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Conserved domains on  [gi|1705366487|ref|WP_142693610|]
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tetratricopeptide repeat protein [Campylobacter troglodytis]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-298 1.53e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 1.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  75 KESLRFDMEKIDGMIQKANGLYLRGEREEALKIYEQISLYSE--ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTV 152
Cdd:COG2956    32 EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 153 AAINAAVCALHLNDLAK-FNYYLDLayvhLPNEGGSKLFNYYLSLINYYKGFYPEALQMFQQTnNEIYSDS--AKYLGAK 229
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKaIEVLERL----LKLGPENAHAYCELAELYLEQGDYDEAIEALEKA-LKLDPDCarALLLLAE 186

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1705366487 230 IYAKMGLNTRALENL-----QTQESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDLKTG 298
Cdd:COG2956   187 LYLEQGDYEEAIAALeraleQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG 260
NrfG super family cl34742
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 653-744 5.58e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG4235:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 5.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 653 LAHMDIYAGLYEEAYGLYDVLInDYKAKDSNTYFLAAVSAIGSNNPNAAIALLELAKLEDNTNQEATLALAMLYHEVENY 732
Cdd:COG4235    23 LGRAYLRLGRYDEALAAYEKAL-RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101

                          90
                  ....*....|..
gi 1705366487 733 EPALYQYGQMID 744
Cdd:COG4235   102 AEAIAAWQKLLA 113
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-298 1.53e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 1.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  75 KESLRFDMEKIDGMIQKANGLYLRGEREEALKIYEQISLYSE--ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTV 152
Cdd:COG2956    32 EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 153 AAINAAVCALHLNDLAK-FNYYLDLayvhLPNEGGSKLFNYYLSLINYYKGFYPEALQMFQQTnNEIYSDS--AKYLGAK 229
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKaIEVLERL----LKLGPENAHAYCELAELYLEQGDYDEAIEALEKA-LKLDPDCarALLLLAE 186

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1705366487 230 IYAKMGLNTRALENL-----QTQESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDLKTG 298
Cdd:COG2956   187 LYLEQGDYEEAIAALeraleQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG 260
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 78-300 2.20e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  78 LRFDMEKIDGMIQKANGLYLRGEREEALKIYEQI-SLYSEALSNYNL-GVAEMNQQNYAKALESFKKALNSNENQTVAAI 155
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVlTADPGNVDALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 156 NAAVCALHLNDLAKFNYYLDLAYVHLPNeggSKLFNYYLSLINYYKGFYPEALQMFQ---QTNNEIYsdSAKYLGAKIYA 232
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPN---SPLAHYLKALVDFQKKNYEDARETLQdalKSAPEYL--PALLLAGASEY 306

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1705366487 233 KMGLNTRALENL-----QTQESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDLKTGKF 300
Cdd:TIGR02917 307 QLGNLEQAYQYLnqilkYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 86-159 1.45e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 1.45e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1705366487  86 DGMIQKANGLYLR--GEREEALKIYEQISLYSEALsnYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAV 159
Cdd:PRK02603   41 DGMSAQADGEYAEalENYEEALKLEEDPNDRSYIL--YNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 653-744 5.58e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 5.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 653 LAHMDIYAGLYEEAYGLYDVLInDYKAKDSNTYFLAAVSAIGSNNPNAAIALLELAKLEDNTNQEATLALAMLYHEVENY 732
Cdd:COG4235    23 LGRAYLRLGRYDEALAAYEKAL-RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101

                          90
                  ....*....|..
gi 1705366487 733 EPALYQYGQMID 744
Cdd:COG4235   102 AEAIAAWQKLLA 113
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-298 1.53e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 1.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  75 KESLRFDMEKIDGMIQKANGLYLRGEREEALKIYEQISLYSE--ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTV 152
Cdd:COG2956    32 EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 153 AAINAAVCALHLNDLAK-FNYYLDLayvhLPNEGGSKLFNYYLSLINYYKGFYPEALQMFQQTnNEIYSDS--AKYLGAK 229
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKaIEVLERL----LKLGPENAHAYCELAELYLEQGDYDEAIEALEKA-LKLDPDCarALLLLAE 186

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1705366487 230 IYAKMGLNTRALENL-----QTQESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDLKTG 298
Cdd:COG2956   187 LYLEQGDYEEAIAALeraleQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG 260
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 87-302 5.38e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 5.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  87 GMIQKANGLYLRGEREEALKIYEQI----SLYSEALsnYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCAL 162
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEAleldPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 163 HLNDLAK-FNYYLDLAyvhlpnEGGSKLFNYYLSLINYY--KGFYPEALQMFQQ-TNNEIYSDSAKYLGAKIYAKMGLNT 238
Cdd:COG2956    88 KAGLLDRaEELLEKLL------ELDPDDAEALRLLAEIYeqEGDWEKAIEVLERlLKLGPENAHAYCELAELYLEQGDYD 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1705366487 239 RALENLQT-----QESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDLKTGKFSD 302
Cdd:COG2956   162 EAIEALEKalkldPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 78-280 1.55e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  78 LRFDMEKIDGMIQKANGLYLRGEREEALKIYEQI----SLYSEALsnYNLGVAEMNQQNYAKALESFKKALNSNENQTVA 153
Cdd:COG2956    69 LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLleldPDDAEAL--RLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 154 AINAAVCALHLNDLAKFNYYLDLAYVHLPNeggskLFNYYLSLINYY--KGFYPEALQMFQQT-NNEIYSDSAKYLGAKI 230
Cdd:COG2956   147 YCELAELYLEQGDYDEAIEALEKALKLDPD-----CARALLLLAELYleQGDYEEAIAALERAlEQDPDYLPALPRLAEL 221

