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Conserved domains on  [gi|168177007]
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Chain A, SYNTHETIC CONSENSUS TPR PROTEIN

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 708416)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-134 7.67e-51

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 170.56  E-value: 7.67e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG3914  158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-134 7.67e-51

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 170.56  E-value: 7.67e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG3914  158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 6-134 5.30e-31

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 109.78  E-value: 5.30e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85
Cdd:NF040959  42 NKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDY 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 168177007  86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:NF040959 122 EKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDP 170
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1-133 1.59e-29

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 105.92  E-value: 1.59e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:NF040959  71 VEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALD 150

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:NF040959 151 GLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1-136 1.19e-24

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 93.94  E-value: 1.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR02521  31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007   81 KQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 8-134 7.13e-19

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 81.28  E-value: 7.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA--WYNL---------- 75
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESLlkvnrywlli 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   76 --GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:PRK11447  356 qqGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 13-100 2.27e-18

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 77.98  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Cdd:NF033920 168 QTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAA 247


                 ....*...
gi 168177007  93 QKALELDP 100
Cdd:NF033920 248 ECALALAP 255
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 47-134 2.27e-18

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 77.98  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Cdd:NF033920 168 QTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAA 247


                 ....*...
gi 168177007 127 QKALELDP 134
Cdd:NF033920 248 ECALALAP 255
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 3-66 7.05e-15

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 68.73  E-value: 7.05e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007   3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:NF033920 192 AYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR_12 pfam13424
Tetratricopeptide repeat;
69-135 4.98e-13

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 60.09  E-value: 4.98e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 39-132 5.01e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 61.11  E-value: 5.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQg 117
Cdd:cd24142    4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSGGE- 82

                         90
                 ....*....|....*
gi 168177007 118 dydEAIEYYQKALEL 132
Cdd:cd24142   83 ---EALQYYEKGIEI 94
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1-32 8.90e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 50.52  E-value: 8.90e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 168177007     1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 32
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 6-131 1.27e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.84  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPRSAE- 70
Cdd:NF040586 525 NLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARDLRELGRYAEALDLLEEALEryrevlGGPDHPDt 604

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007  71 ---AWyNLGNAYYKQGDYDEAIEYYQKALEL----------DPRSAEAwyNLGNAYYKQGDYDEAIEYYQKALE 131
Cdd:NF040586 605 lraAK-SLAVALRRAGRLEEALELAEDTYERyrrrfgpdhpDTLAAAL--SLANDLRALGDADEARELAREVLD 675
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 15-124 1.72e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.46  E-value: 1.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  15 GDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNA 78
Cdd:NF040586 492 GRFREALELDEETLERhrrvfgedHPRTLRAANNLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARD 571

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007  79 YYKQGDYDEAIEYYQKALE------LDPRSAE----AWyNLGNAYYKQGDYDEAIE 124
Cdd:NF040586 572 LRELGRYAEALDLLEEALEryrevlGGPDHPDtlraAK-SLAVALRRAGRLEEALE 626
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 6-131 2.32e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.07  E-value: 2.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALE----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPR 67
Cdd:NF040586 439 HLANALRSLGRYEEARELDEDTLErqrrvlglgeDHPHTLMTAGGLGADLRALGRFREALELDEETLERhrrvfgedHPR 518

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 168177007  68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Cdd:NF040586 519 TLRAANNLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARDLRELGRYAEALDLLEEALE 590
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 11-132 1.78e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.68  E-value: 1.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  11 YYKQGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------LDPRSAEAW 72
Cdd:NF040586 402 LYLRGDYESARDLAERALErwrerlgpDDRQTLRLRFHLANALRSLGRYEEARELDEDTLErqrrvlglgeDHPHTLMTA 481

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  73 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:NF040586 482 GGLGADLRALGRFREALELDEETLERhrrvfgedHPRTLRAANNLAVSLRLLGDYREALELDREVLRR 549
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 3-132 8.68e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.75  E-value: 8.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   3 AWYNLGNAYYKQGDYDEAIEYYQKALE------LDPRSAE----AWyNLGNAYYKQGDYDEAIEYYQKALEL-------- 64
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALEryrevlGGPDHPDtlraAK-SLAVALRRAGRLEEALELAEDTYERyrrrfgpd 642

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  65 --DPRSAEAwyNLGNAYYKQGDYDEAIEY-------YQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:NF040586 643 hpDTLAAAL--SLANDLRALGDADEARELarevldrYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAALEG 718
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 6-124 1.85e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 39.90  E-value: 1.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALEL----------DPRSAEAwyNLGNAYYKQGDYDEAIEY-------YQKALELD-PR 67
Cdd:NF040586 610 SLAVALRRAGRLEEALELAEDTYERyrrrfgpdhpDTLAAAL--SLANDLRALGDADEARELarevldrYRRVLGEDhPF 687

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-------PRSAEAWYNLGNAYYKQGDYDEAIE 124
Cdd:NF040586 688 TLACRNNLAVLLRALGDPEEARELAEAALEgLRerlgpdhPYTLAAAVNLANDLAALGDLDAALG 752
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-134 7.67e-51

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 170.56  E-value: 7.67e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG3914  158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-132 6.20e-44

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 152.07  E-value: 6.20e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG3914  112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:COG3914  192 DLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-136 3.07e-37

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 127.54  E-value: 3.07e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG2956   42 VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE 121

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG2956  122 QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-134 4.57e-37

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 126.66  E-value: 4.57e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG0457   88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-136 1.49e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 126.00  E-value: 1.49e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG2956   76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG2956  156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY 211
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-135 4.57e-36

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 130.11  E-value: 4.57e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG3914   44 ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL 123

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:COG3914  124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 19-134 5.18e-36

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 120.11  E-value: 5.18e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 168177007  99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 4-136 1.39e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 123.30  E-value: 1.39e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN 143
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-134 9.47e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 121.37  E-value: 9.47e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG2956  110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG2956  190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1-136 1.13e-33

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 114.52  E-value: 1.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-135 2.97e-33

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 116.64  E-value: 2.97e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG0457   42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:COG0457  122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1-105 5.08e-32

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 110.10  E-value: 5.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                         90       100
                 ....*....|....*....|....*
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEA 105
Cdd:COG4235   97 QQGDYAEAIAAWQKLLALLPADAPA 121
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 6-134 5.30e-31

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 109.78  E-value: 5.30e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85
Cdd:NF040959  42 NKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDY 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 168177007  86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:NF040959 122 EKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDP 170
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1-133 1.59e-29

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 105.92  E-value: 1.59e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:NF040959  71 VEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALD 150

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:NF040959 151 GLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-133 3.10e-28

