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Conserved domains on  [gi|1682256351|gb|QDB63527|]
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cytochrome b, partial (mitochondrion) [Peromyscus maniculatus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-126 1.33e-98

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 287.30  E-value: 1.33e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00100   27 ISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGS 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00100  107 YLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSA 152
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-126 1.33e-98

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 287.30  E-value: 1.33e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00100   27 ISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGS 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00100  107 YLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSA 152
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-126 5.41e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 177.95  E-value: 5.41e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:cd00284    19 ISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGS 98

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1682256351  81 Y--TFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:cd00284    99 YkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSA 146
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-126 2.29e-54

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 174.59  E-value: 2.29e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   4 WWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTF 83
Cdd:COG1290    39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKK 118

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1682256351  84 ME--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:COG1290   119 PRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGA 163
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-126 1.00e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.09  E-value: 1.00e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYG- 79
Cdd:pfam00033  10 LSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGg 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1682256351  80 -SYTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:pfam00033  90 fSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSA 137
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-126 1.33e-98

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 287.30  E-value: 1.33e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00100   27 ISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGS 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00100  107 YLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSA 152
CYTB MTH00156
cytochrome b; Provisional
 1-126 1.58e-88

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 260.87  E-value: 1.58e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00156   17 ISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGS 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00156   97 YKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSA 142
CYTB MTH00131
cytochrome b; Provisional
 1-126 2.45e-88

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 261.13  E-value: 2.45e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00131   27 ISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGS 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00131  107 YLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSA 152
CYTB MTH00119
cytochrome b; Provisional
 1-126 5.11e-88

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 260.22  E-value: 5.11e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00119   28 ISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00119  108 YLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSA 153
CYTB MTH00074
cytochrome b; Provisional
 1-126 1.36e-86

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 256.53  E-value: 1.36e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00074   28 LSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00074  108 YMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSA 153
CYTB MTH00191
cytochrome b; Provisional
 1-126 2.75e-84

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 250.22  E-value: 2.75e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00191   24 ISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGS 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00191  104 YLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSA 149
CYTB MTH00145
cytochrome b; Provisional
 1-126 1.54e-79

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 238.65  E-value: 1.54e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00145   28 LSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00145  108 YLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSA 153
CYTB MTH00034
cytochrome b; Validated
 1-126 1.34e-77

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 233.83  E-value: 1.34e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00034   27 LSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGS 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00034  107 YVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSA 152
CYTB MTH00016
cytochrome b; Validated
 1-126 2.90e-76

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 230.33  E-value: 2.90e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00016   28 LSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00016  108 YFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSA 153
CYTB MTH00022
cytochrome b; Validated
 1-126 3.59e-66

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 204.55  E-value: 3.59e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00022   26 ISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGG 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00022  106 YLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSA 151
CYTB MTH00224
cytochrome b; Provisional
 1-126 2.26e-65

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 202.46  E-value: 2.26e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00224   28 ISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00224  108 FNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSA 153
CYTB MTH00053
cytochrome b; Provisional
 1-126 9.26e-64

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 198.39  E-value: 9.26e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00053   28 ISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00053  108 YTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSA 153
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-126 5.41e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 177.95  E-value: 5.41e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:cd00284    19 ISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGS 98

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1682256351  81 Y--TFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:cd00284    99 YkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSA 146
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-126 2.29e-54

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 174.59  E-value: 2.29e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   4 WWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTF 83
Cdd:COG1290    39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKK 118

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1682256351  84 ME--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:COG1290   119 PRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGA 163
CYTB MTH00033
cytochrome b; Provisional
 1-126 9.36e-54

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 172.82  E-value: 9.36e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00033   24 ISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGG 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00033  104 YSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSA 149
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-126 1.00e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.09  E-value: 1.00e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYG- 79
Cdd:pfam00033  10 LSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGg 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1682256351  80 -SYTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:pfam00033  90 fSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSA 137
CYTB MTH00086
cytochrome b; Provisional
 1-126 1.97e-46

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 153.17  E-value: 1.97e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00086   16 LSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMS 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:MTH00086   96 YRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSV 141
CYTB MTH00046
cytochrome b; Validated
 1-124 3.22e-30

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 110.84  E-value: 3.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   1 ISSWWNFGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGS 80
Cdd:MTH00046   18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1682256351  81 YTFMETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLL 124
Cdd:MTH00046   98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIV 141
PRK03735 PRK03735
cytochrome b6; Provisional
 7-126 1.75e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 98.25  E-value: 1.75e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   7 FGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFME- 85
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1682256351  86 -TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEA 165
petB CHL00070
cytochrome b6
 7-121 1.24e-18

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 77.45  E-value: 1.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1682256351   7 FGSLLGVCLMIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFME- 85
Cdd:CHL00070   36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1682256351  86 -TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVIT 121
Cdd:CHL00070  116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVT 152
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
62-126 3.23e-14

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 64.96  E-value: 3.23e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1682256351  62 SMFFICLFLHVGRGMYYGSYTFME--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSA 126
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSS 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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