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ArdC-like ssDNA-binding domain-containing protein [Enterococcus faecalis]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
ArdC super family | cl39143 | Antirestriction protein ArdC [Replication, recombination and repair]; |
447-635 | 1.24e-17 | ||||
Antirestriction protein ArdC [Replication, recombination and repair]; The actual alignment was detected with superfamily member COG4227: Pssm-ID: 443371 [Multi-domain] Cd Length: 303 Bit Score: 84.13 E-value: 1.24e-17
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Toprim_2 super family | cl48160 | Toprim-like; This is a family or Toprim-like proteins. |
223-338 | 1.69e-09 | ||||
Toprim-like; This is a family or Toprim-like proteins. The actual alignment was detected with superfamily member pfam13155: Pssm-ID: 463793 [Multi-domain] Cd Length: 88 Bit Score: 54.88 E-value: 1.69e-09
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Name | Accession | Description | Interval | E-value | ||||
ArdC | COG4227 | Antirestriction protein ArdC [Replication, recombination and repair]; |
447-635 | 1.24e-17 | ||||
Antirestriction protein ArdC [Replication, recombination and repair]; Pssm-ID: 443371 [Multi-domain] Cd Length: 303 Bit Score: 84.13 E-value: 1.24e-17
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ArdcN | pfam08401 | N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ... |
419-501 | 2.74e-11 | ||||
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662). Pssm-ID: 429975 Cd Length: 127 Bit Score: 61.59 E-value: 2.74e-11
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Toprim_2 | pfam13155 | Toprim-like; This is a family or Toprim-like proteins. |
223-338 | 1.69e-09 | ||||
Toprim-like; This is a family or Toprim-like proteins. Pssm-ID: 463793 [Multi-domain] Cd Length: 88 Bit Score: 54.88 E-value: 1.69e-09
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Name | Accession | Description | Interval | E-value | ||||
ArdC | COG4227 | Antirestriction protein ArdC [Replication, recombination and repair]; |
447-635 | 1.24e-17 | ||||
Antirestriction protein ArdC [Replication, recombination and repair]; Pssm-ID: 443371 [Multi-domain] Cd Length: 303 Bit Score: 84.13 E-value: 1.24e-17
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ArdcN | pfam08401 | N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ... |
419-501 | 2.74e-11 | ||||
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662). Pssm-ID: 429975 Cd Length: 127 Bit Score: 61.59 E-value: 2.74e-11
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Toprim_2 | pfam13155 | Toprim-like; This is a family or Toprim-like proteins. |
223-338 | 1.69e-09 | ||||
Toprim-like; This is a family or Toprim-like proteins. Pssm-ID: 463793 [Multi-domain] Cd Length: 88 Bit Score: 54.88 E-value: 1.69e-09
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DUF6782 | pfam20573 | Putative metallopeptidase family (DUF6782); This family of proteins is functionally ... |
550-585 | 2.41e-03 | ||||
Putative metallopeptidase family (DUF6782); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 256 and 362 amino acids in length. There is a conserved HEXRH sequence motif which is characteriztic of metallopeptidase enzymes. Pssm-ID: 466722 Cd Length: 241 Bit Score: 40.07 E-value: 2.41e-03
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Peptidase_M78 | pfam06114 | IrrE N-terminal-like domain; This entry includes the catalytic domain of the protein ImmA, ... |
555-612 | 8.52e-03 | ||||
IrrE N-terminal-like domain; This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC. Pssm-ID: 399250 Cd Length: 122 Bit Score: 37.01 E-value: 8.52e-03
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Blast search parameters | ||||
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