NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|169787639|gb|ACA80221|]
View 

NADH dehydrogenase subunt 2 (mitochondrion) [Aprosmictus erythropterus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.59e-148

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 420.77  E-value: 6.59e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787639 321 TNILISTSTSLSTSLLPLSPMILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.59e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 420.77  E-value: 6.59e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787639 321 TNILISTSTSLSTSLLPLSPMILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.74e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 3.74e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   23 SNHWLMAWTGLEINTLTIIPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   94 ---SSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTVLKLPPTTILLLTS--HSLNPT---LLTTMSIMSIAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  165 GGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLTFFTYILMTTSIFL--------TMNTTSTLKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 169787639  233 sWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-298 4.86e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 4.86e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS-----YPPSSL 96
Cdd:COG1007  121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAaalaaGGANSP 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  97 LLTTAI-------AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKL----PPTTILLLTSHSLNP---TLLTTMSIMSI 162
Cdd:COG1007  201 LLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKL----TLLTFFTYILMTTSIFLTM-----NTTSTLKLSTLMTS 233
Cdd:COG1007  281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGL 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787639 234 WTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-297 2.64e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.33  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   23 SNHWLMAWTGLEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPPSS------ 95
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   96 ------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILL-------LTSHSLNPTLLTTMSIMSI 162
Cdd:TIGR01770 201 llllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKL----TLLTFFTYILMTTSIFLTM------NTTSTLKLSTLMT 232
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAG 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787639  233 SWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.59e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 420.77  E-value: 6.59e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 169787639 321 TNILISTSTSLSTSLLPLSPMILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-315 1.83e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 356.04  E-value: 1.83e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTtILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQW 315
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPW 314
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-322 2.63e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 353.07  E-value: 2.63e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ..
gi 169787639 321 TN 322
Cdd:MTH00070 321 TN 322
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-322 7.32e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 321.41  E-value: 7.32e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSN-KMK-QWSPK 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENT 320


                 ....
gi 169787639 319 KPTN 322
Cdd:MTH00105 321 KPMT 324
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-322 7.06e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 267.99  E-value: 7.06e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ..
gi 169787639 321 TN 322
Cdd:MTH00200 321 SN 322
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 23-309 3.33e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 248.31  E-value: 3.33e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPPSSLLLTTAI 102
Cdd:MTH00041  23 SNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 103 AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFS 182
Cdd:MTH00041 103 ALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFS 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 183 SISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLP 262
Cdd:MTH00041 183 SIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLN 262

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 169787639 263 KWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPS 309
Cdd:MTH00041 263 KFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHS 309
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-319 3.70e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.40  E-value: 3.70e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   1 MSPLTKLILTMSLLTGTTITITSNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGqwditqLSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPttiLLLTSHSLNPTLLTTMSIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169787639 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKK 319
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKF 311
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 23-302 9.63e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 161.21  E-value: 9.63e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDitqlsyppSSLLLTTAI 102
Cdd:MTH00144  23 SSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF--------SMSLLLLGL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 103 AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPttILLLTSHSLNPTLLTT---MSIMSIALGGWMGLNQTQTRKIL 179
Cdd:MTH00144  95 CLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGGLNQTQVRALL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 180 AFSSISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTlMTSWTKTPTLNTTLMLTLLSLAGLPPLTG 259
Cdd:MTH00144 173 AYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSLGGLPPFLG 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 169787639 260 FLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144 252 FCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 23-310 7.61e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.78  E-value: 7.61e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDItqlsypPSSLLLTTAI 102
Cdd:MTH00011  25 SNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN------ITALMLLVSL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 103 AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFS 182
Cdd:MTH00011  99 MLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYS 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 183 SISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLP 262
Cdd:MTH00011 179 SIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMP 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 169787639 263 KWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYcSTITLPPNPSN 310
Cdd:MTH00011 259 KLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 23-313 2.51e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.73  E-value: 2.51e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMmnAWFTGQWDITQlsyppSSLLLTTAI 102
Cdd:MTH00197  17 SSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLYLSLL-----SVVLVILGL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 103 AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPttILLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFS 182
Cdd:MTH00197  90 LLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 183 SISHLGWMTIIIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLP 262
Cdd:MTH00197 168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 169787639 263 KWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00197 248 KWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 23-296 5.03e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 109.35  E-value: 5.03e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMMNAWFTGQWDITQ 88
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  89 LSYPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLltSHSLNPTLLTTMSIMSIALGGWM 168
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 169 GLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLTFFTYILMTTSIFLTMNTTSTLK--LSTLMTSWTKTPTLNT 242
Cdd:MTH00196 170 ALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAI 249

