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Conserved domains on  [gi|1699475775|gb|QDJ00328|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Polioptila dumicola]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-323 1.18e-153

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 434.25  E-value: 1.18e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00112   24 NHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00112  104 MKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00112  184 IAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPK 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKTTNPTMAILTTMSLILLPISPLIL 320
Cdd:MTH00112  264 WLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSPMIL 343


                  ...
gi 1699475775 321 PTI 323
Cdd:MTH00112  344 TII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-323 1.18e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 434.25  E-value: 1.18e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00112   24 NHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00112  104 MKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00112  184 IAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPK 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKTTNPTMAILTTMSLILLPISPLIL 320
Cdd:MTH00112  264 WLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSPMIL 343


                  ...
gi 1699475775 321 PTI 323
Cdd:MTH00112  344 TII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-247 6.46e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 6.46e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLF-SSMTNAwYTGQWDISQMTHPTS------- 71
Cdd:COG1007   122 NDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAaggansp 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  72 -----CVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMK----FPPITLLYMTSPSLNS---TLLTTMALLSA 139
Cdd:COG1007   201 llllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 140 AVGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLAL--LNFYL--YTLMTMTVFLSLNSM-KALKLSTLMTSW--- 211
Cdd:COG1007   281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLsRKGGEAEEIEDLagl 360

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1699475775 212 -TKTPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQEL 247
Cdd:COG1007   361 aRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-245 2.83e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 2.83e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQM-----------TH 68
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  69 PTSCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLL-STAMKFPPITLLYMTSPSLNST-----LLTTMALLSAAVG 142
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 143 GWMGLNQTQTRKILAFSSISHLGWMAIII----TYSPKLALLNFYLYTLMTMTVFLSLNS----MKALKLSTLMTS-WTK 213
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrRVHTRNIRDYGGlAKT 241

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1699475775 214 TPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQ 245
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-252 5.36e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 5.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHP---------- 69
Cdd:TIGR01770 122 NDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFlsngmlnisl 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  70 --TSCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMK---FPPITLLYMTSPS----LNSTLLTTMALLSAA 140
Cdd:TIGR01770 202 llLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIFLAIIAFLSML 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 141 VGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLN--FYL--YTLMTMTVFLSLNSMKALK------LSTLMTS 210
Cdd:TIGR01770 282 IGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewieyISDFAGL 361

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1699475775 211 WTKTPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 252
Cdd:TIGR01770 362 FKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-323 1.18e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 434.25  E-value: 1.18e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00112   24 NHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00112  104 MKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00112  184 IAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPK 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKTTNPTMAILTTMSLILLPISPLIL 320
Cdd:MTH00112  264 WLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSPMIL 343


                  ...
gi 1699475775 321 PTI 323
Cdd:MTH00112  344 TII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-323 1.88e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 365.40  E-value: 1.88e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00070   24 NHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALM 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00070  104 MKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00070  184 IAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPK 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKTTNPTMAILTTMSLILLPISPLIL 320
Cdd:MTH00070  264 WLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILSLMLLPITPTIL 343


                  ...
gi 1699475775 321 PTI 323
Cdd:MTH00070  344 NLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-320 8.45e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 363.74  E-value: 8.45e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   2 HWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALAM 81
Cdd:MTH00135   25 HWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALAL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  82 KLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSlNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSSI 161
Cdd:MTH00135  105 KIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSI 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 162 SHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPKW 241
Cdd:MTH00135  184 AHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKW 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 242 LIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHInKTTNPTM--AILTTMSLILLPISPLI 319
Cdd:MTH00135  264 LILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRL-PSTQLTLplAISTTATLMLLPLTPAI 342


                  .
gi 1699475775 320 L 320
Cdd:MTH00135  343 L 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-320 1.31e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 317.17  E-value: 1.31e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00105   24 SHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00105  104 MKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00105  184 IAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPK 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKT-TNPTMAILTTMSLILLPISPLI 319
Cdd:MTH00105  264 WMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTkPMTLLPTLIILSTMLLPLTPML 343