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 104.43  E-value: 3.10e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG2956  144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  81 KQGDYDEAIEYYQKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:COG2956  224 KLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
28-135 2.67e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 2.67e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  28 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100
                 ....*....|....*....|....*...
gi 168177007 108 NLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPD 108
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1-131 6.70e-25

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 94.60  E-value: 6.70e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG4785   73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNL--------------------GNAYYKQGDYDEAIEYYQKALE 131
Cdd:COG4785  153 YLGRYELAIADLEKALELDPNDPERALWLylaerkldpekalallledwATAYLLQGDTEEARELFKLALA 223
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1-136 1.19e-24

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 93.94  E-value: 1.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR02521  31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007   81 KQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
5-134 4.53e-24

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 92.29  E-value: 4.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   5 YNLGNAYYKQGDYDEAIEYYQKALELdPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Cdd:COG4785   44 LALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 168177007  85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG4785  123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-136 3.50e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 87.94  E-value: 3.50e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100
                 ....*....|....*....|....
gi 168177007 113 YYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEH 105
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 53-135 1.68e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 85.83  E-value: 1.68e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                 ...
gi 168177007 133 DPR 135
Cdd:COG4235   81 DPD 83
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-135 1.81e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 91.59  E-value: 1.81e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG3914   10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:COG3914   90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-133 3.61e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.75  E-value: 3.61e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:COG0457  156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
44-135 2.11e-21

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 82.14  E-value: 2.11e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  44 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYyQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 168177007 124 EYYQKALELDPR 135
Cdd:COG3063   80 AYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
10-101 2.11e-21

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 82.14  E-value: 2.11e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEyYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 89
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 168177007  90 EYYQKALELDPR 101
Cdd:COG3063   80 AYLERALELDPS 91
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1-128 3.58e-21

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 85.08  E-value: 3.58e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNA 78
Cdd:TIGR02521  65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLC 144

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 168177007   79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Cdd:TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-134 2.87e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 82.44  E-value: 2.87e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 168177007   87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 11-134 3.16e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 82.44  E-value: 3.16e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 168177007   91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 8-134 7.13e-19

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 81.28  E-value: 7.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA--WYNL---------- 75
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESLlkvnrywlli 355

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   76 --GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:PRK11447  356 qqGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1-134 1.15e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 76.92  E-value: 1.15e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG5010   20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG5010  100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-136 1.21e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.51  E-value: 1.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007   81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 13-100 2.27e-18

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 77.98  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Cdd:NF033920 168 QTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAA 247


                 ....*...
gi 168177007  93 QKALELDP 100
Cdd:NF033920 248 ECALALAP 255
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 47-134 2.27e-18

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 77.98  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Cdd:NF033920 168 QTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAA 247


                 ....*...
gi 168177007 127 QKALELDP 134
Cdd:NF033920 248 ECALALAP 255
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 12-134 2.56e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 79.74  E-value: 2.56e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 168177007   92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 9-134 2.66e-18

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 78.80  E-value: 2.66e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   9 NAYYKQGDYDEAIEYYQKALELDPRSAeawynLGNAY--YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Cdd:COG3071  201 RALIALGDHDEAERLLREALKRQWDPR-----LVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWG 275

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 168177007  87 EAIEYYQKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG3071  276 KAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 2-134 8.02e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.20  E-value: 8.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLA 375

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 168177007   82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 10-105 1.26e-17

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 72.72  E-value: 1.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  10 AYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQG 83
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELG 81

                         90       100
                 ....*....|....*....|..
gi 168177007  84 DYDEAIEYYQKALELDPRSAEA 105
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAA 103
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 5-130 1.54e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.43  E-value: 1.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDyDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGE 852

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 168177007   85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-134 2.61e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 77.05  E-value: 2.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Cdd:TIGR02917 163 LGLAQLAlaENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 168177007   85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 3-136 3.56e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 76.66  E-value: 3.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82
Cdd:TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 168177007   83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 6-127 7.66e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 75.51  E-value: 7.66e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85
Cdd:TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 168177007   86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Cdd:TIGR02917 652 AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 44-136 7.95e-17

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 70.79  E-value: 7.95e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  44 AYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQG 117
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELG 81

                         90
                 ....*....|....*....
gi 168177007 118 DYDEAIEYYQKALELDPRS 136
Cdd:COG1729   82 DYDKARATLEELIKKYPDS 100
COG3899 COG3899
Predicted ATPase [General function prediction only];
1-132 9.44e-17

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 75.28  E-value: 9.44e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY------NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74
Cdd:COG3899   705 ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYrlalllELAEALYLAGRFEEAEALLERALAARALAALAALR 784

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007   75 LGN-----------AYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:COG3899   785 HGNppasarayanlGLLLLGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEA 859
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-136 1.58e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 74.73  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDF 272

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007   81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02917 273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS 328
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
4-131 2.22e-16

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 72.61  E-value: 2.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   4 WYNLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYY 80
Cdd:COG4700   92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfKSSDAHLLYARALE 171

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 168177007  81 KQGDYDEAIEYYQKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Cdd:COG4700  172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-136 3.61e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 73.58  E-value: 3.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAwyNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLAlaENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN 208

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 168177007   85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 1-116 6.33e-16

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 72.81  E-value: 6.33e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA--WYNL------------GNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:PRK11447  303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESLlkvnrywlliqqGDAALKANNLAQAERLYQQARQVDN 382

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 168177007   67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116
Cdd:PRK11447  383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 2-105 6.60e-16

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 68.46  E-value: 6.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNL 75
Cdd:TIGR02795   1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSpkaPDALLKL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 168177007   76 GNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Cdd:TIGR02795  81 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 17-134 8.45e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 72.71  E-value: 8.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   17 YDEAIEYYQKAL---ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Cdd:TIGR00990 310 YEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 168177007   94 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
62-136 9.35e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.81  E-value: 9.35e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD 75
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 33-131 1.43e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 70.06  E-value: 1.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Cdd:TIGR02521  29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108

                          90
                  ....*....|....*....
gi 168177007  113 YYKQGDYDEAIEYYQKALE 131
Cdd:TIGR02521 109 LCQQGKYEQAMQQFEQAIE 127
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 15-133 1.85e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.55  E-value: 1.85e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 168177007   95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:TIGR00990 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 26-134 2.08e-15

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 68.55  E-value: 2.08e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  26 KALELDPRSAEA--WYNLGNAYYKQGDYDEAIEYYQKALEL--DP--RSaEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Cdd:PRK02603  24 KILPINKKAKEAfvYYRDGMSAQADGEYAEALENYEEALKLeeDPndRS-YILYNMGIIYASNGEHDKALEYYHQALELN 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 168177007 100 PRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDP 134
Cdd:PRK02603 103 PKQPSALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAP 151
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-136 2.97e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 70.88  E-value: 2.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAwyNLGNAYYK--QG 83
Cdd:TIGR02917  96 LARAYLLQGKFQQVLDELPGKTLLDdEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLAlaEN 173