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 169787639 243 TLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:MTH00196 250 TLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.74e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 3.74e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   23 SNHWLMAWTGLEINTLTIIPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   94 ---SSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTVLKLPPTTILLLTS--HSLNPT---LLTTMSIMSIAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  165 GGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLTFFTYILMTTSIFL--------TMNTTSTLKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 169787639  233 sWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-298 4.86e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 4.86e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS-----YPPSSL 96
Cdd:COG1007  121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAaalaaGGANSP 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  97 LLTTAI-------AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKL----PPTTILLLTSHSLNP---TLLTTMSIMSI 162
Cdd:COG1007  201 LLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKL----TLLTFFTYILMTTSIFLTM-----NTTSTLKLSTLMTS 233
Cdd:COG1007  281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIEDLAGL 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787639 234 WTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
23-296 1.50e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.50e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQL------SYPPSS 95
Cdd:PRK05777 122 ANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIakaladGSGNSL 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  96 LLLT------TAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKL----PPTTILLLTSHSLNPT---LLTTMSIMSI 162
Cdd:PRK05777 202 LLLFglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIASM 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKL----TLLTFFTYILMTTSIF--LTMNTTSTLKLSTLmTSWT- 235
Cdd:PRK05777 282 LVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvISLLRRKGGEAESI-SDFAg 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169787639 236 ---KTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:PRK05777 361 lskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-297 2.64e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.33  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   23 SNHWLMAWTGLEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPPSS------ 95
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   96 ------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILL-------LTSHSLNPTLLTTMSIMSI 162
Cdd:TIGR01770 201 llllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  163 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKL----TLLTFFTYILMTTSIFLTM------NTTSTLKLSTLMT 232
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAG 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787639  233 SWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 23-296 2.18e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 2.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPPSS----LL 97
Cdd:MTH00199 116 SINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkIL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  98 LTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTtmSIMSIALGGWMGLNQTQTRK 177
Cdd:MTH00199 196 ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKR 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 178 ILAFSSISHLGW----MTIIIIYNPKLTLLTFFTYILMTT---SIFLTMNTTSTLKLSTLMTSwTKTPTLNTTLMLTLLS 250
Cdd:MTH00199 274 LLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLS 352

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 169787639 251 LAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:MTH00199 353 IAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 1.36e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 83.27  E-value: 1.36e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  30 WTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS-----YPPS-----SLLLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarlaeLDPGlllaaFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 100 TAIAIKLGLTPFHFWFPEVL-QGSSLTTALLLSTVLKLPP-------TTILLLTSHSLNPTLLTTMSIMSIALGGWMGLN 171
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 172 QTQTRKILAFSSISHLGWMTIII-IYNPKLT---LLTFFTYILMTTSIFLT----MNTTSTLKLSTLMTSWTKTPTLNTT 243
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLgLGTPLGLagaLFHLLNHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 169787639 244 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:COG0651  373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 23-296 4.45e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.13  E-value: 4.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAI---------EAATKYFLVQAAASALVLFSSMMNAWFTGQ---------- 83
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlgtilsa 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  84 -WDITQLSYPPSSL---LLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLppTTILLLTSHSLNPTLLTTMSI 159
Cdd:MTH00198 287 tLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAI 364

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 160 MSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYILM-------------TTSIFLTMNTTSTLK 226
Cdd:MTH00198 365 ISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalasftvicTLEEFGTRTPTSRQR 444

