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Conserved domains on  [gi|1700686352|gb|QDK36225|]
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flagellar motor protein [Bdellovibrio sp. NC01]

Protein Classification

MotA/TolQ/ExbB proton channel family protein( domain architecture ID 669)

MotA/TolQ/ExbB proton channel family protein similar to flagellar motor protein MotA and biopolymer transporter ExbB/TolQ

Gene Ontology:  GO:0016020|GO:0015252
TCDB:  1.A.30

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK10414 super family cl00568
biopolymer transporter ExbB;
1-245 1.14e-96

biopolymer transporter ExbB;


The actual alignment was detected with superfamily member PRK09109:

Pssm-ID: 469824 [Multi-domain]  Cd Length: 246  Bit Score: 282.99  E-value: 1.14e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   1 MNKATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITE 80
Cdd:PRK09109    1 MDVLSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  81 IVDCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIG 160
Cdd:PRK09109   81 IVEWSNTARKEGLLGLEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 161 AVLGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQK 240
Cdd:PRK09109  161 AVMGLIHVMENLADPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELK 240


                  ....*
gi 1700686352 241 LHAFL 245
Cdd:PRK09109  241 LQGYL 245
 
Name Accession Description Interval E-value
motC PRK09109
flagellar motor protein; Reviewed
 1-245 1.14e-96

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 282.99  E-value: 1.14e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   1 MNKATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITE 80
Cdd:PRK09109    1 MDVLSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  81 IVDCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIG 160
Cdd:PRK09109   81 IVEWSNTARKEGLLGLEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 161 AVLGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQK 240
Cdd:PRK09109  161 AVMGLIHVMENLADPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELK 240


                  ....*
gi 1700686352 241 LHAFL 245
Cdd:PRK09109  241 LQGYL 245
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-250 4.78e-92

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 271.56  E-value: 4.78e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   3 KATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITEIV 82
Cdd:COG1291     1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  83 DCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIGAV 162
Cdd:COG1291    81 ELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 163 LGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQKLH 242
Cdd:COG1291   161 LGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLR 240


                  ....*...
gi 1700686352 243 AFLYSNEK 250
Cdd:COG1291   241 SFLPPSER 248
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 101-213 4.11e-29

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 106.02  E-value: 4.11e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 101 NAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIGAVLGLIHVMGNLTD----TS 176
Cdd:pfam01618   3 NSPEDRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLGDagpgLS 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1700686352 177 KLGAGIAVAFVATVYGVSSAnLLFLPLGNKLKKNVHN 213
Cdd:pfam01618  83 ALAPGIAEALIATAYGLFVA-IPALPFYNKLKRRSER 118
 
Name Accession Description Interval E-value
motC PRK09109
flagellar motor protein; Reviewed
 1-245 1.14e-96

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 282.99  E-value: 1.14e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   1 MNKATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITE 80
Cdd:PRK09109    1 MDVLSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLEGGIDR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  81 IVDCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIG 160
Cdd:PRK09109   81 IVEWSNTARKEGLLGLEDVADREPDPFARKGLQLLVDGAEPESIRSVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 161 AVLGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQK 240
Cdd:PRK09109  161 AVMGLIHVMENLADPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELK 240


                  ....*
gi 1700686352 241 LHAFL 245
Cdd:PRK09109  241 LQGYL 245
MotA COG1291
Flagellar motor component MotA [Cell motility];
3-250 4.78e-92

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 271.56  E-value: 4.78e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   3 KATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITEIV 82
Cdd:COG1291     1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKADYEELIELLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  83 DCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIGAV 162
Cdd:COG1291    81 ELAEKARKEGLLALESDIEEIDDPFLRDGLRLVVDGTDPEEIRELLETEIEAMEERHEAGAKVFEAMGDYAPAFGIIGTV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 163 LGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQKLH 242
Cdd:COG1291   161 LGLIQMLGNLDDPSALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREMIIEGLLAIQAGENPRIIEEKLR 240


