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Conserved domains on  [gi|1691737631|gb|QDF20842|]
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cytochrome b, partial (mitochondrion) [Merops hirundineus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 679.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   1 MAPNPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  81 RNIHANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQT 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 161 IVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 241 TALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1691737631 321 LSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 679.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   1 MAPNPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  81 RNIHANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQT 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 161 IVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 241 TALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1691737631 321 LSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-321 2.01e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 345.24  E-value: 2.01e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  19 LIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFFICAFLH 98
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  99 IGRGYYYGSYlfKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNP 174
Cdd:COG1290   107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 175 TLTRFFALH-FLLPFMIAGLTLIHLTFLHESGSNNPLGI----VSHCDKIPFHPYFSLKDILGFMLMLLLLTALALFTPt 249
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1691737631 250 lLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPL 321
Cdd:COG1290   264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 4.16e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 291.58  E-value: 4.16e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  10 PLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  90 FFFICAFLHIGRGYYYGSY--LFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1691737631 168 GFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.50e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.15  E-value: 2.50e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  19 LIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFFICAFLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  99 IGRGYYYG--SYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1691737631 177 TRFFALHFLLPFMIAGLTLIHLTFLHESG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 248-319 7.70e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 7.70e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1691737631 248 PTLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFR 319
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 679.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   1 MAPNPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  81 RNIHANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQT 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 161 IVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 241 TALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1691737631 321 LSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353
CYTB MTH00100
cytochrome b; Provisional
 4-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 618.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   4 NPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNI 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  84 HANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVE 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 164 WAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTAL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 244 ALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350
                  ....*....|....*....|....*....|
gi 1691737631 324 LLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQ 352
CYTB MTH00131
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 613.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   1 MApNPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLI 80
Cdd:MTH00131    1 MA-SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  81 RNIHANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQT 160
Cdd:MTH00131   80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 161 IVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLL 240
Cdd:MTH00131  160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 241 TALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRP 320
Cdd:MTH00131  240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1691737631 321 LSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00131  320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQ 352
CYTB MTH00074
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 606.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   1 MAPNPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLI 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  81 RNIHANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQT 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 161 IVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 241 TALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1691737631 321 LSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQ 353
CYTB MTH00191
cytochrome b; Provisional
 6-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 591.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   6 RKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHA 85
Cdd:MTH00191    2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  86 NGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWA 165
Cdd:MTH00191   82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 166 WGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 246 FTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLL 325
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                         330       340
                  ....*....|....*....|....*...
gi 1691737631 326 FWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00191  322 FWLWVANFILLTWLGGQPVEDPFILLGQ 349
CYTB MTH00156
cytochrome b; Provisional
 12-353 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 582.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  12 LKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  92 FICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 172 DNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALALFTPTLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 252 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLLFWTLTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340
                  ....*....|....*....|..
gi 1691737631 332 TLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQ 342
CYTB MTH00145
cytochrome b; Provisional
 6-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 561.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   6 RKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHA 85
Cdd:MTH00145    6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  86 NGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWA 165
Cdd:MTH00145   86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 166 WGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:MTH00145  166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 246 FTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLL 325
Cdd:MTH00145  246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325

                         330       340
                  ....*....|....*....|....*...
gi 1691737631 326 FWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00145  326 FWIFVGNFFILTWIGACPVEEPYETIGQ 353
CYTB MTH00034
cytochrome b; Validated
 6-353 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 558.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   6 RKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHA 85
Cdd:MTH00034    5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  86 NGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWA 165
Cdd:MTH00034   85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 166 WGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:MTH00034  165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 246 FTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLL 325
Cdd:MTH00034  245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                         330       340
                  ....*....|....*....|....*...
gi 1691737631 326 FWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00034  325 FWLLIATFFILTWIGSQPVEYPFILLGQ 352
CYTB MTH00016
cytochrome b; Validated
 6-353 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 538.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   6 RKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHA 85
Cdd:MTH00016    6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  86 NGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWA 165
Cdd:MTH00016   86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 166 WGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:MTH00016  166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 246 FTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLL 325
Cdd:MTH00016  246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325

                         330       340
                  ....*....|....*....|....*...
gi 1691737631 326 FWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00016  326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353
CYTB MTH00022
cytochrome b; Validated
 6-353 2.87e-169

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 476.50  E-value: 2.87e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   6 RKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHA 85
Cdd:MTH00022    4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  86 NGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWA 165
Cdd:MTH00022   84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 166 WGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:MTH00022  164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 246 FTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLL 325
Cdd:MTH00022  244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323

                         330       340
                  ....*....|....*....|....*...
gi 1691737631 326 FWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00022  324 FWFLIVDFILLTWIGSQVVEEPFILIGQ 351
CYTB MTH00053
cytochrome b; Provisional
 1-353 4.10e-168

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 473.42  E-value: 4.10e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   1 MAPNPRKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLI 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  81 RNIHANGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQT 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 161 IVEWAWGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 241 TALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1691737631 321 LSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQ 353
CYTB MTH00224
cytochrome b; Provisional
 6-353 4.86e-164

