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Conserved domains on  [gi|1686978028|gb|QDD55939|]
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cytochrome b, partial (mitochondrion) [Crax rubra]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 697.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00119   40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00119  120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00119  200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00119  280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILY 359

                         330       340
                  ....*....|....*....|.
gi 1686978028 321 FATLLLLFPIIGALENKMLYH 341
Cdd:MTH00119  360 FTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 697.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00119   40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00119  120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00119  200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00119  280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILY 359

                         330       340
                  ....*....|....*....|.
gi 1686978028 321 FATLLLLFPIIGALENKMLYH 341
Cdd:MTH00119  360 FTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-335 1.18e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 373.36  E-value: 1.18e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWN 76
Cdd:COG1290    48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWI 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  77 TGIILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFAIAGLT 155
Cdd:COG1290   126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 156 VIHLTFLHESGSNNPLG----LTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNllGDPENFTPANPLVTPPHIK 231
Cdd:COG1290   206 VLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 232 PEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVehPF 309
Cdd:COG1290   284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IA 361

                         330       340
                  ....*....|....*....|....*.
gi 1686978028 310 IIIGQLASLTYFATLLLLFPIIGALE 335
Cdd:COG1290   362 TLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-168 1.02e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 246.90  E-value: 1.02e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTG 78
Cdd:cd00284    31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  79 IILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIH 158
Cdd:cd00284   111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILH 190

                         170
                  ....*....|
gi 1686978028 159 LTFLHESGSN 168
Cdd:cd00284   191 LLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-166 2.05e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 214.94  E-value: 2.05e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   2 CLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGI 79
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  80 ILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHL 159
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182


                  ....*..
gi 1686978028 160 TFLHESG 166
Cdd:pfam00033 183 LFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 220-287 1.12e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 1.12e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1686978028 220 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTF-RPLSQLLF 287
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 697.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00119   40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00119  120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00119  200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00119  280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILY 359

                         330       340
                  ....*....|....*....|.
gi 1686978028 321 FATLLLLFPIIGALENKMLYH 341
Cdd:MTH00119  360 FTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-339 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 631.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00131   39 LCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00131  119 LLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00131  199 FLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00131  279 AILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLY 358

                         330
                  ....*....|....*....
gi 1686978028 321 FATLLLLFPIIGALENKML 339
Cdd:MTH00131  359 FSLFLVLMPLAGWLENKAL 377
CYTB MTH00100
cytochrome b; Provisional
 1-339 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 622.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00100   39 ICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGII 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00100  119 LLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00100  199 FLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAY 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00100  279 AILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILY 358

                         330
                  ....*....|....*....
gi 1686978028 321 FATLLLLFPIIGALENKML 339
Cdd:MTH00100  359 FLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-339 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 608.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00074   40 VCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00074  120 LLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00074  200 FLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00074  280 AILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILY 359

                         330
                  ....*....|....*....
gi 1686978028 321 FATLLLLFPIIGALENKML 339
Cdd:MTH00074  360 FLLFIIIIPLTGWLENKLL 378
CYTB MTH00191
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 584.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00191   36 LCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVI 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00191  116 LLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLL 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00191  196 FLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAY 275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00191  276 AILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLY 355

                         330
                  ....*....|
gi 1686978028 321 FATLLLLFPI 330
Cdd:MTH00191  356 FFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-328 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 578.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00156   29 LCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVI 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00156  109 ILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00156  189 FLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAY 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00156  269 AILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILY 348


                  ....*...
gi 1686978028 321 FATLLLLF 328
Cdd:MTH00156  349 FLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 566.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00145   40 LCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVT 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00145  120 LLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00145  200 FLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00145  280 AILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLY 359

                         330       340
                  ....*....|....*....|.
gi 1686978028 321 FaTLLLLFPIIGALENKMLYH 341
Cdd:MTH00145  360 F-LFFLILPLVQKLWDNILDY 379
CYTB MTH00034
cytochrome b; Validated
 1-340 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 552.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00034   39 LCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVI 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00034  119 LFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLL 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00034  199 FLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAY 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00034  279 AILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLY 358

                         330       340
                  ....*....|....*....|
gi 1686978028 321 FATLLLLFPIIGALENKMLY 340
Cdd:MTH00034  359 FSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-340 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 523.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00016   40 LCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00016  120 LLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLL 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00016  200 FLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00016  280 AILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFY 359

                         330       340
                  ....*....|....*....|
gi 1686978028 321 FaTLLLLFPIIGALENKMLY 340
Cdd:MTH00016  360 F-FYFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-339 2.16e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 483.82  E-value: 2.16e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00053   40 FCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00053  120 IFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLI 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00053  200 ALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00053  280 AILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFY 359

                         330
                  ....*....|....*....
gi 1686978028 321 FATLLLLFPIIGALENKML 339
Cdd:MTH00053  360 FAYFLILMPLAGYLENKLL 378
CYTB MTH00022
cytochrome b; Validated
 1-340 4.91e-170

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 477.66  E-value: 4.91e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00022   38 LCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVV 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00022  118 IFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLI 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00022  198 YLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAY 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00022  278 AILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFY 357

                         330       340
                  ....*....|....*....|
gi 1686978028 321 FATLLLLFPIIGALENKMLY 340
Cdd:MTH00022  358 FFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-339 1.54e-159

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 451.30  E-value: 1.54e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00224   40 LCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00224  120 LFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIM 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00224  200 FLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMY 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 241 AILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTY 320
Cdd:MTH00224  280 AILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILY 359