                  ....*...
gi 1700686352 243 AFLYSNEK 250
Cdd:COG1291   241 SFLPPSER 248
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 1-250 1.68e-62

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 196.72  E-value: 1.68e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   1 MNKATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAE-ESEIKERIT 79
Cdd:PRK08124    1 MDITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKkDPSKEELIE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  80 EIVDCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGII 159
Cdd:PRK08124   81 QFVEWASESRREGLLALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 160 GAVLGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQ 239
Cdd:PRK08124  161 GAVIGLIAALGNLSDIEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELKYIIIEGVLAIQEGNAPRVIEE 240

                         250
                  ....*....|.
gi 1700686352 240 KLHAFLYSNEK 250
Cdd:PRK08124  241 KLLGYLSPKER 251
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 1-249 2.57e-55

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 178.00  E-value: 2.57e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   1 MNKATWLGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITE 80
Cdd:PRK08456    1 MDLSTILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKNPGVNLNERIKQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  81 IVDCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIG 160
Cdd:PRK08456   81 LVELATLARKDGVLALEGRVAQIEDEFLKNGLSMLVDGKDLEEIKESMEIQIEEMEEYYHGAAHYWITAGETCPTMGLVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 161 AVLGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQK 240
Cdd:PRK08456  161 AVMGLMLALQKLDNPAEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAEGANPRDLEEK 240


                  ....*....
gi 1700686352 241 LHAFLYSNE 249
Cdd:PRK08456  241 LLNYLSPGE 249
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 5-250 1.31e-49

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 163.73  E-value: 1.31e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   5 TWLGLLVGFGGIILGNLLEGG--HMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITEIV 82
Cdd:PRK06926    8 TPVGIFLGITIVVLGVISNSGlsGFLSFIDLTSILIVTGGLCAALFISFSPKDLKLAPRVLKQAFQSQEDDVEELVQTFV 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  83 DCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIGAV 162
Cdd:PRK06926   88 SLSEKARREGLLSLEAELEEVKDPFIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYAPAWGMIGTL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 163 LGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQKLH 242
Cdd:PRK06926  168 VGLVLMLKNLNDPSTLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEEEVFVKQVIIEGVIGVQSGQNPRILEEKLS 247


                  ....*...
gi 1700686352 243 AFLYSNEK 250
Cdd:PRK06926  248 VFSSKEDW 255
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 7-249 8.23e-31

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 114.69  E-value: 8.23e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   7 LGLLVGFGGIILGNLLEGGHMS---SLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITEIVD 83
Cdd:PRK06743    1 VGIIVGFAIVIAAIMLGGGGIKafkNFLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  84 CSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIGAVL 163
Cdd:PRK06743   81 FSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 164 GLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQKLHA 243
Cdd:PRK06743  161 GLIIMLQNLQDTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFVIEAISELYRGQIPSKLKLKLDT 240


                  ....*.
gi 1700686352 244 FLYSNE 249
Cdd:PRK06743  241 YVYETK 246
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 101-213 4.11e-29

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 106.02  E-value: 4.11e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 101 NAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIGAVLGLIHVMGNLTD----TS 176
Cdd:pfam01618   3 NSPEDRFLKKGLQLVVDGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNLGDagpgLS 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1700686352 177 KLGAGIAVAFVATVYGVSSAnLLFLPLGNKLKKNVHN 213
Cdd:pfam01618  83 ALAPGIAEALIATAYGLFVA-IPALPFYNKLKRRSER 118
PRK08990 PRK08990
flagellar motor protein PomA; Reviewed
 1-245 1.71e-27

flagellar motor protein PomA; Reviewed


Pssm-ID: 181604 [Multi-domain]  Cd Length: 254  Bit Score: 105.89  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   1 MNKATWLGLLVGFGgIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEESEIKERITE 80
Cdd:PRK08990    1 MDLATLIGLIGAFA-FVIMAMVLGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFGAVKIAGKAFMFKIDKPEDLIEQ 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  81 IVDCSRLAKKESILALEPRlnAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKIWADAGGFAPTIGIIG 160
Cdd:PRK08990   80 IVEMADAARKGGFLALEEA--EISNSFMQKGVDLLVDGHDGDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAMGMIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 161 AVLGLIHVMGNLTDTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTREKMMILEGGLLVASGINPVLLEQK 240
Cdd:PRK08990  158 TLIGLVAMLSNMDDPKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGF 237