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 168177007   84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 14-136 3.24e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.78  E-value: 3.24e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Cdd:TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 168177007   94 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 10-134 3.79e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 70.88  E-value: 3.79e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 89
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 168177007   90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-134 6.97e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 70.11  E-value: 6.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELDPRS----------------------AEAW-----------YNLGNAYYKQGDYDE 53
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSqnaiklhrallasgntaeavktLEAWlkthpndavlrTALAELYLAQKDYDK 788

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDyDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:TIGR02917 789 AIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867


                  .
gi 168177007  134 P 134
Cdd:TIGR02917 868 P 868
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 3-66 7.05e-15

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 68.73  E-value: 7.05e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007   3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:NF033920 192 AYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
6-136 7.25e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 7.25e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELdPRSAEAWYNLGNAYYKQGDY 85
Cdd:COG4785   11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDY 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 168177007  86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG4785   90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 6-105 3.82e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 66.21  E-value: 3.82e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    6 NLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83
Cdd:TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183

                          90       100
                  ....*....|....*....|..
gi 168177007   84 DYDEAIEYYQKALELDPRSAEA 105
Cdd:TIGR02521 184 QYKDARAYLERYQQTYNQTAES 205
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-136 4.10e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 67.80  E-value: 4.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR02917  22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007   81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDdEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS 158
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
25-131 2.35e-13

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 64.52  E-value: 2.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  25 QKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--R 101
Cdd:COG4700   80 EKALEFAD-TVQNRVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfK 158

                         90       100       110
                 ....*....|....*....|....*....|
gi 168177007 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Cdd:COG4700  159 SSDAHLLYARALEALGDLEAAEAELEALAR 188
TPR_12 pfam13424
Tetratricopeptide repeat;
69-135 4.98e-13

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 60.09  E-value: 4.98e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
35-101 4.98e-13

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 60.09  E-value: 4.98e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007   35 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
1-67 4.98e-13

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 60.09  E-value: 4.98e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
15-135 5.14e-13

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 64.88  E-value: 5.14e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   15 GDYDEAIEYYQKAleldprsaeawynlGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY------NLGNAYYKQGDYDEA 88
Cdd:COG3899   699 GERDRAARLLLRA--------------ARRALARGAYAEALRYLERALELLPPDPEEEYrlalllELAEALYLAGRFEEA 764

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007   89 IEYYQKALELDPRSAEAWYNLGN-----------AYYKQGDYDEAIEYYQKALELDPR 135
Cdd:COG3899   765 EALLERALAARALAALAALRHGNppasarayanlGLLLLGDYEEAYEFGELALALAER 822
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1-136 7.07e-13

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 63.36  E-value: 7.07e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYN 74
Cdd:COG4105   32 AEELYEEAKEALEKGDYEKAIKLFEELEPRYPGSpyaEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSpnaDYAYYL 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  75 LGNAYYK--------QGDYDEAIEYYQKALELDPRS-----------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Cdd:COG4105  112 RGLSYYEqspdsdrdQTSTRKAIEAFQELINRYPDSeyaedakkridelrdklARKELEVARYYLKRGAYVAAINRFQNV 191


                 ....*..
gi 168177007 130 LELDPRS 136
Cdd:COG4105  192 LEDYPDT 198
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-134 1.37e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.18  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   81 KQGDYDEAIEYYQKALELDPRS----------------------AEAW-----------YNLGNAYYKQGDYDEAIEYYQ 127
Cdd:TIGR02917 715 RQKDYPAAIQAYRKALKRAPSSqnaiklhrallasgntaeavktLEAWlkthpndavlrTALAELYLAQKDYDKAIKHYQ 794


                  ....*..
gi 168177007  128 KALELDP 134
Cdd:TIGR02917 795 TVVKKAP 801
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 14-131 1.58e-12

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 62.90  E-value: 1.58e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYY 92
Cdd:PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALGDEAEGLEFL 272

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 168177007  93 QKALELDPRSA--EAWYNLGNayyKQGDYDEAIEYYQKALE 131
Cdd:PRK11788 273 RRALEEYPGADllLALAQLLE---EQEGPEAAQALLREQLR 310
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1-67 3.87e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.26  E-value: 3.87e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEyYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Cdd:COG3063   26 ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-133 4.41e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.18  E-value: 4.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:COG0457  110 AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:COG0457  190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 39-132 5.01e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 61.11  E-value: 5.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQg 117
Cdd:cd24142    4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSGGE- 82

                         90
                 ....*....|....*
gi 168177007 118 dydEAIEYYQKALEL 132
Cdd:cd24142   83 ---EALQYYEKGIEI 94
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 5-136 8.56e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 60.72  E-value: 8.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQg 83
Cdd:cd24142    4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSGGE- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  84 dydEAIEYYQKALE-----LDPRSAEAWYNLGNAYYKQGDYDEAI----------------------EYYQKALELDPRS 136
Cdd:cd24142   83 ---EALQYYEKGIEileeeLQALQAASAEAEEEAEELKRKLSSALcalaeiymtdlcdepdaeqrceELITKALELDPTN 159
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1-127 1.09e-11

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 59.89  E-value: 1.09e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYK--------QGDYDEAIEYYQKALELDPRS- 68
Cdd:COG4105   69 EQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSpnaDYAYYLRGLSYYEqspdsdrdQTSTRKAIEAFQELINRYPDSe 148

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  69 ----------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQ 127
Cdd:COG4105  149 yaedakkridelrdklARKELEVARYYLKRGAYVAAINRFQNVLEDYPDTpavEEALYLLVEAYYALGRYDEAQDAAA 226
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1-71 1.27e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 57.31  E-value: 1.27e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Cdd:COG1729   30 PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 4-136 1.74e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 1.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83
Cdd:TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKalalfqwKQDFIEAENLCEKALIIDPEC 541
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 3-134 1.79e-11

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 59.82  E-value: 1.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGN 77
Cdd:PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSlrveiAHFYCELAQ 188

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007  78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 33-136 2.26e-11

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 59.12  E-value: 2.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAW 106
Cdd:COG4105   30 WDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPGSpyaEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSpnaDYAY 109

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 168177007 107 YNLGNAYYK--------QGDYDEAIEYYQKALELDPRS 136
Cdd:COG4105  110 YLRGLSYYEqspdsdrdQTSTRKAIEAFQELINRYPDS 147
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 8-136 2.64e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 59.71  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDyDE 87
Cdd:PRK11447  358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP-EK 436

