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Conserved domains on  [gi|1694415283|gb|QDF79005|]
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YlxR family protein [Bacillus licheniformis]

Protein Classification

YlxR family protein( domain architecture ID 10006581)

YlxR family protein may be an RNA-binding protein, similar to Bacillus subtilis YlxR

CATH:  3.30.1230.10
Gene Ontology:  GO:0003723
PubMed:  11679764
SCOP:  4003626

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-91 2.18e-38

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


:

Pssm-ID: 442042  Cd Length: 93  Bit Score: 123.08  E-value: 2.18e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694415283  1 MKSRKKIPLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFD 80
Cdd:COG2740    1 MMKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLEKAVKKRAFARALKAKVPEDLYD 80

                         90
                 ....*....|.
gi 1694415283 81 ELLELAEKENR 91
Cdd:COG2740   81 ELEELLERRAL 91
 
Name Accession Description Interval E-value
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-91 2.18e-38

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


Pssm-ID: 442042  Cd Length: 93  Bit Score: 123.08  E-value: 2.18e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694415283  1 MKSRKKIPLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFD 80
Cdd:COG2740    1 MMKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLEKAVKKRAFARALKAKVPEDLYD 80

                         90
                 ....*....|.
gi 1694415283 81 ELLELAEKENR 91
Cdd:COG2740   81 ELEELLERRAL 91
YlxR pfam04296
Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate ...
 10-84 1.22e-33

Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate metabolic gene expression.


Pssm-ID: 427847  Cd Length: 75  Bit Score: 110.61  E-value: 1.22e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1694415283 10 RKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFDELLE 84
Cdd:pfam04296  1 RKCIGCREMKPKKELIRIVRTPDGEVVLDPTGKLPGRGAYICPDRECLEKAKKKKALERALKTKVPDEVYEELEA 75
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 8-85 7.29e-33

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


Pssm-ID: 238173  Cd Length: 79  Bit Score: 108.57  E-value: 7.29e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1694415283  8 PLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFDELLEL 85
Cdd:cd00279    1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKKLFNRAFKAKVSDSVYDELIEY 78
PRK09190 PRK09190
RNA-binding protein;
8-74 2.10e-13

RNA-binding protein;


Pssm-ID: 236401 [Multi-domain]  Cd Length: 220  Bit Score: 62.29  E-value: 2.10e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1694415283   8 PLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQI 74
Cdd:PRK09190   15 NERRCIVTREVGPPDELIRFVVGPDGQVVPDLKRKLPGRGCWVSADRAAVEKAVAKKLFARAAKADV 81
 
Name Accession Description Interval E-value
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-91 2.18e-38

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


Pssm-ID: 442042  Cd Length: 93  Bit Score: 123.08  E-value: 2.18e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694415283  1 MKSRKKIPLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFD 80
Cdd:COG2740    1 MMKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLEKAVKKRAFARALKAKVPEDLYD 80

                         90
                 ....*....|.
gi 1694415283 81 ELLELAEKENR 91
Cdd:COG2740   81 ELEELLERRAL 91
YlxR pfam04296
Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate ...
 10-84 1.22e-33

Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate metabolic gene expression.


Pssm-ID: 427847  Cd Length: 75  Bit Score: 110.61  E-value: 1.22e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1694415283 10 RKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFDELLE 84
Cdd:pfam04296  1 RKCIGCREMKPKKELIRIVRTPDGEVVLDPTGKLPGRGAYICPDRECLEKAKKKKALERALKTKVPDEVYEELEA 75
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 8-85 7.29e-33

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


Pssm-ID: 238173  Cd Length: 79  Bit Score: 108.57  E-value: 7.29e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1694415283  8 PLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQIDDQIFDELLEL 85
Cdd:cd00279    1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKKLFNRAFKAKVSDSVYDELIEY 78
PRK09190 PRK09190
RNA-binding protein;
8-74 2.10e-13

RNA-binding protein;


Pssm-ID: 236401 [Multi-domain]  Cd Length: 220  Bit Score: 62.29  E-value: 2.10e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1694415283   8 PLRKCVVTGEMKPKKELIRVVRSKEGEVSVDPTGKKNGRGAYLTLDKDVILTAKKRNSLANQLQAQI 74
Cdd:PRK09190   15 NERRCIVTREVGPPDELIRFVVGPDGQVVPDLKRKLPGRGCWVSADRAAVEKAVAKKLFARAAKADV 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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