                  ....*
gi 1700686352 241 LHAFL 245
Cdd:PRK08990  238 LKNYL 242
PRK09110 PRK09110
flagellar motor stator protein MotA;
7-230 6.12e-13

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 66.73  E-value: 6.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   7 LGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRA---EESEIKERITEIVD 83
Cdd:PRK09110    5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGpkyKKADYMDLLALLYE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  84 CSRLAKKESILALEPRlnaIKDP-----------LLKG---------VLRCVIDG-VEVNTIRDIYETQIQTEEDELLSG 142
Cdd:PRK09110   85 LLRKARQEGMMALEAH---IENPeespifakypkILKDhhlvdficdYLRLMISGnMNPHEIEALMDEEIETHHHEAEVP 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 143 AKIWADAGGFAPTIGIIGAVLGLIHVMGNLT-DTSKLGAGIAVAFVATVYGVSSANLLFLPLGNKLKKNVHNTTRekMMI 221
Cdd:PRK09110  162 AHALQKVADALPAFGIVAAVLGVVKTMGSIDqPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTK--MYQ 239


                  ....*....
gi 1700686352 222 LEGGLLVAS 230
Cdd:PRK09110  240 CIKVTLLAS 248
PRK12482 PRK12482
flagellar motor stator protein MotA;
7-223 3.53e-07

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 50.13  E-value: 3.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352   7 LGLLVGFGGIILGNLLEGGHMSSLMQLTAFIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFRAEE--SEIKER------- 77
Cdd:PRK12482    5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRRKEygVEFQRQlllllye 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  78 ITEIVDCSRLAKKESILAlEPRLNAI--KDPLL---KGVLRCVIDG--------VEVNTIRDIYETQIQTEEDELLSGAK 144
Cdd:PRK12482   85 LLEMVQEGGLKRLDQHIE-IPEESSLfqKYPLIlqqKRLITFISDNfrlmamgkINQHELEGILDQELDAVEEELLQPSR 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352 145 IWADAGGFAPTIGIIGAVLGLIHVMGNLTDT-SKLGAGIAVAFVATVYGVSSANLLFLPLGNKLkknvHNTTREKMMILE 223
Cdd:PRK12482  164 SLQRIAEAMPGFGICAAVLGIIITMQSIDGSiAEIGLKVAAALVGTFLGVFICYCLMDPLANAM----EQEIKKELSLLE 239
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 7-68 2.01e-05

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 42.00  E-value: 2.01e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1700686352   7 LGLLVGFGGIILGNLLEGGHMSSLMQLTA-FIIVLAGTIGAVMVSSSEKDLKTGLALAKSAFR 68
Cdd:pfam20560   2 IGIVVVLGCVFGGYALAGGHLGVLWQLPFeLLIIGGAAIGAFIIANPMKVLKATLKALPKAFK 64
TolQ COG0811
Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular ...
 66-192 6.16e-04

Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440573  Cd Length: 199  Bit Score: 39.82  E-value: 6.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700686352  66 AFRAEESEIKERITEIVDCSRLAKKESILALEPRLNAIKDPLLKGVLRCVIDGVEVNTIRDIYETQIQTEEDELLSGAKI 145
Cdd:COG0811    33 FLRRARRRARKFLRAFLELWSAGDLDEAIELCEARNSPLARILAAGLRELKSGGGREAIERALEEAASRELPRLERGLSF 112

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1700686352 146 WADAGGFAPTIGIIGAVLGLIHVMGNL-----TDTSKLGAGIAVAFVATVYG 192
Cdd:COG0811   113 LATIGSIAPLLGLLGTVWGMINAFQAIaaagqADLAVVAGGISEALITTAAG 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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