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007   88 AIEYYQ--------------KALELDPRSAEAwynlgNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:PRK11447  437 ALAFIAslsasqrrsiddieRSLQNDRLAQQA-----EALENQGKWAQAAELQRQRLALDPGS 494
TPR_11 pfam13414
TPR repeat;
8-49 2.70e-11

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 54.40  E-value: 2.70e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 168177007    8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 49
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
42-83 2.70e-11

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 54.40  E-value: 2.70e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 168177007   42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
76-117 2.70e-11

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 54.40  E-value: 2.70e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 168177007   76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 1-66 9.09e-11

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 58.00  E-value: 9.09e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:COG3071  258 PDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1-132 9.52e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 57.64  E-value: 9.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQgdydEAIEYYQKALE-----LDPRSAEAWYN 74
Cdd:cd24142   34 VEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSGGE----EALQYYEKGIEileeeLQALQAASAEA 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  75 LGNAYYKQGDYDEAI----------------------EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:cd24142  110 EEEAEELKRKLSSALcalaeiymtdlcdepdaeqrceELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-136 1.05e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.12  E-value: 1.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 168177007  96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
78-136 1.32e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.41  E-value: 1.32e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007  78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEyYQKALELDPRS 136
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNN 58
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 24-134 1.68e-10

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 54.99  E-value: 1.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   24 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103
Cdd:TIGR02552   6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85

                          90       100       110
                  ....*....|....*....|....*....|.
gi 168177007  104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02552  86 RPYFHAAECLLALGEPESALKALDLAIEICG 116
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 16-100 1.86e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.10  E-value: 1.86e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Cdd:PLN03088  17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96


                 ....*
gi 168177007  96 LELDP 100
Cdd:PLN03088  97 ASLAP 101
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 50-134 1.86e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.10  E-value: 1.86e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Cdd:PLN03088  17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96


                 ....*
gi 168177007 130 LELDP 134
Cdd:PLN03088  97 ASLAP 101
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-122 1.88e-10

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 55.40  E-value: 1.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKA--LELDP--RSAeAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Cdd:CHL00033  35 AFTYYRDGMSAQSEGEYAEALQNYYEAmrLEIDPydRSY-ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 168177007  77 NAYYKQGdyDEAIEyyqkalELDPRSAEAWYNLGNAYYKQ------GDYDEA 122
Cdd:CHL00033 114 VICHYRG--EQAIE------QGDSEIAEAWFDQAAEYWKQaialapGNYIEA 157
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 60-135 3.68e-10

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 54.68  E-value: 3.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  60 KALELDPRSAEA--WYNLGNAYYKQGDYDEAIEYYQKALEL--DP--RSaEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Cdd:PRK02603  24 KILPINKKAKEAfvYYRDGMSAQADGEYAEALENYEEALKLeeDPndRS-YILYNMGIIYASNGEHDKALEYYHQALELN 102


                 ..
gi 168177007 134 PR 135
Cdd:PRK02603 103 PK 104
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 1-71 3.70e-10

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 53.44  E-value: 3.70e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Cdd:TIGR02795  37 PNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSpkaPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 87-136 4.18e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.86  E-value: 4.18e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 168177007  87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN 50
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 14-124 4.93e-10

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 55.69  E-value: 4.93e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-WYNLGNAYYKQGDYDEAIEYY 92
Cdd:COG3071   29 EGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATL 108

                         90       100       110
                 ....*....|....*....|....*....|..
gi 168177007  93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Cdd:COG3071  109 EALRAGAPRHPQVLRLLLQAYRQLGDWEELLE 140
TPR COG0790
TPR repeat [General function prediction only];
1-132 5.31e-10

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 55.32  E-value: 5.31e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDprSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDprSAEAW 72
Cdd:COG0790   99 AEAQYNLGLMYEEglgvPQDYAKALEWYEKAAEQG--DADAQYNLGLLYLNgegvPKDPAKAAEWYRKAAEQG--DADAQ 174

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  73 YNLGNAYYK----QGDYDEAIEYYQKALELDprSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL 132
Cdd:COG0790  175 YNLGVLYENgrgvPKDPAKALEWYRKAAEQG--DADAQYNLGRLYLNgegvEKDLEKALRWLRKAAEQ 240
TPR_1 pfam00515
Tetratricopeptide repeat;
1-32 5.41e-10

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.88  E-value: 5.41e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 32
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
35-66 5.41e-10

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.88  E-value: 5.41e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007   35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
69-100 5.41e-10

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.88  E-value: 5.41e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
103-134 5.41e-10

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.88  E-value: 5.41e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007  103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
PRK10370 PRK10370
formate-dependent nitrite reductase complex subunit NrfG; Provisional
 25-135 5.68e-10

formate-dependent nitrite reductase complex subunit NrfG; Provisional


Pssm-ID: 182415 [Multi-domain]  Cd Length: 198  Bit Score: 54.52  E-value: 5.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  25 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA-YYKQGDY--DEAIEYYQKALELDPR 101
Cdd:PRK10370  63 QDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVlYYQAGQHmtPQTREMIDKALALDAN 142

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 168177007 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR 135
Cdd:PRK10370 143 EVTALMLLASDAFMQADYAQAIELWQKVLDLNsPR 177
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 1-131 6.09e-10

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 54.87  E-value: 6.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYN 74
Cdd:TIGR03302  33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSpyaEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHpdaDYAYYL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   75 LGNAYYKQ--------GDYDEAIEYYQKALELDPRS-----------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Cdd:TIGR03302 113 RGLSNYNQidrvdrdqTAAREAFEAFQELIRRYPNSeyapdakkrmdylrnrlAGKELYVARFYLKRGAYVAAINRFQTV 192


                  ..
gi 168177007  130 LE 131
Cdd:TIGR03302 193 VE 194
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1-32 8.90e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 50.52  E-value: 8.90e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 168177007     1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 32
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 35-66 8.90e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 50.52  E-value: 8.90e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 168177007    35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 69-100 8.90e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 50.52  E-value: 8.90e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 168177007    69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 103-134 8.90e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 50.52  E-value: 8.90e-10
                           10        20        30
                   ....*....|....*....|....*....|..
gi 168177007   103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 33-136 1.21e-09

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 54.10  E-value: 1.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAW 106
Cdd:TIGR03302  31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSpyaEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHpdaDYAY 110

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 168177007  107 YNLGNAYYKQ--------GDYDEAIEYYQKALELDPRS 136
Cdd:TIGR03302 111 YLRGLSNYNQidrvdrdqTAAREAFEAFQELIRRYPNS 148
TPR_19 pfam14559
Tetratricopeptide repeat;
14-72 1.56e-09

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 50.66  E-value: 1.56e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007   14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
TPR_19 pfam14559
Tetratricopeptide repeat;
48-106 1.56e-09

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 50.66  E-value: 1.56e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007   48 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 18-132 1.59e-09

