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Conserved domains on  [gi|169648852|gb|ACA62471|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Drosophila austrosaltans]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-115 5.03e-35

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 116.41  E-value: 5.03e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   4 IIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKF 83
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 169648852  84 SNLLIWTITSIIFILILLIGLYHEWNQGMLNW 115
Cdd:MTH00161  82 SNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-115 5.03e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 116.41  E-value: 5.03e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   4 IIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKF 83
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 169648852  84 SNLLIWTITSIIFILILLIGLYHEWNQGMLNW 115
Cdd:MTH00161  82 SNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-82 8.57e-16

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 66.68  E-value: 8.57e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169648852   19 MVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILK 82
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR 63
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-76 2.83e-15

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 66.30  E-value: 2.83e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169648852   2 FSIIFITLVILLISFIVMVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILP 76
Cdd:COG0838    6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFP 79
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-115 5.03e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 116.41  E-value: 5.03e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   4 IIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKF 83
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 169648852  84 SNLLIWTITSIIFILILLIGLYHEWNQGMLNW 115
Cdd:MTH00161  82 SNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 4.64e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 108.79  E-value: 4.64e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 169648852  81 LKFSNLLIWTITSIIFILILLIGLYHEWNQGMLNWS 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-115 5.57e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 101.22  E-value: 5.57e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 169648852  81 LKFSNLLIWTITSIIFILILLIGLYHEWNQGMLNW 115
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 9-116 1.95e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 84.52  E-value: 1.95e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   9 LVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKFSNLLI 88
Cdd:MTH00012   9 MISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKT 88

                         90       100
                 ....*....|....*....|....*...
gi 169648852  89 WTITSIIFILILLIGLYHEWNQGMLNWS 116
Cdd:MTH00012  89 VVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 2.11e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 79.26  E-value: 2.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKKTLvDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIII 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 169648852  81 LKFSNLLIWTITSIIFILILLIGLYHEWNQGMLNWSN 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 1.68e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 76.86  E-value: 1.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKkTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIII 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPK-VNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 169648852  81 LKFSNllIWTITSIIFILILLIGLYHEWNQGMLNW 115
Cdd:MTH00203  80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-77 5.53e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 75.73  E-value: 5.53e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPM 77
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMT-PDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPL 76
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-115 8.70e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 74.92  E-value: 8.70e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   3 SIIFITLVILLISFIVMVLASILSKkTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILK 82
Cdd:MTH00113   2 NLISMLTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 169648852  83 FSNLLIWTITSIIFILILLIGLYHEWNQGMLNW 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-116 9.05e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 74.98  E-value: 9.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852  34 EKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKFSNLLIWTITSIIFILILLIGLYHEWNQGML 113
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                 ...
gi 169648852 114 NWS 116
Cdd:MTH00106 112 EWT 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-115 3.42e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 71.18  E-value: 3.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   4 IIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPM---III 80
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 169648852  81 LKFSNLLIWTITSIIFILILLIglyHEWNQGMLNW 115
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLI---YEWIQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-82 8.57e-16

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 66.68  E-value: 8.57e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 169648852   19 MVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILK 82
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR 63
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-76 2.83e-15

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 66.30  E-value: 2.83e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169648852   2 FSIIFITLVILLISFIVMVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILP 76
Cdd:COG0838    6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFP 79
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 5-116 5.26e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 60.26  E-value: 5.26e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   5 IFItLVILLISFIVMVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKFS 84
Cdd:PRK06602  13 IFL-IVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREI 90

                         90       100       110
                 ....*....|....*....|....*....|..
gi 169648852  85 NLLIWTITSIIFILILLIGLYhEWNQGMLNWS 116
Cdd:PRK06602  91 GWLGFVEAMIFILVLLVGLVY-LWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 1.10e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 59.72  E-value: 1.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIII 80
Cdd:MTH00055   5 FLGIFILLLFSIGLSTVISGASYIVGVKQ-PDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 169648852  81 LKFSNLLIWTITSIIFILILLIGLYhEWNQGMLNW 115
Cdd:MTH00055  84 YNQIGLFGFWVMYLFLIILTIGLIY-EWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 5-115 1.49e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 56.61  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   5 IFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIILKFS 84
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 169648852  85 NLLIWTITSIIFILILLIGLYhEWNQGMLNW 115
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIY-EWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-115 9.94e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 54.55  E-value: 9.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   2 FSIIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIIL 81
Cdd:MTH00030  10 FSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVF 89

                         90       100       110
                 ....*....|....*....|....*....|....
gi 169648852  82 KFSNLLIWTITSIIFILILLIGLYhEWNQGMLNW 115
Cdd:MTH00030  90 NQLNLFSFWIVYTFLIVLAIGLAY-EWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 7-115 1.84e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 40.81  E-value: 1.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   7 ITLVILLISFIV--MVLASILSKKTLvDREKSTPFECGFEPKSSSRLP--FSLRFFLITIIFLIFDVEIALILPMIIilK 82
Cdd:PRK07928   8 LVLGALAAAFAVvsVVVASLVGPKRY-NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAV--S 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 169648852  83 FSNLLIWTITSIIFILILLIGLY-HEWNQGMLNW 115
Cdd:PRK07928  85 FDALGVFGLVEMALFMLTVFVAYaYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 9-76 6.42e-05

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 39.20  E-value: 6.42e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 169648852   9 LVILLISFIVMVLASILSK---KTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILP 76
Cdd:CHL00022  11 WAFLIISSLIPILAFLISGllaPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP 81
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
2-76 7.61e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 39.34  E-value: 7.61e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 169648852   2 FSIIFITLVILLISFIVMVLASILSKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILP 76
Cdd:PRK07756   9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP 83
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
5-82 1.13e-04

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 38.88  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   5 IFITLVILLISFIVMV-LASILSKKTL---VDREKSTPFECGFEP-KSSSRLpfSLRFFLITIIFLIFDVEIALILPMII 79
Cdd:PRK08489  13 VFVLLVLTFVAFFLTTrLARFISRKLAqknTEKLKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAV 90


                 ...
gi 169648852  80 ILK 82
Cdd:PRK08489  91 DFK 93
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 1-77 1.14e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.73  E-value: 1.14e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169648852   1 MFSIIFITLVILLISFIVMVLASIL--SKKTLVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPM 77
Cdd:MTH00060   1 MLVLLFVFFVFFLLFLVIYFFHSGLwnNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNM 79
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-89 2.84e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 34.87  E-value: 2.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648852   1 MFSIIFITLVILLISFIVMVLASILSKKTlVDREKSTPFECGFEPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIII 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79


                 ....*....
gi 169648852  81 LKFSNLLIW 89
Cdd:MTH00092  80 DFSSLISFF 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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