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 227 ------------LSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGL---- 290
Cdd:MTH00198 445 dgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFAIictc 524


                 ....*....
gi 169787639 291 ---FFYLRL 296
Cdd:MTH00198 525 isaFYYIRI 533
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 1.84e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.80  E-value: 1.84e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  38 LTIIP---LISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQW-----DITQLSYPPSS-----LLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 105 KLGLTPFHFWFPEVLQGSSLTTALLLSTVLK-----------LPpttILLLTSHSLNPTLLTtMSIMSIALGGWMGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 169787639 174 QTRKILAFSSISHLGWMTI 192
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.50e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.43  E-value: 2.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  33 LEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS--YPPSSLLLT------TAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 105 KLGLTPFHFWFPEVLQG-SSLTTALLLSTVLKLPPTTILLLTSHSLNP---------TLLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 175 TRKILAFSSISHLGWMTIIIIYNPKL----TLLTFFTYILMTTSIFLT----MNTTSTLKLSTLMTSWTKTPTLNTTLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLalaaGLLHLLHHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 169787639 247 TLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 4.98e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 60.40  E-value: 4.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  51 RAIEAATKYFLVQAAASALVLFS-SMMNAWFTGQWDI---------TQLSYPPSSLL----LTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 117 EVLQGSSLTTALLLSTVLKLP----PTTILLLTSHSLNP---TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 190 MTI-IIIYNPKLTLLTFFTYilMTTSIFLTMNTTSTLKLSTLMT----------SWTKTPTLNTTLMLTLLSLAGLPPLT 258
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITY--MLFYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 169787639 259 GFLPK 263
Cdd:CHL00049 397 GFFGK 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.52e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 1.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  33 LEINTLTIIPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMMnawFTGQWDITQLSYPPSSL-------------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  99 TTAIAIKLGLTPFHFWFPEVLQG--SSLTTALLLSTVLKLPPTTILLLTSHSLNPTLLTTMSIMSI------ALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 171 NQTQTRKILAFSSISHLGWM------TIIIIYNPKLT----------LLTFFTYILMTTSIFLT----MNTTSTLKLSTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 169787639 231 MTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 7.58e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.87  E-value: 7.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639   50 PRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQW----DITQLSYPPSS-----LLLTTAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  120 QGSSLTTALLLSTVLKLPPTTILLL-------TSHSLNPtLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 169787639  193 II 194
Cdd:TIGR01972 311 GI 312
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 8.21e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.60  E-value: 8.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  50 PRAIEAATKYFLVQAAASALVLF-SSMMNAWFTGQwdiTQLS------YPPSSLLLTTA-------IAIKLGLTPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSaialalITSPSLGLALAlvfviagIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 116 PEVLQGSSLTTALLLSTVLKLPPTTI---LLLTSHSLNPT----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 189 WMTIIIIYNPKLTLLTFFTYILmttsIFLTMN------------TTSTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPP 256
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFYLL----AYLFMNlgafacvilfslRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPP 389


                 ....*..
gi 169787639 257 LTGFLPK 263
Cdd:PRK02504 390 LAGFFGK 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 38-298 1.26e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.08  E-value: 1.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  38 LTIIPLISKshhpRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS---YPPSS--------LLLTTAIAIKL 106
Cdd:PRK08668 135 FMMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISqglINDTStgfalivfLFLLAFGVAKA 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 107 GLTPFHFWFPE-----------VLQGS-SLTTALLLSTVLKLPPTTILLLT-----SHSLNPTLLTTMSIMSIALGGWMG 169
Cdd:PRK08668 211 GIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMA 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 170 LNQTQTRKILAFSSISHLGWmtiIIIYNPKLTLLTF-------FTYILMTTSIFLTMNT----TSTLKLSTLMTSWTKTP 238
Cdd:PRK08668 291 ILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMP 367