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 54.17  E-value: 1.59e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELdprsaeaWYNLGNAYYKQGD------------- 84
Cdd:cd24142  143 QRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL-------WKDLKEEDEEEAEedeaeeedvpsye 215

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007  85 --------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD--EAIEYYQKALEL 132
Cdd:cd24142  216 frislakllielemYEEALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEKEqeEAAELLRDAREL 279
ycf3 CHL00033
photosystem I assembly protein Ycf3
 33-134 1.91e-09

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 52.70  E-value: 1.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKA--LELDP--RSAeAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108
Cdd:CHL00033  33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAmrLEIDPydRSY-ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 168177007 109 LGNAYYKQGD--------------YDEAIEYYQKALELDP 134
Cdd:CHL00033 112 MAVICHYRGEqaieqgdseiaeawFDQAAEYWKQAIALAP 151
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 35-123 2.69e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.83  E-value: 2.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAeAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205


                  ....*....
gi 168177007  115 KQGDYDEAI 123
Cdd:TIGR00990 206 GLGKYADAL 214
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1-89 2.69e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.83  E-value: 2.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAeAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205


                  ....*....
gi 168177007   81 KQGDYDEAI 89
Cdd:TIGR00990 206 GLGKYADAL 214
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 34-133 2.83e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.93  E-value: 2.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Cdd:TIGR02917  21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100

                          90       100
                  ....*....|....*....|
gi 168177007  114 YKQGDYDEAIEYYQKALELD 133
Cdd:TIGR02917 101 LLQGKFQQVLDELPGKTLLD 120
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 5-69 3.61e-09

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 49.64  E-value: 3.61e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007    5 YNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 69
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 39-103 3.61e-09

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 49.64  E-value: 3.61e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007   39 YNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 2-104 4.12e-09

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 51.14  E-value: 4.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81
Cdd:TIGR02552  18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97

                          90       100
                  ....*....|....*....|...
gi 168177007   82 QGDYDEAIEYYQKALELDPRSAE 104
Cdd:TIGR02552  98 LGEPESALKALDLAIEICGENPE 120
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1-71 4.44e-09

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 52.72  E-value: 4.44e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Cdd:TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
59-134 4.48e-09

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 52.58  E-value: 4.48e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007  59 QKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG4700   80 EKALEFAD-TVQNRVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNP 155
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 16-135 4.87e-09

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 52.99  E-value: 4.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAeawynLGNAY--YKQGDYDEAIEYYQ 93
Cdd:COG3071  174 DAEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPR-----LVRLYgrLQGGDPAKQLKRAE 248

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 168177007  94 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:COG3071  249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS 290
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 67-136 5.87e-09

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 52.34  E-value: 5.87e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02521  29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 47-129 6.01e-09

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 49.56  E-value: 6.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAlELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKA-KLNGSSLGCRYLFAQCLLKLKKYDEALDAL 79


                  ...
gi 168177007  127 QKA 129
Cdd:pfam12895  80 GKA 82
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 13-95 6.01e-09

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 49.56  E-value: 6.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAlELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKA-KLNGSSLGCRYLFAQCLLKLKKYDEALDAL 79


                  ...
gi 168177007   93 QKA 95
Cdd:pfam12895  80 GKA 82
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 73-136 6.02e-09

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 49.26  E-value: 6.02e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007   73 YNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 9-129 1.05e-08

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 51.91  E-value: 1.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    9 NAYYKQGDYDEAIEYYQKAL--ELDPRSAEAWYNLgnayyKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Cdd:TIGR00540 251 EALIQLGDHDEAEKLIEEALkkEWDPELLRLYGRL-----QPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLRQQLWG 325

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 168177007   87 EAIEYYQKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Cdd:TIGR00540 326 KAQSYLEASLSLAP-TEEAHLELAQLFEQLGDTEAAAQHYRKS 367
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 6-131 1.27e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.84  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPRSAE- 70
Cdd:NF040586 525 NLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARDLRELGRYAEALDLLEEALEryrevlGGPDHPDt 604

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007  71 ---AWyNLGNAYYKQGDYDEAIEYYQKALEL----------DPRSAEAwyNLGNAYYKQGDYDEAIEYYQKALE 131
Cdd:NF040586 605 lraAK-SLAVALRRAGRLEEALELAEDTYERyrrrfgpdhpDTLAAAL--SLANDLRALGDADEARELAREVLD 675
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 5-100 1.54e-08

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.44  E-value: 1.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAieyyqkalELDPRSAEAWynlgnayykqgd 84
Cdd:PRK02603  76 YNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEE--------AGDQDEAEAL------------ 135

                         90
                 ....*....|....*.
gi 168177007  85 YDEAIEYYQKALELDP 100
Cdd:PRK02603 136 FDKAAEYWKQAIRLAP 151
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 15-124 1.72e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.46  E-value: 1.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  15 GDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNA 78
Cdd:NF040586 492 GRFREALELDEETLERhrrvfgedHPRTLRAANNLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARD 571

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007  79 YYKQGDYDEAIEYYQKALE------LDPRSAE----AWyNLGNAYYKQGDYDEAIE 124
Cdd:NF040586 572 LRELGRYAEALDLLEEALEryrevlGGPDHPDtlraAK-SLAVALRRAGRLEEALE 626
TPR_19 pfam14559
Tetratricopeptide repeat;
82-136 1.94e-08

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 47.96  E-value: 1.94e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 168177007   82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDD 55
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 11-132 2.13e-08

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 51.16  E-value: 2.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   11 YYKQGDYDEAIEYYQKALELDP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAY 79
Cdd:pfam17874  11 AISKGDAERALELAEQALALLPeddllARGLATFVLGEAYLCLGDLDAALQAMREAEALarradsPHVTLWALLQQGEIL 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   80 YKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:pfam17874  91 RAQGRLHQALETYQQALQLardhglqhLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQL 151
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 6-131 2.32e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.07  E-value: 2.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALE----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPR 67
Cdd:NF040586 439 HLANALRSLGRYEEARELDEDTLErqrrvlglgeDHPHTLMTAGGLGADLRALGRFREALELDEETLERhrrvfgedHPR 518

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 168177007  68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Cdd:NF040586 519 TLRAANNLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARDLRELGRYAEALDLLEEALE 590
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 70-136 2.62e-08

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 48.82  E-value: 2.62e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02795   1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKS 70
PRK10370 PRK10370
formate-dependent nitrite reductase complex subunit NrfG; Provisional
 1-101 3.86e-08

formate-dependent nitrite reductase complex subunit NrfG; Provisional


Pssm-ID: 182415 [Multi-domain]  Cd Length: 198  Bit Score: 49.52  E-value: 3.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA-YYKQGDY--DEAIEYYQKALELDPRSAEAWYNLGN 77
Cdd:PRK10370  73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVlYYQAGQHmtPQTREMIDKALALDANEVTALMLLAS 152