                  .
gi 1699475775 320 L 320
Cdd:MTH00105  344 S 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-323 3.48e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.01  E-value: 3.48e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00200   24 SHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00200  104 LKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00200  184 IAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPK 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKTTNPTMAILTTMSLILLPISPLIL 320
Cdd:MTH00200  264 WLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSILGLPLTPQLL 343


                  ...
gi 1699475775 321 PTI 323
Cdd:MTH00200  344 FLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-313 1.22e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 235.98  E-value: 1.22e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00041   24 NHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00041  104 LKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00041  184 IAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNK 263

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYCTAITLPPHTTNSMKQWHINKTTNPTMAILTTMSLILL 313
Cdd:MTH00041  264 FISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-320 2.08e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.40  E-value: 2.08e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWytgqwdISQMTHPTSCVILTTALA 80
Cdd:MTH00160   25 NSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINSSLL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTspsLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00160   99 LKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSS 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00160  176 INHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPK 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 241 WLIIQELTKQEMAPAATMISLLSLLGLFFYLRLAYcTAITLPPHTTNSMKQWHINKTTNPTMaILTTMSLILLPISPLIL 320
Cdd:MTH00160  256 WIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKFSLILN-FLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-252 1.72e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 157.36  E-value: 1.72e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   2 HWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISqmthptscVILTTALAM 81
Cdd:MTH00144   25 HWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  82 KLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLN-STLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00144   97 KLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlAYLLCVISVLSALVGSIGGLNQTQVRALLAYSS 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLnSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00144  177 ISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSK 255

                         250
                  ....*....|..
gi 1699475775 241 WLIIQELTKQEM 252
Cdd:MTH00144  256 LLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-252 3.61e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.77  E-value: 3.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSmtnawyTGQWDISQMTHPTSCVILTTALA 80
Cdd:MTH00011   26 NNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLM 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00011  100 LKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSS 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00011  180 IGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPK 259

                         250
                  ....*....|..
gi 1699475775 241 WLIIQELTKQEM 252
Cdd:MTH00011  260 LMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-247 5.10e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.41  E-value: 5.10e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAwytgqwdISQMTHPTSCVILTTALA 80
Cdd:MTH00197   18 SNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLYLSLLSVVLVILGLL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  81 MKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLymTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSS 160
Cdd:MTH00197   91 LKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 161 ISHLGWMAIIITYSPKLALLNFYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:MTH00197  169 IGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLK 248


                  ....*..
gi 1699475775 241 WLIIQEL 247
Cdd:MTH00197  249 WLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-247 6.46e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 6.46e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLF-SSMTNAwYTGQWDISQMTHPTS------- 71
Cdd:COG1007   122 NDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAaggansp 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  72 -----CVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMK----FPPITLLYMTSPSLNS---TLLTTMALLSA 139
Cdd:COG1007   201 llllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 140 AVGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLAL--LNFYL--YTLMTMTVFLSLNSM-KALKLSTLMTSW--- 211
Cdd:COG1007   281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLsRKGGEAEEIEDLagl 360

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1699475775 212 -TKTPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQEL 247
Cdd:COG1007   361 aRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-245 2.83e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 2.83e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQM-----------TH 68
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  69 PTSCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLL-STAMKFPPITLLYMTSPSLNST-----LLTTMALLSAAVG 142
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 143 GWMGLNQTQTRKILAFSSISHLGWMAIII----TYSPKLALLNFYLYTLMTMTVFLSLNS----MKALKLSTLMTS-WTK 213
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrRVHTRNIRDYGGlAKT 241

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1699475775 214 TPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQ 245
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-256 2.91e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.51  E-value: 2.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTS-------- 71
Cdd:PRK05777  123 NDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgnsll 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  72 ----CVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMK---FPPIT-LLYMTSPSL---NSTLLTTMALLSAA 140
Cdd:PRK05777  203 llfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLsedWQQVLAIIAIASML 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 141 VGGWMGLNQTQTRKILAFSSISHLGWM--AIIITYSPKLALLNFYL--YTLMTMTVFLSLNSM-KALKLSTLMTSWT--- 212
Cdd:PRK05777  283 VGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLrRKGGEAESISDFAgls 362