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 239 TLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAY 298
Cdd:PRK08668 368 FTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 1.29e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 1.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  38 LTIIP---LISKSHHPRAIEAATKYFLVQAAASALVLFSSM----MNAWFTGQWDITQLSYPPSSLLLTT--------AI 102
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 103 AIKLGLTPFHFWFPEVLQ-----GSSLTTALLLST--------VLKLPPttillLTSHSLNPtLLTTMSIMSIALGGWMG 169
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMgaygllrfSLPLFP-----DASHEFAP-IIITLGVIAIIYGALVA 295

                        170       180
                 ....*....|....*....|....*
gi 169787639 170 LNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK05846 296 LAQTDIKKLIAYSSISHMGFVTLGI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 23-194 1.73e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.37  E-value: 1.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMMNAWFTGQWDITQLS-----Y 91
Cdd:PRK08676 121 SDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAahaslL 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  92 PPSSLLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTVLKLPPTTILLLTS-------HSLNPTLLTTMS 158
Cdd:PRK08676 201 SPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLG 280

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 169787639 159 IMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK08676 281 IFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 3.24e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 48.49  E-value: 3.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  55 AATKYFLVQAAASALVLFSSMMNAWFTGQ--WDITQL---SYPPSSLLLT-----TAIAIKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169787639 125 TTALLLSTVL-KLPPTTI------LLLTSHSLNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 1.66e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 46.62  E-value: 1.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  38 LTIIPL---ISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGqwdITQLSYPP---------SSLLLTTAI--- 102
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSG---ASSFDYEPlrshtlplsTQLLLLAPIlvg 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 103 -AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPTL-------LTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06473 215 fGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKD 294

                        170
                 ....*....|....*.
gi 169787639 175 TRKILAFSSISHLGWM 190
Cdd:PRK06473 295 MKKMVAYSSIGHMGYI 310
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-263 2.02e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.46  E-value: 2.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  81 TGQWDITQL-SYPPSSLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLST---------VLKLPPTtilL 143
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAamvkagiylVARLAPG---F 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 144 LTSHSLNPTLLTtMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYI----LMTTSIFLTM 219
Cdd:PRK12644 261 ADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAALFLVV 339

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 169787639 220 ----NTTSTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 23-192 2.03e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.08  E-value: 2.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  23 SNHWLMAWTGLEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSM---MNAW-FTGQWDI----TQLSYPPS 94
Cdd:PRK06458 127 SNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAAtVMGDGEMailwTELLKHAS 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  95 SL---LLTTAIAI-------KLGLTPFHFWFPE-----------VLQGSSLTTALLLstVLKLppTTILLLTSHSLNP-T 152
Cdd:PRK06458 207 LLdptLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYA--VLRY--YILIDAAIGSDFPgR 282

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 169787639 153 LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 2.05e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.10  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  33 LEINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS-YPPSSL-LLTTAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLAtADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 111 FHFWFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPT--LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 189 WmtiiIIYNPKLTLLTFFTYILMTTSIFLTMNTTSTLKLSTLMtSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELI-SQMLGIGKWIPLTMASFSIAGFPLLAGFVSKVLTLK 357


                 ...
gi 169787639 269 ELT 271
Cdd:PRK07234 358 NLL 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 9.65e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.87  E-value: 9.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  34 EINTLTIIPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSY-----PPSSLLLTTAIAIKLG- 107
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 108 -----LTPFHFWFPEVLQGSSLTTALLLSTVLKLPPTTILL--------LTSHSLNPTLLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 175 TRKILAFSSISHLGWMTIIIIYNPKLT----LLTFFTYILMTTSIFL----TMNTTSTLKLSTLMTSWTKTPTLNTTLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169787639 247 TLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRLAYcsTITLPPNP 308
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-192 1.16e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.99  E-value: 1.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  48 HHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQL-----SYPPSSLLLTTAIAI------KLGLTPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 117 EVLQGSSLTTALLLST---------VLKLPPttILLLTSHSLnpTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:COG1009  236 DAMEGPTPVSALLHAAtmvkagvylLARLSP--LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQL 311