                         90       100
                 ....*....|....*....|....*
gi 168177007  78 AYYKQGDYDEAIEYYQKALELD-PR 101
Cdd:PRK10370 153 DAFMQADYAQAIELWQKVLDLNsPR 177
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 16-101 7.56e-08

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 47.27  E-value: 7.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   16 DYDEAIEYYQKALELdPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAY--------YKQGDYD 86
Cdd:pfam20308   1 DYDAAVELLEALLAL-PEDARAQEQLALALARLpGDRDEALDVLEDLIERLGEDPETLGLLGRIYkrlwlesaEDREALD 79

                          90
                  ....*....|....*
gi 168177007   87 EAIEYYQKALELDPR 101
Cdd:pfam20308  80 QAIEAYRKAFELDPD 94
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 50-135 7.56e-08

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 47.27  E-value: 7.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   50 DYDEAIEYYQKALELdPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAY--------YKQGDYD 120
Cdd:pfam20308   1 DYDAAVELLEALLAL-PEDARAQEQLALALARLpGDRDEALDVLEDLIERLGEDPETLGLLGRIYkrlwlesaEDREALD 79

                          90
                  ....*....|....*
gi 168177007  121 EAIEYYQKALELDPR 135
Cdd:pfam20308  80 QAIEAYRKAFELDPD 94
TPR_9 pfam13371
Tetratricopeptide repeat;
41-105 1.17e-07

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 46.06  E-value: 1.17e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007   41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_9 pfam13371
Tetratricopeptide repeat;
7-71 1.17e-07

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 46.06  E-value: 1.17e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 6-127 1.66e-07

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 48.32  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    6 NLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPRS------ 68
Cdd:TIGR03302  75 DLAYAYYKSGDYAEAIAAADRFIRLHPNHpdaDYAYYLRGLSNYNQidrvdrdqTAAREAFEAFQELIRRYPNSeyapda 154

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007   69 -----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQ 127
Cdd:TIGR03302 155 kkrmdylrnrlAGKELYVARFYLKRGAYVAAINRFQTVVENYPDTpatEEALARLVEAYLKLGLTDLAQDAAA 227
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 63-132 1.71e-07

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 47.30  E-value: 1.71e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:smart01043  55 RLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 29-98 1.71e-07

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 47.30  E-value: 1.71e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Cdd:smart01043  55 RLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 5-132 2.38e-07

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 48.11  E-value: 2.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGdydEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Cdd:cd24145  151 EELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMNN---EAAELALHALRKPLSSTLIEASRLPQKSRDQL 227

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007  85 YDEAIEYYQKAL-------------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:cd24145  228 LEAALKWAQKALdvaksikpkdrdpECDQACALALYNLGVIAEMLGNLDEARKLYKEAISL 288
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 69-101 2.49e-07

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 44.05  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 35-67 2.49e-07

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 44.05  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007   35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 1-33 2.49e-07

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 44.05  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 33
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 103-135 2.49e-07

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 44.05  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007  103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 14-98 2.65e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.06  E-value: 2.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Cdd:TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKalalfqwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559

                          90
                  ....*....|..
gi 168177007   87 EAIEYYQKALEL 98
Cdd:TIGR00990 560 EALKLFERAAEL 571
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 3-104 2.68e-07

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 47.54  E-value: 2.68e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   3 AWYNLGNAYYKQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALElDPRSAEAWYNLGNAY 79
Cdd:COG2976   92 AALLLAKAAVDAGDLDKAAAQLQWVLDnakDPALKALARLRLARVLLAQKKYDEALATLDAVKP-EAFAALYAELRGDIL 170

                         90       100
                 ....*....|....*....|....*
gi 168177007  80 YKQGDYDEAIEYYQKALELDPRSAE 104
Cdd:COG2976  171 LAQGDKAEARAAYQKALAALPEDAP 195
TPR COG0790
TPR repeat [General function prediction only];
1-132 3.06e-07

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 47.62  E-value: 3.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDprSAEAWYNLG 76
Cdd:COG0790   29 AAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEgrgvPKDYEKALEWFEKAAEQG--DAEAQYNLG 106

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007  77 NAYYK----QGDYDEAIEYYQKALELDprSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL 132
Cdd:COG0790  107 LMYEEglgvPQDYAKALEWYEKAAEQG--DADAQYNLGLLYLNgegvPKDPAKAAEWYRKAAEQ 168
TPR_9 pfam13371
Tetratricopeptide repeat;
75-135 3.23e-07

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 44.90  E-value: 3.23e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPD 61
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 14-134 4.33e-07

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 46.77  E-value: 4.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  14 QGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDE 87
Cdd:COG2976   66 AGDAAAAAAAAEKLIDDYGGTayaALAALLLAKAAVDAGDLDKAAAQLQWVLDnakDPALKALARLRLARVLLAQKKYDE 145

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 168177007  88 AIEYYQKALElDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:COG2976  146 ALATLDAVKP-EAFAALYAELRGDILLAQGDKAEARAAYQKALAALP 191
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 1-64 4.43e-07

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 46.14  E-value: 4.43e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007     1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Cdd:smart01043  61 LEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 27-136 5.39e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 5.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Cdd:COG3914    2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81

                         90       100       110
                 ....*....|....*....|....*....|
gi 168177007 107 YNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALALNPDN 111
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 76-136 5.50e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 47.39  E-value: 5.50e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336
HemYx COG3898
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ...
 14-134 6.34e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];


Pssm-ID: 443105 [Multi-domain]  Cd Length: 468  Bit Score: 46.81  E-value: 6.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  14 QGDYDEAIEYYQKALElDPRSAEawynLG-----NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Cdd:COG3898  131 AGDREAARRAFEAMLE-DPETRF----LGlrglmVEALRRGDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGA 205

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 168177007  89 IEYYQKALE---LDPRSAE---AWYNLGNAYYK-QGDYDEAIEYYQKALELDP 134
Cdd:COG3898  206 LATLDAALKaglLDKDVARrrrAVLLTARARELeEGDPDEARELAIEALKLAP 258
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 1-132 8.28e-07

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 46.54  E-value: 8.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 66
Cdd:pfam17874  40 GLATFVLGEAYLCLGDLDAALQAMREAEALarradsPHVTLWALLQQGEILRAQGRLHQALETYQQALQLardhglqhLP 119

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:pfam17874 120 LHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPdAAVDAYVLLARIALAQGELEEALTLLRRAELL 190
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 69-134 8.47e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 46.90  E-value: 8.47e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAeAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDP 191
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 12-106 8.80e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.44  E-value: 8.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  12 YKQGDYDEAIEYYQKALELDPRSAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Cdd:COG3071   61 QALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLE 140