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 463.24  E-value: 4.86e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631   6 RKSHPLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHA 85
Cdd:MTH00224    6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  86 NGASFFFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWA 165
Cdd:MTH00224   86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 166 WGGFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:MTH00224  166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 246 FTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLL 325
Cdd:MTH00224  246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325

                         330       340
                  ....*....|....*....|....*...
gi 1691737631 326 FWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00224  326 FWLLVTSWAILTWIGGRPVEDPFEGIGQ 353
CYTB MTH00033
cytochrome b; Provisional
 11-353 2.56e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 380.44  E-value: 2.56e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  11 LLKIVNSsLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASF 90
Cdd:MTH00033    8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  91 FFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFS 170
Cdd:MTH00033   87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 171 VDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALALF--TP 248
Cdd:MTH00033  167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 249 TLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLLFWT 328
Cdd:MTH00033  247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326

                         330       340
                  ....*....|....*....|....*.
gi 1691737631 329 LTTTLLILTWIGSQPV-EQPFIIIGQ 353
Cdd:MTH00033  327 IVGDFIILTWIGSAPAgADPYVLIGR 352
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-321 2.01e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 345.24  E-value: 2.01e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  19 LIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFFICAFLH 98
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  99 IGRGYYYGSYlfKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNP 174
Cdd:COG1290   107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 175 TLTRFFALH-FLLPFMIAGLTLIHLTFLHESGSNNPLGI----VSHCDKIPFHPYFSLKDILGFMLMLLLLTALALFTPt 249
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1691737631 250 lLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPL 321
Cdd:COG1290   264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336
CYTB MTH00086
cytochrome b; Provisional
 13-353 1.42e-113

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 334.22  E-value: 1.42e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  13 KIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  93 ICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 173 NPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGfMLMLLLLTALALFTPTLLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 253 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSkqrAMTFRPLSQLLFWTLTTT 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                         330       340
                  ....*....|....*....|.
gi 1691737631 333 LLILTWIGSQPVEQPFIIIGQ 353
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQ 337
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 4.16e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 291.58  E-value: 4.16e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  10 PLLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  90 FFFICAFLHIGRGYYYGSY--LFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1691737631 168 GFSVDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-306 5.90e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 263.38  E-value: 5.90e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  11 LLKIVNSSLIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASF 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  91 FFICAFLHIGRGYYYGSYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFS 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 171 VDNPTLTRFFALHFLLPFMIAGLTLIHLTFLHESGSNNPLGIV-SHCDKIPFHPYFSLKDILGFMLMLLLLTALALFTPT 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSnGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1691737631 250 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASILVLFLVP 306
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP 296
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.50e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.15  E-value: 2.50e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  19 LIDLPTPSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFFICAFLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  99 IGRGYYYG--SYLFKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1691737631 177 TRFFALHFLLPFMIAGLTLIHLTFLHESG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-353 2.93e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 151.64  E-value: 2.93e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 208 NPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALALFTPTLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1691737631 288 KLGGVLALAASILVLFLVPFLHKSKQRAmTFRPLSQLLFWTLTTTLLILTWIGSQPVEQPFIIIGQ 353
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQ 145
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 4.31e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 139.30  E-value: 4.31e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  89 SFFFICAFLHIGRGYYYGSYLFKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 167 GGFSVDNPTLTRFFALHF-LLPFMIAGLTLIHLTFLHESGSNNPLGIVSHCDKIPFHPYFSLKDILGFMLMLLLLTALAL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1691737631 246 FTPTLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 1.90e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.07  E-value: 1.90e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  34 FGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFFICAFLHIGRGYYYGSYlfKE- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGY--KKp 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 113 ---TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFFALH-FLLPF 188
Cdd:PRK03735  122 relNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPW 201

                         170       180
                  ....*....|....*....|..
gi 1691737631 189 MIAGLTLIHLTFLHESGSNNPL 210
Cdd:PRK03735  202 ALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-353 3.79e-37

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 129.14  E-value: 3.79e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFRPLSQLLFWTLTTTLLILTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|....*
gi 1691737631 339 IGSQPVEQPFIIIGQ 353
Cdd:pfam00032  81 LGKQPPTGPYTLLGQ 95
petB CHL00070
cytochrome b6
 25-210 2.00e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.99  E-value: 2.00e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631  25 PSNISAWWNFGSLLGICLTIQILTGLLLATHYTADTSLAFSSVAHTCRDVQYGWLIRNIHANGASFFFICAFLHIGRGYY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691737631 105 YGSylFKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTIVEWAWGGFSVDNPTLTRFF 180
Cdd:CHL00070  107 TGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1691737631 181 ALH-FLLPFMIAGLTLIHLTFLHESGSNNPL 210
Cdd:CHL00070  185 SLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 248-308 3.40e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 3.40e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1691737631 248 PTLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFL 308
Cdd:CHL00058   59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFL 114
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 248-308 1.27e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.12  E-value: 1.27e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1691737631 248 PTLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFL 308
Cdd:COG5679    60 PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 248-319 7.70e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.81  E-value: 7.70e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1691737631 248 PTLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLVPFLHKSKQRAMTFR 319
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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