIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  99 VGRGIYYGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1707765499 177 NRFFTFHFILPFIITAMAMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-340 3.32e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 238 SLLIMLCMMNPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTN-FRGI 316
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNP 123

                          90       100
                  ....*....|....*....|....
gi 1707765499 317 QFYPINQIMFWVMVTVVIlltWIG 340
Cdd:TIGR01156 124 FRRPVATTVFLFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 681.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  12 FKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  92 FICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 172 DNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLCMMNPYLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQIMFWVMVT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1707765499 332 VVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMN 366
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 615.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   1 MNKPLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWII 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  81 RTLHANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTE 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 161 LVQWVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 241 IMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMNVHISYLWNLII 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 602.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   1 MNKPLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWII 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  81 RTLHANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTE 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 161 LVQWVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 241 IMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYF-LYFIMNVHISYLWNLIIK 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFtILLILFPLLGALENKMLN 379
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 599.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   5 LRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  85 ANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 165 VWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLC 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 245 MMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1707765499 325 MFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIM 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00074
cytochrome b; Provisional
 1-373 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 592.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   1 MNKPLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWII 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  81 RTLHANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTE 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 161 LVQWVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 241 IMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMNVHISYLW 373
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWL 373
CYTB MTH00100
cytochrome b; Provisional
 4-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 591.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   4 PLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTL 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  84 HANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 164 WVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIML 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 244 CMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1707765499 324 IMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFI 364
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363
CYTB MTH00131
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 590.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   5 LRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  85 ANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 165 VWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLC 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 245 MMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQI 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1707765499 325 MFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFI 364
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 578.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   1 MNKPLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWII 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  81 RTLHANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTE 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 161 LVQWVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 241 IMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMNVHISYLWNLIIK 378
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00034
cytochrome b; Validated
 4-379 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 548.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   4 PLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTL 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  84 HANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 164 WVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIML 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 244 CMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1707765499 324 IMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIM-NVHISYLWNLIIKN 379
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLISYLENKLIFS 379
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 513.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   1 MNKPLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWII 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  81 RTLHANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTE 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 161 LVQWVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 241 IMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIMNVHISYLWNLIIK 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00053
cytochrome b; Provisional
 1-378 3.23e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 484.98  E-value: 3.23e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   1 MNKPLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWII 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  81 RTLHANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTE 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 161 LVQWVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 241 IMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYF-IMNVHISYLWNLIIK 378
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFlILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 4-365 5.45e-172

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 484.20  E-value: 5.45e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499   4 PLRLNQPLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTL 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  84 HANGASMFFICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 164 WVWGGFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIML 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 244 CMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1707765499 324 IMFWVMVTVVILLTWIGKRPVEEPYILTGQILTIIYFLYFIM 365
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00033
cytochrome b; Provisional
 17-375 4.51e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 388.53  E-value: 4.51e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  17 NSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFFICIY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  97 LHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 177 NRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLCMMN--PYLLGDP 254
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 255 DNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQIMFWVMVTVVI 334
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1707765499 335 LLTWIGKRPV-EEPYILTGQILTIIYFLYFIMNVH-ISYLWNL 375
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPlLGYLSNL 375
CYTB MTH00086
cytochrome b; Provisional
 13-365 9.75e-125

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 363.49  E-value: 9.75e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  13 KIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  93 ICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 173 NATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTsLLIMLCMMNPYLLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 253 DPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNktNFRGIqFYPINQIMFWVMVTV 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN--NYTSC-LNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1707765499 333 VILLTWIGKRPVEEPYILTGQILTIIYFLYFIM 365
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-364 1.30e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 351.79  E-value: 1.30e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  10 PLFKIVNNsFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGAS 89
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  90 MFFICIYLHVGRGIYYGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWG 167
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 168 GFAVDNATLNRFFTFH-FILPFIITAMAMMHLFFLHQTGSNNPLG----LNSNIEKIPFHPYFTFKDsISFIMMTsLLIM 242
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD-GFGFFVF-LGVF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 243 LCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSISILMILPLYNKTNFRGIQFYP 320
Cdd:COG1290   256 ALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1707765499 321 INQIMFWVMVTVVILLTWIGKRPveEPYILTGQILTIIYFLYFI 364
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.27e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 258.07  E-value: 1.27e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  10 PLFKIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  90 MFFICIYLHVGRGIYYGSYI--YIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1707765499 168 GFAVDNATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-358 6.60e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.14  E-value: 6.60e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  13 KIVNNSFIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFF 92
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  93 ICIYLHVGRGIYYGSYIYIHTWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVD 172
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 173 NATLNRFFTFHFILPFIITAMAMMHLFFLHQTGSNNPLGLNSNI-EKIPFHPYFTFKDSISFIMMTSLLIMLCMMNPYLL 251
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 252 GDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLFMSISILMILPLYNKTNFRGIqfypINQIMFWVMVT 331
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317

                         330       340
                  ....*....|....*....|....*..
gi 1707765499 332 VVILLTWIGKRPVEEPYILTGQILTII 358
Cdd:MTH00046  318 LFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 5.74e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 235.74  E-value: 5.74e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  19 FIDLPTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  99 VGRGIYYGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1707765499 177 NRFFTFHFILPFIITAMAMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 3.33e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 155.11  E-value: 3.33e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 208 NPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLCMMNPYLLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1707765499 288 KLGGVIALFMSISILMILPLYNKTNFRGiQFYPINQIMFWVMVTVVILLTWIGKRPVEEPYILTGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 9.17e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 154.71  E-value: 9.17e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  89 SMFFICIYLHVGRGIYYGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 167 GGFAVDNATLNRFFTFHF-ILPFIITAMAMMHLFFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDSISFIMMTSLLIMLCM 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1707765499 246 MNPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.84e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.77  E-value: 1.84e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTNFRGIQFYPINQIMFWVMVTVVILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1707765499 339 IGKRPVEEPYILTGQILTIIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 1.35e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.14  E-value: 1.35e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  23 PTPINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFFICIYLHVGRG 102
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 103 IYYGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFF 180
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1707765499 181 TFH-FILPFIITAMAMMHLFFLHQTGSNNPL 210
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 1.50e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 107.88  E-value: 1.50e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499  25 PINISFWWNYGSLLGLCLIIQIFTGLFLAMHYTSNIEFAFNSVVHICRDVNNGWIIRTLHANGASMFFICIYLHVGRGIY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 105 YGSYIYIH--TWMIGTTILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLNRFFTF 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1707765499 183 H-FILPFIITAMAMMHLFFLHQTGSNNPL 210
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 238-350 1.47e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.42  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 238 SLLIMLCMMNPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTN-FRGI 316
Cdd:COG5679    50 ALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNkFQNP 124

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1707765499 317 QFYPINQIMFWVMVTVVILLTWIGKRPVEEPYIL 350
Cdd:COG5679   125 FRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 238-336 1.23e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.55  E-value: 1.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 238 SLLIMLCMMNPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILP-LYNKTNFRGI 316
Cdd:CHL00058   49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPfLENVNKFQNP 123

                          90       100
                  ....*....|....*....|
gi 1707765499 317 QFYPINQIMFWVMVTVVILL 336
Cdd:CHL00058  124 FRRPVATTVFLIGTAVALWL 143
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-340 3.32e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765499 238 SLLIMLCMMNPYLLGDPdnfipANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPLYNKTN-FRGI 316
Cdd:TIGR01156  49 ACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNP 123

                          90       100
                  ....*....|....*....|....
gi 1707765499 317 QFYPINQIMFWVMVTVVIlltWIG 340
Cdd:TIGR01156 124 FRRPVATTVFLFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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