                         90
                 ....*....|....*....
gi 168177007  91 YY---QKALELDPRSAEAW 106
Cdd:COG3071  141 LLpalRKHKALSAEEAQAL 159
TPR_8 pfam13181
Tetratricopeptide repeat;
103-134 1.41e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 42.00  E-value: 1.41e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007  103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
TPR_8 pfam13181
Tetratricopeptide repeat;
69-100 1.41e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 42.00  E-value: 1.41e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
TPR_8 pfam13181
Tetratricopeptide repeat;
35-66 1.41e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 42.00  E-value: 1.41e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007   35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
TPR_8 pfam13181
Tetratricopeptide repeat;
1-32 1.41e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 42.00  E-value: 1.41e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 32
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 11-132 1.78e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.68  E-value: 1.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  11 YYKQGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------LDPRSAEAW 72
Cdd:NF040586 402 LYLRGDYESARDLAERALErwrerlgpDDRQTLRLRFHLANALRSLGRYEEARELDEDTLErqrrvlglgeDHPHTLMTA 481

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  73 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:NF040586 482 GGLGADLRALGRFREALELDEETLERhrrvfgedHPRTLRAANNLAVSLRLLGDYREALELDREVLRR 549
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 61-134 2.44e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 45.27  E-value: 2.44e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007  61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:PRK11189  90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 27-100 2.44e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 45.27  E-value: 2.44e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007  27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Cdd:PRK11189  90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 58-136 4.16e-06

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 43.05  E-value: 4.16e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007   58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:TIGR02552   6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84
HemYx COG3898
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ...
 13-122 4.22e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];


Pssm-ID: 443105 [Multi-domain]  Cd Length: 468  Bit Score: 44.50  E-value: 4.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPRSAE---AWYNLGNAYYK-QGDY 85
Cdd:COG3898  164 RRGDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKaglLDKDVARrrrAVLLTARARELeEGDP 243

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 168177007  86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Cdd:COG3898  244 DEARELAIEALKLAPDLVPAAVLAARLLIAQGKLRKA 280
TPR_17 pfam13431
Tetratricopeptide repeat;
23-56 7.32e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.22  E-value: 7.32e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 168177007   23 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 56
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_17 pfam13431
Tetratricopeptide repeat;
57-90 7.32e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.22  E-value: 7.32e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 168177007   57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_17 pfam13431
Tetratricopeptide repeat;
91-124 7.32e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 40.22  E-value: 7.32e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 168177007   91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 3-132 8.68e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.75  E-value: 8.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   3 AWYNLGNAYYKQGDYDEAIEYYQKALE------LDPRSAE----AWyNLGNAYYKQGDYDEAIEYYQKALEL-------- 64
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALEryrevlGGPDHPDtlraAK-SLAVALRRAGRLEEALELAEDTYERyrrrfgpd 642

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  65 --DPRSAEAwyNLGNAYYKQGDYDEAIEY-------YQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:NF040586 643 hpDTLAAAL--SLANDLRALGDADEARELarevldrYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAALEG 718
ycf3 CHL00033
photosystem I assembly protein Ycf3
 67-135 1.01e-05

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 42.69  E-value: 1.01e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007  67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKA--LELDP--RSAeAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:CHL00033  33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAmrLEIDPydRSY-ILYNIGLIHTSNGEHTKALEYYFQALERNPF 104
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 33-118 1.04e-05

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 43.01  E-value: 1.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKA---LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAW 106
Cdd:cd15830    1 MPAQELYEKAQTALQKGNYDGAIKYLEALdsrYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRHpniDYVY 80

                         90
                 ....*....|..
gi 168177007 107 YNLGNAYYKQGD 118
Cdd:cd15830   81 YMRGLSNYKLDR 92
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
13-123 1.66e-05

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 42.92  E-value: 1.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Cdd:PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395

                         90       100       110
                 ....*....|....*....|....*....|..
gi 168177007  93 QKALELDP-RSAEAWYNLGNAYYKQGdYDEAI 123
Cdd:PRK12370 396 NECLKLDPtRAAAGITKLWITYYHTG-IDDAI 426
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 1-84 1.93e-05

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 42.24  E-value: 1.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKA---LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYN 74
Cdd:cd15830    3 AQELYEKAQTALQKGNYDGAIKYLEALdsrYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRHpniDYVYYM 82

                         90
                 ....*....|
gi 168177007  75 LGNAYYKQGD 84
Cdd:cd15830   83 RGLSNYKLDR 92
TPR_7 pfam13176
Tetratricopeptide repeat;
105-135 2.11e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.06  E-value: 2.11e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 168177007  105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
TPR_7 pfam13176
Tetratricopeptide repeat;
71-101 2.11e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.06  E-value: 2.11e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 168177007   71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
TPR_7 pfam13176
Tetratricopeptide repeat;
37-67 2.11e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.06  E-value: 2.11e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 168177007   37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
TPR_7 pfam13176
Tetratricopeptide repeat;
3-33 2.11e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.06  E-value: 2.11e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 168177007    3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 33
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 5-129 2.74e-05

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 42.17  E-value: 2.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    5 YNLGNAYYKQGD-YDEAIEYYQKALELDpRSAEAWYNLGNAYyKQGDYDEAIEYYQKALELD------PRSAEAWYNLGN 77
Cdd:pfam14938  37 YKLAKNWEEAGEaFEKAAECQLKLGSKD-EAANAYVEAAKCY-KKVDPEEAVRALEKAIEIYtemgrfRRAAKHKKEIAE 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 168177007   78 AYYKQ-GDYDEAIEYYQKALEL---DPRSAEAwynlgNAYYKQ--------GDYDEAIEYYQKA 129
Cdd:pfam14938 115 LYEQElGDLEKAIEAYEQAADWyegEGASALA-----NKCYLKvadlsaelEDYPKAIEIYEKV 173
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 68-134 2.90e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 2.90e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007   68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:TIGR02917  21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY 87
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 45-136 3.08e-05

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.91  E-value: 3.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   45 YYKQGDYDEAIEYYQKALELDP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAY 113
Cdd:pfam17874  11 AISKGDAERALELAEQALALLPeddllARGLATFVLGEAYLCLGDLDAALQAMREAEALarradsPHVTLWALLQQGEIL 90

                          90       100
                  ....*....|....*....|...
gi 168177007  114 YKQGDYDEAIEYYQKALELDPRS 136
Cdd:pfam17874  91 RAQGRLHQALETYQQALQLARDH 113
StaR_like cd05804
StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member ...
 14-125 4.05e-05

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.