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1705366487 231 YAKMGLNTRALENL----QTQESYEASLPMGLLYARIGDYDKATTMLERSMKID 280
Cdd:COG2956   222 YEKLGDPEEALELLrkalELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 90-254 1.66e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.53  E-value: 1.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  90 QKANGLYLRGEREEALKIYEQ-ISLY-SEALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDL 167
Cdd:COG3914    83 LAALLLQALGRYEEALALYRRaLALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 168 AKFNYYLDLAYVHLPNeggskLFNYYLSLINYYK--GFYPEALQMFQQTnNEIYSDSAKYLGAKIYAKMglNTRALENLQ 245
Cdd:COG3914   163 EEAIAALRRALELDPD-----NAEALNNLGNALQdlGRLEEAIAAYRRA-LELDPDNADAHSNLLFALR--QACDWEVYD 234


                  ....*....
gi 1705366487 246 TQESYEASL 254
Cdd:COG3914   235 RFEELLAAL 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
78-295 1.97e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 1.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  78 LRFDMEKIDGMIQKANGLYLRGEREEALKIYEQ-ISLY-SEALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAI 155
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKaLELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 156 NAAVCALHLNDLAKFNYYLDLAYVHLPNEGGSklfNYYLSLINYYKGFYPEALQMFQQT-NNEIYSDSAKYLGAKIYAKM 234
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEA---LYNLGLALLELGRYDEAIEAYERAlELDPDDADALYNLGIALEKL 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1705366487 235 GLNTRALENLQTQESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDL 295
Cdd:COG0457   158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 117-300 2.37e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 2.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 117 ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDLAK-FNYYLDLayvhLPNEGGSKLFNYYLS 195
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRaIRIHQKL----LERDPDRAEALLELA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 196 LINYYKGFYPEALQMFQQ-TNNEIYSDSAKYLGAKIYAKMGLNTRALENLQ-----TQESYEASLPMGLLYARIGDYDKA 269
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKlLELDPDDAEALRLLAEIYEQEGDWEKAIEVLErllklGPENAHAYCELAELYLEQGDYDEA 163

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1705366487 270 TTMLERSMKIDKEKNQSIAALNLIDLKTGKF 300
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAELYLEQGDY 194
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
75-269 2.41e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  75 KESLRFDMEKIDGMIQKANGLYLRGEREEALKIYEQ-ISLYSE-ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTV 152
Cdd:COG0457    32 EKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQaLELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 153 AAINAAVCALHLNDLAKFNYYLDLAYVHLPNEGGSklfNYYLSLINYYKGFYPEALQMFQQTNNEIYSDSAKYLGAKIYA 232
Cdd:COG0457   112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADA---LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1705366487 233 KMGLNTRALENLQTQESYEASLPMGLLYARIGDYDKA 269
Cdd:COG0457   189 ALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 78-300 2.20e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  78 LRFDMEKIDGMIQKANGLYLRGEREEALKIYEQI-SLYSEALSNYNL-GVAEMNQQNYAKALESFKKALNSNENQTVAAI 155
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVlTADPGNVDALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 156 NAAVCALHLNDLAKFNYYLDLAYVHLPNeggSKLFNYYLSLINYYKGFYPEALQMFQ---QTNNEIYsdSAKYLGAKIYA 232
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPN---SPLAHYLKALVDFQKKNYEDARETLQdalKSAPEYL--PALLLAGASEY 306

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1705366487 233 KMGLNTRALENL-----QTQESYEASLPMGLLYARIGDYDKATTMLERSMKIDKEKNQSIAALNLIDLKTGKF 300
Cdd:TIGR02917 307 QLGNLEQAYQYLnqilkYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 121-213 2.54e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 2.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 121 YNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDLAKFNYYLDLAYVHLPNEGGSklfNYYLSLINYY 200
Cdd:COG4235    21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA---LYLLGLAAFQ 97

                          90
                  ....*....|...
gi 1705366487 201 KGFYPEALQMFQQ 213
Cdd:COG4235    98 QGDYAEAIAAWQK 110
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 117-282 8.70e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 8.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 117 ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDLAKFNYYLDLAYVHLPNEGgskLFNYYLSL 196
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP---EARLNLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 197 INYYKGFYPEALQMFQqtnneiysdsakylgakiyakmglntRALEnlQTQESYEASLPMGLLYARIGDYDKATTMLERS 276
Cdd:COG4783    81 ALLKAGDYDEALALLE--------------------------KALK--LDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132


