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Conserved domains on  [gi|1691925292|gb|TPH83531|]
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cbb3-type cytochrome oxidase assembly protein CcoS [Helicobacter pylori]

Protein Classification

cbb3-type cytochrome oxidase assembly protein( domain architecture ID 10017472)

cbb3-type cytochrome oxidase assembly protein CcoS/FixS is essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ccoS TIGR00847
cytochrome oxidase maturation protein, cbb3-type; CcoS from Rhodobacter capsulatus has been ...
 3-53 9.90e-21

cytochrome oxidase maturation protein, cbb3-type; CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair]


:

Pssm-ID: 129927  Cd Length: 51  Bit Score: 75.92  E-value: 9.90e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1691925292  3 TEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNE 53
Cdd:TIGR00847  1 MEILTILIPISLLLGGVGLVAFLWSLKSGQYDDLKGAAWRILGDYDDDPNQ 51
 
Name Accession Description Interval E-value
ccoS TIGR00847
cytochrome oxidase maturation protein, cbb3-type; CcoS from Rhodobacter capsulatus has been ...
 3-53 9.90e-21

cytochrome oxidase maturation protein, cbb3-type; CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair]


Pssm-ID: 129927  Cd Length: 51  Bit Score: 75.92  E-value: 9.90e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1691925292  3 TEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNE 53
Cdd:TIGR00847  1 MEILTILIPISLLLGGVGLVAFLWSLKSGQYDDLKGAAWRILGDYDDDPNQ 51
FixS COG3197
Cytochrome oxidase maturation protein, CcoS/FixS family [Posttranslational modification, ...
 4-62 1.06e-14

Cytochrome oxidase maturation protein, CcoS/FixS family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442430  Cd Length: 60  Bit Score: 61.05  E-value: 1.06e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1691925292  4 EILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAVLQEKRQE 62
Cdd:COG3197    2 EILYLLIPLSLLLGLLALAAFIWAVKSGQFDDLEGPAVRILFDDDDPKPPPKEKKEKKK 60
FixS pfam03597
Cytochrome oxidase maturation protein cbb3-type;
4-46 6.11e-14

Cytochrome oxidase maturation protein cbb3-type;


Pssm-ID: 460984  Cd Length: 44  Bit Score: 58.61  E-value: 6.11e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1691925292  4 EILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYD 46
Cdd:pfam03597  1 SILYLLIPLSLVLGLIALAAFLWAVKSGQFDDLEGPAHRILFD 43
 
Name Accession Description Interval E-value
ccoS TIGR00847
cytochrome oxidase maturation protein, cbb3-type; CcoS from Rhodobacter capsulatus has been ...
 3-53 9.90e-21

cytochrome oxidase maturation protein, cbb3-type; CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair]


Pssm-ID: 129927  Cd Length: 51  Bit Score: 75.92  E-value: 9.90e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1691925292  3 TEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNE 53
Cdd:TIGR00847  1 MEILTILIPISLLLGGVGLVAFLWSLKSGQYDDLKGAAWRILGDYDDDPNQ 51
FixS COG3197
Cytochrome oxidase maturation protein, CcoS/FixS family [Posttranslational modification, ...
 4-62 1.06e-14

Cytochrome oxidase maturation protein, CcoS/FixS family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442430  Cd Length: 60  Bit Score: 61.05  E-value: 1.06e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1691925292  4 EILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAVLQEKRQE 62
Cdd:COG3197    2 EILYLLIPLSLLLGLLALAAFIWAVKSGQFDDLEGPAVRILFDDDDPKPPPKEKKEKKK 60
FixS pfam03597
Cytochrome oxidase maturation protein cbb3-type;
4-46 6.11e-14

Cytochrome oxidase maturation protein cbb3-type;


Pssm-ID: 460984  Cd Length: 44  Bit Score: 58.61  E-value: 6.11e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1691925292  4 EILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYD 46
Cdd:pfam03597  1 SILYLLIPLSLVLGLIALAAFLWAVKSGQFDDLEGPAHRILFD 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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