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1699475775 213 -KTPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAA 256
Cdd:PRK05777  363 kRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-244 4.41e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.79  E-value: 4.41e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQSAASALVLFS-------------SMTNAWYTGQWDISQM 66
Cdd:MTH00196   13 SNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  67 THPTSCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNstLLTTMALLSAAVGGWMG 146
Cdd:MTH00196   93 SVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFSLFVGAIGA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 147 LNQTQTRKILAFSSISHLGWMAIIITY----SPKLALLNFYLYTLMTMTVF---LSLNSMKAL--KLSTLMtswTKTPAV 217
Cdd:MTH00196  171 LNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYKNLiiEFSGLS---RRLPIL 247

                         250       260
                  ....*....|....*....|....*..
gi 1699475775 218 STMLMLTLLSLAGLPPLTGFLPKWLII 244
Cdd:MTH00196  248 AITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 3-244 3.77e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 96.24  E-value: 3.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   3 WITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDI----SQMTHPTSCVILTT 77
Cdd:MTH00199  119 WLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITI 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  78 ALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNSTLLTtmALLSAAVGGWMGLNQTQTRKILA 157
Cdd:MTH00199  199 SLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 158 FSSISHLGW----MAIIITYSPKLALLNFYLYTLMTMTVF---LSLNSMKALKLSTLMTSwTKTPAVSTMLMLTLLSLAG 230
Cdd:MTH00199  277 YSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAG 355

                         250
                  ....*....|....
gi 1699475775 231 LPPLTGFLPKWLII 244
Cdd:MTH00199  356 IPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-252 5.36e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 5.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHP---------- 69
Cdd:TIGR01770 122 NDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFlsngmlnisl 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  70 --TSCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMK---FPPITLLYMTSPS----LNSTLLTTMALLSAA 140
Cdd:TIGR01770 202 llLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIFLAIIAFLSML 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 141 VGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLN--FYL--YTLMTMTVFLSLNSMKALK------LSTLMTS 210
Cdd:TIGR01770 282 IGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewieyISDFAGL 361

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1699475775 211 WTKTPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 252
Cdd:TIGR01770 362 FKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 7-259 6.16e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.44  E-value: 6.16e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   7 WAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTH----------PTSCVILT 76
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  77 TALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPI-------TLLYMTSPSLN-STLLTTMALLSAAVGGWMGLN 148
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFlGTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 149 QTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLYTLMTMTV----FLS----LNSMKALKLSTLMTSWTKTPAVSTM 220
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAkallFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1699475775 221 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATMI 259
Cdd:COG0651   373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-244 2.16e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.90  E-value: 2.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   2 HWITAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQSAASALVLFSSMTNAWYTGQ----WDISQMTH 68
Cdd:MTH00198  209 NWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlGTILSATL 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  69 PTSCVIL----------TTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLymTSPSLNSTLLTTMALLS 138
Cdd:MTH00198  289 ETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAIIS 366

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 139 AAVGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLY-------TLMTMTVFLSL--------------- 196
Cdd:MTH00198  367 LVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALASFTVICTLeefgtrtptsrqrdg 446

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1699475775 197 ---NSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPKWLII 244
Cdd:MTH00198  447 sfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 28-240 1.05e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.49  E-value: 1.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  28 RAIEAATKYFLVQSAASALVL--FSsmtnaWYTGQ-------WDI------SQMTHPTSCVI----LTTALAMKLGLVPF 88
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  89 HFWFPEVLQGSSLPVGLLLSTAMKFPPITL----LYMTSPSLNS---TLLTTMALLSAAVGGWMGLNQTQTRKILAFSSI 161
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 162 SHLGWMAI-IITYSPKLALLNFYLYTLmtMTVFLSLNSMKALKLSTLMT----------SWTKTPAVSTMLMLTLLSLAG 230
Cdd:CHL00049  314 GQIGYVIIgIIVGDSNDGYASMITYML--FYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGG 391