                 ....*
gi 169787639 188 GWMTI 192
Cdd:COG1009  312 GYMFL 316
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.17e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.05  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  48 HHPRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPPS--------SLLLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 114 WFPEVLQGSSLTTALLLSTVLKLPPTTILLLTSHSLNPT-----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 169787639 189 WMTIIIIY 196
Cdd:PRK12649 316 YLMTMYGY 323
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-289 1.47e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.75  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  91 YPPSSLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLS-TVLKLpptTILLLTShsLNP---------TLLTTMSIM 160
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPvlggtplwqTILPLFGGL 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYI----LMTTSIFLTMNT----TSTLKLSTLMT 232
Cdd:PRK12647 269 TMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGG 348

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 169787639 233 SWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTkqEMTTTATIISMLSLLG 289
Cdd:PRK12647 349 LRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-296 4.45e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 4.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  96 LLLTTAIAIKLGLTPFHFWFPEVLQGS-SLTTALLLSTVLKLPPTTI-----------LLLTSHSLNpTLLTTMSIMSIA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 164 LGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLTFFTYI----LMTTSIFLTMNTTS----TLKLSTLMTSWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 169787639 236 KTPTLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIISMLSLLGLFFYLRL 296
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK12650 PRK12650
DUF4040 family protein;
98-263 5.73e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  98 LTTAIAIKLGLT--------PFHFWFPEVLQGSSLTTALL-LSTVLKlppTTILLLTSHSL----NPT---LLTTMSIMS 161
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLhAAAVVK---AGIYLLLRFSPvfhdVAVwnwLLIIVGMIT 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 162 IALGGWMGLNQTQTRKILAFSSISHLGWM-TIIIIYNP-KLTLLTFFT--YILMTTSIFLTM----NTTSTLKLSTLMTS 233
Cdd:PRK12650 283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTRDIRRLGSL 362

                        170       180       190
                 ....*....|....*....|....*....|
gi 169787639 234 WTKTPTLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 7.64e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 7.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 101 AIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTVLKLP-------PTTILLLTSHSLNPTLLtTMSIMSIALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 169787639 173 TQTRKILAFSSISHLGWMTIIII 195
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 2.14e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  55 AATKYFLVQAAASALVLFSSMMNAWFTGQWD------ITQLSYPPSSLLLTTAI----AIKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 125 TTALLLSTVLKLPPTTILLL--------TSHSLNPTLLTTMSImSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIY 196
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRfglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 197 NPKLTLL----TFFTYILMTTSIF-------LTMNTTSTLKLSTLMTSWTKTPTLNTTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07363 317 GTQLSLLgavaQMISHGLILALLFhlvgiveRKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396


                 ...
gi 169787639 266 IIQ 268
Cdd:PRK07363 397 VFQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 4.92e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.56  E-value: 4.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  55 AATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLSYPPSS-----LLLTTAIAIKLGLTPFHFWFPEVLQGS-SLTTAL 128
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169787639 129 LLSTVLKLPPTTILLLTSHSLNP-----TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-268 9.46e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.64  E-value: 9.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639  50 PRAIEAATKYFLVQAAASALVLFSSMMNAWFTGQWDITQLS-----YPPSS-----LLLTTAIAIKLGLTPFHFWFPEVL 119
Cdd:PRK12665 157 AARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAvrldeLPSGTrtalfAVLLVAFGIKAAVFPLSFWLPDSY 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 120 -QGSSLTTAL---LLSTV--LKLPPTTILLLTSHSLNpTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTII 193
Cdd:PRK12665 237 pTAPAPVTAVfagLLTKVgvYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFG 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169787639 194 IIYNPKLTLLTFFTY----ILMTTSIFLTMN-------TTSTLKLSTLMTSwtkTPTLNTTLMLTLLSLAGLPPLTGFLP 262
Cdd:PRK12665 316 IALSTVAGLSGAIYYvahhITVQTTLFLVVGlierqagSSSLRRLGGLAKA---SPLLAVLFFVPALNLGGIPPFSGFIG 392


                 ....*.
gi 169787639 263 KWLIIQ 268
Cdd:PRK12665 393 KVALLE 398
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH