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Conserved domains on  [gi|1697057216|gb|QDH57747|]
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DUF3945 domain-containing protein (plasmid) [Bacteroides xylanisolvens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3945 super family cl16095
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 326-365 2.80e-06

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


The actual alignment was detected with superfamily member pfam13101:

Pssm-ID: 463786  Cd Length: 59  Bit Score: 44.52  E-value: 2.80e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1697057216 326 DKDTNEIVSIKAKDIHIPQKLGGVELTPMQQENLKNGKEI 365
Cdd:pfam13101  10 DKLTNELVAMRVEKIKIPDEIKGVKLTEQQKQDLREGKPV 49
 
Name Accession Description Interval E-value
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 326-365 2.80e-06

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 44.52  E-value: 2.80e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1697057216 326 DKDTNEIVSIKAKDIHIPQKLGGVELTPMQQENLKNGKEI 365
Cdd:pfam13101  10 DKLTNELVAMRVEKIKIPDEIKGVKLTEQQKQDLREGKPV 49
 
Name Accession Description Interval E-value
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 326-365 2.80e-06

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 44.52  E-value: 2.80e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1697057216 326 DKDTNEIVSIKAKDIHIPQKLGGVELTPMQQENLKNGKEI 365
Cdd:pfam13101  10 DKLTNELVAMRVEKIKIPDEIKGVKLTEQQKQDLREGKPV 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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