                         250
                  ....*....|
gi 1699475775 231 LPPLTGFLPK 240
Cdd:CHL00049  392 IPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
27-240 1.42e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.15  E-value: 1.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  27 PRAIEAATKYFLVQSAASALVLF-SSMTNAWYTGQWDISQM-----THPT-----SCVILTTALAMKLGLVPFHFWFPEV 95
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIalaliTSPSlglalALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  96 LQGSSLPVGLLLSTAMKFP----PITLLYMTSPSLNS---TLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGWMA 168
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 169 I--IITYSPKLALLNFYLYTLMtmtvFLSLNSMKALKLSTLMTS----------WTKTPAVSTMLMLTLLSLAGLPPLTG 236
Cdd:PRK02504  317 IglVAGTEAGYASMVFYLLAYL----FMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                  ....
gi 1699475775 237 FLPK 240
Cdd:PRK02504  393 FFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-243 4.21e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.58  E-value: 4.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  10 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQSAASALVLFSSmtnAWYTGQWDISQM-------------THPTSCVIL 75
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMaylavkmsenptvVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  76 TTALAMKLGLVPFHFWFPEVLQG--SSLPVGLLLSTAMKFPPI--TLLYMTSPSLNST----LLTTMALLSAAVGGWMGL 147
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 148 NQTQTRKILAFSSISHLGWM------AIIITYSPKLALLNFylyTLMTMTVFLSLNS--MKAL----------------- 202
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGE---IALAGGIYHIVNHalYKALlfltagaviyetgtrnl 383

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1699475775 203 -KLSTLMTSWTKTpavSTMLMLTLLSLAGLPPLTGFLPKWLI 243
Cdd:PRK08376  384 nELGGLARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-259 5.35e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.28  E-value: 5.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  10 LEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFS-----SMTNawYTGQWDISQMTHPTSCV-----ILTTAL 79
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTG--TLNMADLAGALAENPTVvtafgFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  80 AMKLGLVPFHFWFPEVLQGSSLPVGLLLS---TAMKFPPITLLYMT-------SPSLNSTLLTTMALLSAAVGGWMGLNQ 149
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSglvTKVAVYALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 150 TQTRKILAFSSISHLGWMAIIITYSPKLALLN--FYL--YTLMTMTVFLSLNSM----KALKLSTLMTSWTKTPAVSTML 221
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1699475775 222 MLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATMI 259
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-248 2.21e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 54.96  E-value: 2.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  10 LEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDIS--QMTHPTSCVILTTALAMKLGLVP 87
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  88 FHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNST--LLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLG 165
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 166 WmaiiITYSPKLAllnfYLYTLMTMTVFLSLNSMKALKLSTLMTSWTKTPA---VSTMLMLTLLSLAGLPPLTGFLPKWL 242
Cdd:PRK07234  283 F----ILAAPLVG----GLYALAHGLVKSTLFLCAGALPSRNFTELISQMLgigKWIPLTMASFSIAGFPLLAGFVSKVL 354


                  ....*.
gi 1699475775 243 IIQELT 248
Cdd:PRK07234  355 TLKNLL 360
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 26-169 2.68e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 54.70  E-value: 2.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  26 HPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQW--DISQMTHPTSCVILTT--------ALAMKLGLVPFHFWFPEV 95
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLllflaffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  96 LQGSSLPVGLLLSTAMK--------------FPPITLLYmtspslnSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSSI 161
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYF-------APLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308


                  ....*...
gi 1699475775 162 SHLGWMAI 169
Cdd:COG1008   309 SHMGFVLL 316
PRK12650 PRK12650
DUF4040 family protein;
6-240 1.20e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.12  E-value: 1.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   6 AWaglEINTLAILPLISKSHhPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCV---ILTTALAM- 81
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  82 -------KLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNST-----LLTTMALLSAAVGGWMGLNQ 149
Cdd:PRK12650  214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQK 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 150 TQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLYTL--------MTMTVFLSLNSMKALKLSTLMTSWTKTPAVSTML 221
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLahalfkssLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSV 373