                         330
                  ....*....|....*....
gi 1686978028 321 FaTLLLLFPIIGALENKML 339
Cdd:MTH00224  360 F-SYFIISPAISKLWDDLL 377
CYTB MTH00033
cytochrome b; Provisional
 1-336 6.77e-130

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 376.20  E-value: 6.77e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGII 80
Cdd:MTH00033   36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  81 LLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLT 160
Cdd:MTH00033  116 IFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLL 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 161 FLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIpLLTLVFFHP---NLLGDPENFTPANPLVTPPHIKPEWYFL 237
Cdd:MTH00033  196 TLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFG-VFVIIGIEPrieTLLQDPENFIQANPLVTPVHIQPEWYFL 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 238 FAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPV-EHPFIIIGQLA 316
Cdd:MTH00033  275 FAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIA 354

                         330       340
                  ....*....|....*....|
gi 1686978028 317 SLTYFATLLLLFPIIGALEN 336
Cdd:MTH00033  355 TIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-335 1.18e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 373.36  E-value: 1.18e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWN 76
Cdd:COG1290    48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWI 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  77 TGIILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFAIAGLT 155
Cdd:COG1290   126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 156 VIHLTFLHESGSNNPLG----LTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNllGDPENFTPANPLVTPPHIK 231
Cdd:COG1290   206 VLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 232 PEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVehPF 309
Cdd:COG1290   284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IA 361

                         330       340
                  ....*....|....*....|....*.
gi 1686978028 310 IIIGQLASLTYFATLLLLFPIIGALE 335
Cdd:COG1290   362 TLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 3-328 4.90e-110

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 324.59  E-value: 4.90e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   3 LMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGIILL 82
Cdd:MTH00086   30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  83 LVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLTFL 162
Cdd:MTH00086  110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 163 HESGSNNPLGLTSDCDKIPFHPYFSLKDILGFsCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 242
Cdd:MTH00086  190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 243 LRSIPNKLGGVLALAASVLILFLIPFLHKSkqrSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASLTYFA 322
Cdd:MTH00086  269 LRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFF 345


                  ....*.
gi 1686978028 323 TLLLLF 328
Cdd:MTH00086  346 LILLML 351
CYTB MTH00046
cytochrome b; Validated
 6-328 5.60e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 265.69  E-value: 5.60e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   6 QILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGIILLLVL 85
Cdd:MTH00046   35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  86 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHLTFLHES 165
Cdd:MTH00046  115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 166 GSNNPL---GLTSDCdkIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 242
Cdd:MTH00046  195 GSSNPLfssNGYSDV--VYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAM 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 243 LRSIPNKLGGvLALAASVLILFLIPflhkSKQRSMTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLASltyFA 322
Cdd:MTH00046  273 LRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFS---VL 344


                  ....*.
gi 1686978028 323 TLLLLF 328
Cdd:MTH00046  345 MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-168 1.02e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 246.90  E-value: 1.02e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTG 78
Cdd:cd00284    31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  79 IILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIH 158
Cdd:cd00284   111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILH 190

                         170
                  ....*....|
gi 1686978028 159 LTFLHESGSN 168
Cdd:cd00284   191 LLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-166 2.05e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 214.94  E-value: 2.05e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   2 CLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGI 79
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  80 ILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLTVIHL 159
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182


                  ....*..
gi 1686978028 160 TFLHESG 166
Cdd:pfam00033 183 LFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 169-316 1.33e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 183.23  E-value: 1.33e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 169 NPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVFFHPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 248
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1686978028 249 KLGGVLALAASVLILFLIPFLHKSKQRSmTFRPLSQLLFWSLTANLLILTWVGSQPVEHPFIIIGQLA 316
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
220-320 8.77e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 8.77e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 220 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTFRPLSQLLFWSLTANLLILTW 299
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1686978028 300 VGSQPVEHPFIIIGQLASLTY 320
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
50-215 1.80e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.78  E-value: 1.80e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  50 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGIILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 127
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 128 GGFSVDNPTLTRFFALHF-LLPFAIAGLTVIHLTFLHESGSNNPLGLTSDCDKIPFHPYFSLKDILGFSCMFIPLLTLVF 206
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1686978028 207 FHPNLLGDP 215
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-171 6.22e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.14  E-value: 6.22e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTG 78
Cdd:PRK03735   50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  79 IILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFAIAGLTVI 157
Cdd:PRK03735  130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209

                         170
                  ....*....|....
gi 1686978028 158 HLTFLHESGSNNPL 171
Cdd:PRK03735  210 HFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-171 1.09e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 1.09e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028   1 ICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTG 78
Cdd:CHL00070   42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028  79 IILLLVLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFAIAGLTVI 157
Cdd:CHL00070  122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLM 201

                         170
                  ....*....|....
gi 1686978028 158 HLTFLHESGSNNPL 171
Cdd:CHL00070  202 HFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 220-287 2.06e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.25  E-value: 2.06e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1686978028 220 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHK-SKQRSMTFRPLSQLLF 287
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 204-287 1.53e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.73  E-value: 1.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1686978028 204 LVFFHPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTF-RPL 282
Cdd:COG5679    55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPV 129


                  ....*
gi 1686978028 283 SQLLF 287
Cdd:COG5679   130 ATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 220-287 1.12e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 1.12e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1686978028 220 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRSMTF-RPLSQLLF 287
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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