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Conserved domains on  [gi|1702117176|gb|QDK80296|]
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hypothetical protein EXU85_17470 [Spirosoma sp. KCTC 42546]

Protein Classification

TTHB210-like domain-containing protein( domain architecture ID 10184809)

TTHB210-like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TTHB210-like cd11669
Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, ...
 31-128 5.71e-24

Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, and similar proteins; TTHB210 is an uncharacterized protein found in Thermus thermophilus, and is controlled by the sigma(E) /anti-sigma(E) regulatory system. It is one of the five proteins of the extracytoplasmic function (ECF) sigma factor sigma(E)-regulated gene products whose physiological function have not been determined. Its crystallographic structure reveals a novel homodecamer although it is a dimer in solution.


:

Pssm-ID: 212168  Cd Length: 115  Bit Score: 92.46  E-value: 5.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1702117176  31 QYGESVKAGNGTLRSFVRLDAKGNPAQLGVAISEATLKSLPAEDAYWVLTMPKGSDKAqIQHVSFNWMPHGHEPDGVYNV 110
Cdd:cd11669    17 GLGELVARPSLPVRPFVSGDPLGAPVSLGFMFPEKALLGLEGPTAFLDLPLPAKAPTP-FDHVDLDWNPHGHPPVGIYDV 95

                          90
                  ....*....|....*...
gi 1702117176 111 PHFDCHFYYTSNEDRLGI 128
Cdd:cd11669    96 PHFDFHFYMVSVEEVMKI 113
 
Name Accession Description Interval E-value
TTHB210-like cd11669
Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, ...
 31-128 5.71e-24

Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, and similar proteins; TTHB210 is an uncharacterized protein found in Thermus thermophilus, and is controlled by the sigma(E) /anti-sigma(E) regulatory system. It is one of the five proteins of the extracytoplasmic function (ECF) sigma factor sigma(E)-regulated gene products whose physiological function have not been determined. Its crystallographic structure reveals a novel homodecamer although it is a dimer in solution.


Pssm-ID: 212168  Cd Length: 115  Bit Score: 92.46  E-value: 5.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1702117176  31 QYGESVKAGNGTLRSFVRLDAKGNPAQLGVAISEATLKSLPAEDAYWVLTMPKGSDKAqIQHVSFNWMPHGHEPDGVYNV 110
Cdd:cd11669    17 GLGELVARPSLPVRPFVSGDPLGAPVSLGFMFPEKALLGLEGPTAFLDLPLPAKAPTP-FDHVDLDWNPHGHPPVGIYDV 95

                          90
                  ....*....|....*...
gi 1702117176 111 PHFDCHFYYTSNEDRLGI 128
Cdd:cd11669    96 PHFDFHFYMVSVEEVMKI 113
DUF5602 pfam18197
Domain of unknown function (DUF5602); This domain is found in TTHB210 protein present in ...
 50-97 1.93e-06

Domain of unknown function (DUF5602); This domain is found in TTHB210 protein present in Thermus thermophilus. TTHB210 is a Sigma-E factor regulated gene product that forms a homodecamer. This domain is chain G and can be classified with chains A, C, E and I based on its folds.


Pssm-ID: 380135  Cd Length: 50  Bit Score: 43.84  E-value: 1.93e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1702117176  50 DAKGNPAQLGVAISEATLKSLPAEDAY--WVLTMPKGSDKAQIQHVSFNW 97
Cdd:pfam18197   1 DADGKPVFVGVMISEAALEGLPTADPGpsYPLALPAEAKATAVDHVVVDW 50
 
Name Accession Description Interval E-value
TTHB210-like cd11669
Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, ...
 31-128 5.71e-24

Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, and similar proteins; TTHB210 is an uncharacterized protein found in Thermus thermophilus, and is controlled by the sigma(E) /anti-sigma(E) regulatory system. It is one of the five proteins of the extracytoplasmic function (ECF) sigma factor sigma(E)-regulated gene products whose physiological function have not been determined. Its crystallographic structure reveals a novel homodecamer although it is a dimer in solution.


Pssm-ID: 212168  Cd Length: 115  Bit Score: 92.46  E-value: 5.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1702117176  31 QYGESVKAGNGTLRSFVRLDAKGNPAQLGVAISEATLKSLPAEDAYWVLTMPKGSDKAqIQHVSFNWMPHGHEPDGVYNV 110
Cdd:cd11669    17 GLGELVARPSLPVRPFVSGDPLGAPVSLGFMFPEKALLGLEGPTAFLDLPLPAKAPTP-FDHVDLDWNPHGHPPVGIYDV 95

                          90
                  ....*....|....*...
gi 1702117176 111 PHFDCHFYYTSNEDRLGI 128
Cdd:cd11669    96 PHFDFHFYMVSVEEVMKI 113
DUF5602 pfam18197
Domain of unknown function (DUF5602); This domain is found in TTHB210 protein present in ...
 50-97 1.93e-06

Domain of unknown function (DUF5602); This domain is found in TTHB210 protein present in Thermus thermophilus. TTHB210 is a Sigma-E factor regulated gene product that forms a homodecamer. This domain is chain G and can be classified with chains A, C, E and I based on its folds.


Pssm-ID: 380135  Cd Length: 50  Bit Score: 43.84  E-value: 1.93e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1702117176  50 DAKGNPAQLGVAISEATLKSLPAEDAY--WVLTMPKGSDKAQIQHVSFNW 97
Cdd:pfam18197   1 DADGKPVFVGVMISEAALEGLPTADPGpsYPLALPAEAKATAVDHVVVDW 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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