                         250
                  ....*....|....*....
gi 1699475775 222 MLTLLSLAGLPPLTGFLPK 240
Cdd:PRK12650  374 TIAALSMAAVPPLFGFVSK 392
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-188 2.26e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.85  E-value: 2.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSS----------MTNAWYTGQW-DISQMTHP 69
Cdd:PRK06458  128 NNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLKHASL 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  70 TSCVILTTALAM-------KLGLVPFHFWFPE-----------VLQGSSLPVGLLLSTAMKfppITLLYMTSPSLNSTLL 131
Cdd:PRK06458  208 LDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY---ILIDAAIGSDFPGRLL 284

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1699475775 132 TTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLYTLM 188
Cdd:PRK06458  285 LIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-259 1.52e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   1 NHWITAWAGLEINTLAILPLISKSHHpRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDIS-------QMTHPTSCV 73
Cdd:PRK08668  118 NDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFAL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  74 ILTTALA----MKLGLVPFHFWFPE-----------VLQG--SSLPV-GLLLSTAMkFPPITLL-----YMTSPSLNsTL 130
Cdd:PRK08668  197 IVFLFLLafgvAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAyGFLLVLYV-LPGTKLFsefgtYRGVPLFN-YI 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 131 LTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLAL-------LNFYLY-TLMTMTVFLSLNSMKAL 202
Cdd:PRK08668  275 LAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNHALFkGLFFLIFAAVIYRTGTT 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1699475775 203 KLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATMI 259
Cdd:PRK08668  355 KISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 74-240 1.53e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  74 ILTTALAmKLGLVPFHFWFPEVLQGSSlPV-GLLLSTAMKFPPITLLYMTSPSLNST-----LLTTMALLSAAVGGWMGL 147
Cdd:PRK12644  209 ILVGALS-KSAIVPFHFWLPGAMAAPT-PVsAYLHAAAMVKAGIYLVARLAPGFADVpvwrpTVLVLGLATMLLGGWRAL 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 148 NQTQTRKILAFSSISHLGWMAIIITYSPKLALLnfylyTLMTMTVFLSLnsMKAL------------------KLSTLmt 209
Cdd:PRK12644  287 RQHDLKLILAYGTVSQLGFLTVLVGIGTRDAAL-----AGLAMLLAHAL--FKAAlflvvgiidhstgtrdirKLSGL-- 357

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1699475775 210 sWTKTPAVSTMLMLTLLSLAGLPPLTGFLPK 240
Cdd:PRK12644  358 -GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
32-180 4.74e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.77  E-value: 4.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  32 AATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSCVILTT----------ALAMKLGLVPFHFWFPEVLQGSSL 101
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLSTqllllapilvGFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 102 PVGLLLS-TAMKFPPITLL------YMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGWMAIIITYS 174
Cdd:PRK06473  238 PVSVLLAgVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 1699475775 175 PKLALL 180
Cdd:PRK06473  318 TPLSIL 323
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 272-317 5.51e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.02  E-value: 5.51e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1699475775 272 RLAYCTAITLPPHTTNSMKQWHINKTTNPTM-AILTTMSLILLPISP 317
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLlPTLTTLSILLLPLTP 51
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 25-247 1.50e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.30  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  25 HHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQM----THPTSCVILTTALAM-------KLGLVPFHFWFP 93
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  94 EVLQGSSlPV-GLLLSTAM---------KFPPItllYMTSPSLnSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISH 163
Cdd:COG1009   236 DAMEGPT-PVsALLHAATMvkagvyllaRLSPL---FALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQ 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 164 LGWMAIIITYSPKLALLNFylytLMTMTVFlslnsmKAL------------------KLSTLmtsWTKTPAVSTMLMLTL 225
Cdd:COG1009   311 LGYMFLALGVGAYVAALFH----LLTHAFF------KALlflgagsvihatgtrdirKMGGL---RKKMPITAITFLIGA 377

                         250       260
                  ....*....|....*....|..
gi 1699475775 226 LSLAGLPPLTGFLPKWLIIQEL 247
Cdd:COG1009   378 LSLAGIPPFAGFFSKEAILEAA 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 7-187 1.72e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775   7 WAGLEINTLAILPLISKSHHPRAIEAATKYFLVQSAA------SALVLFSSMTNAWYTG--QWD--------ISQMTHPT 70
Cdd:PRK08676  128 WIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTelaahaslLSPSVLGA 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  71 SCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLN--------STLLTTMALLSAAVG 142
Cdd:PRK08676  208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRqsgaaeqfSNVLIGLGIFSIAVA 287

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1699475775 143 GWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLYTL 187
Cdd:PRK08676  288 AFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 27-245 1.83e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.09  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  27 PRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQ-WDISQ-MTHPTSCVILT-------TALAMKLGLVPFHFWFPEVLQ 97
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLElLNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  98 GSSLPVGLLLS-TAMKFPPITLLYMTSPSLN------STLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGWMAII 170
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFNLPLFPdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 171 ITYSPKLALLNFYLYT----LMTMTVFLSL----NSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFLPKWL 242
Cdd:TIGR01972 312 IFSFNELGISGAVFQMishgLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 1699475775 243 IIQ 245
Cdd:TIGR01972 392 ILL 394
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 25-240 2.14e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.98  E-value: 2.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  25 HHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPTSC--------------VILTTALAMKLGLVPFHF 90
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  91 WFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNST-----LLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLG 165
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 166 WMAIIITYSPK------LALLNFYLYTLMTMTVFLSL------NSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPP 233
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 1699475775 234 LTGFLPK 240
Cdd:PRK12649  396 LNGFLSK 402
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
11-245 3.68e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 45.02  E-value: 3.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  11 EINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTH-----PTSCVILTtALAMKL-- 83
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYG-GLLLLIfg 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  84 -----GLVPFHFWFPEVLQGSSLPVGLLLSTAMKFPPITL------LYMTSPSLNS--TLLTTMALLSAAVGGWMGLNQT 150
Cdd:PRK06277  209 llygsGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSaqGVLIALSVLAMVFGVVMALLQT 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 151 QTRKILAFSSISHLGWMAIIITYSPKLAL-------LNFYLYTLMTMTVFLSLNSM-KALKLSTLMTSWTKTPAVSTMLM 222
Cdd:PRK06277  289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKSALFLGAGIVSYRtKTSNLRKLGGLLPVMPVVAFMVL 368