                  ....*.
gi 1705366487 277 MKIDKE 282
Cdd:COG4783   133 LELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 192-300 1.36e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 192 YYLSLINYYKGFYPEALQMFQQ-TNNEIYSDSAKYLGAKIYAKMGLNTRALENLQT-----QESYEASLPMGLLYARIGD 265
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKaLELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaleldPDEPEARLNLGLALLKAGD 87

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1705366487 266 YDKATTMLERSMKIDKEKNQSIAALNLIDLKTGKF 300
Cdd:COG4783    88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 86-159 1.45e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 1.45e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1705366487  86 DGMIQKANGLYLR--GEREEALKIYEQISLYSEALsnYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAV 159
Cdd:PRK02603   41 DGMSAQADGEYAEalENYEEALKLEEDPNDRSYIL--YNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-302 1.85e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 116 EALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDlakfnyyldlayvhlpneggsklfnyyls 195
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------------------------- 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 196 linyykgfYPEALQMFQQTNnEIYSDSAKYLG--AKIYAKMGLNTRALENLQT-----QESYEASLPMGLLYARIGDYDK 268
Cdd:COG0457    58 --------YEEALADYEQAL-ELDPDDAEALNnlGLALQALGRYEEALEDYDKaleldPDDAEALYNLGLALLELGRYDE 128

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1705366487 269 ATTMLERSMKIDKEKNQSIAALNLIDLKTGKFSD 302
Cdd:COG0457   129 AIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 78-195 4.13e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 4.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  78 LRFDMEKIDGMIQKANGLYLRGEREEALKIYEQ-ISL---YSEALsnYNLGVAEMNQQNYAKALESFKKALNSNENQTVA 153
Cdd:COG3914   139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRaLELdpdNAEAL--NNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1705366487 154 AINAAVCALHLNDLAKFNYYLD-LAYVHLPNEGGSKLFNYYLS 195
Cdd:COG3914   217 HSNLLFALRQACDWEVYDRFEElLAALARGPSELSPFALLYLP 259
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 95-182 5.45e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 5.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  95 LYLRGEREEALKIYEQISLYS--EALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDLAKFNY 172
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDpnNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                          90
                  ....*....|
gi 1705366487 173 YLDLAYVHLP 182
Cdd:COG5010   144 ALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 653-744 5.58e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 5.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 653 LAHMDIYAGLYEEAYGLYDVLInDYKAKDSNTYFLAAVSAIGSNNPNAAIALLELAKLEDNTNQEATLALAMLYHEVENY 732
Cdd:COG4235    23 LGRAYLRLGRYDEALAAYEKAL-RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101

                          90
                  ....*....|..
gi 1705366487 733 EPALYQYGQMID 744
Cdd:COG4235   102 AEAIAAWQKLLA 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 75-159 6.14e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 6.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  75 KESLRFDMEKIDGMIQKANGLYLRGEREEALKIYEQ-ISLY-SEALSNYNLGVAEMNQQNYAKALESFKKALNSN-ENQT 151
Cdd:COG4235    41 EKALRLDPDNADALLDLAEALLAAGDTEEAEELLERaLALDpDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAP 120


                  ....*...
gi 1705366487 152 VAAINAAV 159
Cdd:COG4235   121 ARLLEASI 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
101-278 6.24e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 6.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 101 REEALKIYEQISLYSEALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVCALHLNDLAK----FNYYLDL 176
Cdd:COG4785    57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAaledFDRALEL 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487 177 ----AYVHLpNEGgsklfnyylsLINYYKGFYPEALQMFQQTNNEIYSDSAKYLGAKIYAKMGLNTRALENLQTQESYea 252
Cdd:COG4785   137 dpdyAYAYL-NRG----------IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWAT-- 203

                         170       180
                  ....*....|....*....|....*.
gi 1705366487 253 slpmglLYARIGDYDKATTMLERSMK 278
Cdd:COG4785   204 ------AYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 75-184 6.96e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 6.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  75 KESLRFDMEKIDGMIQKANGLYLRGEREEALKIYEQ-ISLY-SEALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTV 152
Cdd:COG4783    28 EKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaLELDpDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1705366487 153 AAINAAVCALHLNDLAKFNYYLDLAYVHLPNE 184
Cdd:COG4783   108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 83-213 8.83e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 8.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705366487  83 EKIDGMIQKANGLYLRGEREEALKIYEQ-ISLYSE-ALSNYNLGVAEMNQQNYAKALESFKKALNSNENQTVAAINAAVC 160
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKaLELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1705366487 161 ALHLNDLAK----FNYYLDLAYVHLPneggsklFNYYLSLINYYKGFYPEALQMFQQ 213
Cdd:COG4783    82 LLKAGDYDEalalLEKALKLDPEHPE-------AYLRLARAYRALGRPDEAIAALEK 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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