                         250       260
                  ....*....|....*....|...
gi 1699475775 223 LTLLSLAGLPPLTGFLPKWLIIQ 245
Cdd:PRK06277  369 CAKLAISGVPPFNGFQSKLMLAQ 391
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
69-245 5.90e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 5.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  69 PTSCVILTTALAMKLGLVPFhFWFPEVLQGSSLPVGLLLSTAMK-------FPPITLLYMTSPSLNSTLLTTMALLSAAV 141
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 142 GGWMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLYTLMTMTV----FLSLNSMKAL----KLSTLMTSWTK 213
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVktalFLIAGSLVRLtgyrSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1699475775 214 TPAVSTMLMLTLLSLAGLPPLTGFLPKWLIIQ 245
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 86-243 7.57e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.52  E-value: 7.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  86 VPFHFWFPEVLQGSSlPVGLLLSTA-MKFPPITLLYMTSPSLNST-----LLTTMALLSAAVGGWMGLNQTQTRKILAFS 159
Cdd:PRK12647  212 FPFHFWLPNAMEAPT-PVSAYLHSAtMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 160 SISHLGWMAIIITYSPKLALLNFYLY----TLMTMTVFLSLNSMK-------ALKLSTLmtsWTKTPAVSTMLMLTLLSL 228
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                         170
                  ....*....|....*
gi 1699475775 229 AGLPPLTGFLPKWLI 243
Cdd:PRK12647  368 AGLPPLFGFLAKELI 382
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 82-248 1.21e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.79  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  82 KLGLvpfHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSP-----SLNSTLLTTMALLSAAVGGWMGLNQTQTRKIL 156
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPlfekaPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 157 AFSSISHLGWMAIIITY--SPKLALLNFYLYTLMTMTVFLSLNSM---------KALKLSTLMTSwtkTPAVSTMLMLTL 225
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|...
gi 1699475775 226 LSLAGLPPLTGFLPKWLIIqELT 248
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLIL-ELT 416
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-244 3.29e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  10 LEINTLAILPLISKSHHPRAIEAATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTH-----PTSCVI------LTTA 78
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLiiqdlPTNRAIqigvlfIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  79 LAMKLGLVPFHFWFPEVLQGSSLPVGLLLS----TAMKFPPITLLY--------MTSPSLNSTLLTtMALLSAAVGGWMG 146
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYdvfkanfvFTTLPFNNVFMI-LAALAIVFGSVLA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 147 LNQTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLY----TLMTMTVFLSLNSMK----ALKLSTLMTSWTKTPAVS 218
Cdd:PRK12662  298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKIT 377

                         250       260
                  ....*....|....*....|....*.
gi 1699475775 219 TMLMLTLLSLAGLPPLTGFLPKWLII 244
Cdd:PRK12662  378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 27-171 4.78e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.73  E-value: 4.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  27 PRAIEAATKYFLVQSAASALVLFSSMTNAWY----TGQWDISQ-MTHPTSCVILT-------TALAMKLGLVPFHFWFPE 94
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  95 VLQ-----GSSLPVGLLLST-AMKFPPITL-LYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGWM 167
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgAYGLLRFSLpLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316


                  ....
gi 1699475775 168 AIII 171
Cdd:PRK05846  317 TLGI 320
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
32-245 5.47e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 5.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  32 AATKYFLVQSAASALVLFSSMTNAWYTGQ----------WDISQMTHPTSCVILTTALAMKLGLVPFHFWFPEVLQGSSL 101
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdydaistQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 102 PVGLLLSTAM-KFPPITL------LYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLGW-------- 166
Cdd:PRK07363  238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaag 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 167 --------MAIIITYSPKLALLnFYLYTLMTMTVflslNSMKALKLSTLMTSWTKTPAVSTMLMLTLLSLAGLPPLTGFL 238
Cdd:PRK07363  318 tqlsllgaVAQMISHGLILALL-FHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                  ....*..
gi 1699475775 239 PKWLIIQ 245
Cdd:PRK07363  393 AEFIVFQ 399
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 32-171 6.44e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.17  E-value: 6.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  32 AATKYFLVQSAASALVLFSSMTNAWYTGQ--WDISQMTH---PTSCVILT-----TALAMKLGLVPFHFWFPEVLQGSSL 101
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 102 PVGLLLSTamkfppiTLLYMTSPSL---NSTLLTTMALLSAAV-----------GGWMGLNQTQTRKILAFSSISHLGWM 167
Cdd:PRK12561  218 PVSMILAG-------VLLKMGGYALirfNVQMLPDAHVYFAPAlailgvvniiyGALNAFAQDNVKRRLAYSSVSHMGFV 290


                  ....
gi 1699475775 168 AIII 171
Cdd:PRK12561  291 LLGI 294
PRK12646 PRK12646
DUF4040 family protein;
87-249 9.92e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.89  E-value: 9.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  87 PFHFWFPEVLQGSSLPVGLLLSTAMKFPPITLLYMTSPSLNST-----LLTTMALLSAAVGGWMGLNQTQTRKILAFSSI 161
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 162 SHLGW-MAII-----ITYSPKLALLNFY-------LYTLMTMTVFLSLNSMKA------------LKLSTLMTSWTKTPA 216
Cdd:PRK12646  308 SQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFKCALFMGVgiidheagtrdiRILSGMRQLFPKMNL 387

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1699475775 217 VstmLMLTLLSLAGLPPLTGFLPKWLIIQELTK 249
Cdd:PRK12646  388 V---MTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 84-255 1.36e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.20  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  84 GLVPFHFWFPEVLQGSSLPVGLLLSTA-MKFP-----PITLLYMTSPSLNSTLLTTMALLSAAVGGWMGLNQTQTRKILA 157
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGllgilTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 158 FSSISHLGWMAI--------IITYSPKLALLNFY--LYTLMTMTVFLSLNSMKA---------LKLSTLMTSWTKTPAVS 218
Cdd:PRK08042  275 YHTLENIGIILLglgagvtgIALEQPALIALGLVggLYHLLNHSLFKSVLFLGAgsvwfrtghRDIEKLGGIGKKMPVIS 354

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1699475775 219 TMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPA 255
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGA 391
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 32-247 2.39e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.71  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  32 AATKYFLVQSAASALVLFSSMTNAWYTGQWDISQMTHPT-----SCVILTTALAMKLGLVPFHFWFPEVLQGSSLPVGLL 106
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 107 LSTAMKFPPI-----TLLYMTSPSLN-STLLTTMALLSAAVGGWMGLNQTQTRKILAFSSISHLG--------WMAIIIT 172
Cdd:PRK08667  243 MSGVMLKVAVyglvrFLMDVLSPELWwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 173 YSPKLALLNF--YLYTLMTMTVFLSLNSMKAlkLSTLMTSWTKT-----------PAVSTMLMLTLLSLAGLPPLTGFLP 239
Cdd:PRK08667  323 GLDTLALLALggALFHSLNHALFKSLLFLTA--GSVVHATGTRNiekmgglvklmPYTSALFLVGAVSIAALPPFNGFAS 400


                  ....*...
gi 1699475775 240 KWLIIQEL 247
Cdd:PRK08667  401 ELLLYESF 408
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 73-245 2.42e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.57  E-value: 2.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  73 VILTTALAMKLGLVPFHFWFPEVLQGSSLPV-----GLLlsTAMKFPPI----TLLYmTSPSLNsTLLTTMALLSAAVGG 143
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVtavfaGLL--TKVGVYAIirthTLLF-PGGGLD-TLLMVVALLTMVVGI 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 144 WMGLNQTQTRKILAFSSISHLGWMAIIITYSPKLALLNFYLYTLMTMTV----FL------------SLNSMKAL-KLST 206
Cdd:PRK12665  289 LGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVqttlFLvvglierqagssSLRRLGGLaKASP 368

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1699475775 207 LMTSWTKTPAVstmlmltllSLAGLPPLTGFLPKWLIIQ 245
Cdd:PRK12665  369 LLAVLFFVPAL---------NLGGIPPFSGFIGKVALLE 398
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 72-245 4.47e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.52  E-value: 4.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775  72 CVILTTALAMKLGLVPFHFWFPEVLQGSSlPVGLLLSTA-MKFPPITLLYMTSP-----SLNSTLLTTMALLSAAVGGWM 145
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPT-PVSALIHAAtMVTAGVFLLIRSSPlfeqaPLALIIVTIVGSLTVFFAATV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699475775 146 GLNQTQTRKILAFSSISHLGWMAIIITYSP-KLALLNFYLYTLMTMTVFLSLNSM-KAL-------KLSTLMTSwtkTPA 216
Cdd:MTH00020  292 GLVQNDLKKVIAYSTCSQLGYMVVACGLSHySISLFHLMNHAFFKALLFLSAGSViHALsdeqdmrKMGGLISF---LPL 368

                         170       180
                  ....*....|....*....|....*....
gi 1699475775 217 VSTMLMLTLLSLAGLPPLTGFLPKWLIIQ 245
Cdd:MTH00020  369 TYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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