Pssm-ID: 100115 [Multi-domain]  Cd Length: 355  Bit Score: 41.50  E-value: 4.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYkQGDYDEAIEYYQKALEL-DPRSAEAWYNLGN---AYYKQGDYDEAI 89
Cdd:cd05804   56 AGDLPKALALLEQLLDDYPRDLLALKLHLGAFG-LGDFSGMRDHVARVLPLwAPENPDYWYLLGMlafGLEEAGQYDRAE 134

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 168177007  90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Cdd:cd05804  135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
 34-118 6.80e-05

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 40.77  E-value: 6.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWY 107
Cdd:pfam13525   3 PASELYEAGQTALQKGDYGDAIKKLEALDNRypfSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTHpniDYVYY 82

                          90
                  ....*....|.
gi 168177007  108 NLGNAYYKQGD 118
Cdd:pfam13525  83 MRGLSNFAQDR 93
SPO22 pfam08631
Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in ...
 81-132 6.97e-05

Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation.


Pssm-ID: 462542  Cd Length: 273  Bit Score: 40.74  E-value: 6.97e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   81 KQGDYDEAIEYYQKALE-----LDPRSAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:pfam08631   4 KQGDLDLAEHMLSKACEdnllrLDPETAEelarLLYNIGKSLLSKRKYEEAIKWLQRAYDI 64
SPO22 pfam08631
Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in ...
 47-98 6.97e-05

Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation.


Pssm-ID: 462542  Cd Length: 273  Bit Score: 40.74  E-value: 6.97e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   47 KQGDYDEAIEYYQKALE-----LDPRSAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Cdd:pfam08631   4 KQGDLDLAEHMLSKACEdnllrLDPETAEelarLLYNIGKSLLSKRKYEEAIKWLQRAYDI 64
SPO22 pfam08631
Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in ...
 13-64 6.97e-05

Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation.


Pssm-ID: 462542  Cd Length: 273  Bit Score: 40.74  E-value: 6.97e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007   13 KQGDYDEAIEYYQKALE-----LDPRSAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Cdd:pfam08631   4 KQGDLDLAEHMLSKACEdnllrLDPETAEelarLLYNIGKSLLSKRKYEEAIKWLQRAYDI 64
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
 12-84 7.29e-05

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 40.39  E-value: 7.29e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007   12 YKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGD 84
Cdd:pfam13525  15 LQKGDYGDAIKKLEALDNRypfSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTHpniDYVYYMRGLSNFAQDR 93
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 13-132 9.20e-05

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 40.64  E-value: 9.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  13 KQGDYDEAIEYYQKAleldprsaeawynlGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY---NLGNAY--YKQGDYDE 87
Cdd:cd15832   24 GGSKYEEAAELYEKA--------------ANAFKLAKNWEEAGDAFLKAAECQLKLDSKHDaanAYVEAAkcYKKVDPQE 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 168177007  88 AIEYYQKALEL------DPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL 132
Cdd:cd15832   90 AVNCLEKAIEIytemgrFRQAAKHLKEIAELYENElGDLDKAIEAYEQAADY 141
TPR_14 pfam13428
Tetratricopeptide repeat;
69-112 1.03e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 37.40  E-value: 1.03e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 168177007   69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR_14 pfam13428
Tetratricopeptide repeat;
35-78 1.03e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 37.40  E-value: 1.03e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 168177007   35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR_14 pfam13428
Tetratricopeptide repeat;
1-44 1.03e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 37.40  E-value: 1.03e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 44
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 14-130 1.26e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Cdd:PRK11447  616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 168177007   94 K---ALELDPRSAEAWYNLGNA---YYKQGDYDEAIEYYQKAL 130
Cdd:PRK11447  696 RlipQAKSQPPSMESALVLRDAarfEAQTGQPQQALETYKDAM 738
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 1-130 1.50e-04

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 39.87  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------------- 67
Cdd:PRK11189  98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNdpyralwlylaes 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  68 ---SAEAWYNLGNAYYKQGDYDEA---IEYY-----QKAL------------ELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Cdd:PRK11189 178 kldPKQAKENLKQRYEKLDKEQWGwniVEFYlgkisEETLmerlkagatdntELAERLCETYFYLAKYYLSLGDLDEAAA 257


                 ....*.
gi 168177007 125 YYQKAL 130
Cdd:PRK11189 258 LFKLAL 263
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 6-124 1.85e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 39.90  E-value: 1.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   6 NLGNAYYKQGDYDEAIEYYQKALEL----------DPRSAEAwyNLGNAYYKQGDYDEAIEY-------YQKALELD-PR 67
Cdd:NF040586 610 SLAVALRRAGRLEEALELAEDTYERyrrrfgpdhpDTLAAAL--SLANDLRALGDADEARELarevldrYRRVLGEDhPF 687

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-------PRSAEAWYNLGNAYYKQGDYDEAIE 124
Cdd:NF040586 688 TLACRNNLAVLLRALGDPEEARELAEAALEgLRerlgpdhPYTLAAAVNLANDLAALGDLDAALG 752
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 17-105 1.88e-04

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 39.78  E-value: 1.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  17 YDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQGDYDEAIEYYQ---KALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Cdd:PRK10803 159 QDDAIVAFQNFVKKYPDSTyqpNANYWLGQLNYNKGKKDDAAYYFAsvvKNYPKSPKAADAMFKVGVIMQDKGDTAKAKA 238

                         90
                 ....*....|....*
gi 168177007  91 YYQKALELDPRSAEA 105
Cdd:PRK10803 239 VYQQVIKKYPGTDGA 253
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 1-97 2.20e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 39.41  E-value: 2.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGN 77
Cdd:PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADllLALAQLLE 293

                         90       100
                 ....*....|....*....|
gi 168177007  78 ayyKQGDYDEAIEYYQKALE 97
Cdd:PRK11788 294 ---EQEGPEAAQALLREQLR 310
TPR_10 pfam13374
Tetratricopeptide repeat;
6-30 2.44e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 2.44e-04
                          10        20
                  ....*....|....*....|....*
gi 168177007    6 NLGNAYYKQGDYDEAIEYYQKALEL 30
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAI 31
TPR_10 pfam13374
Tetratricopeptide repeat;
108-132 2.44e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 2.44e-04
                          10        20
                  ....*....|....*....|....*
gi 168177007  108 NLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAI 31
TPR_10 pfam13374
Tetratricopeptide repeat;
74-98 2.44e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 2.44e-04
                          10        20
                  ....*....|....*....|....*
gi 168177007   74 NLGNAYYKQGDYDEAIEYYQKALEL 98
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAI 31
TPR_10 pfam13374
Tetratricopeptide repeat;
40-64 2.44e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 2.44e-04
                          10        20
                  ....*....|....*....|....*
gi 168177007   40 NLGNAYYKQGDYDEAIEYYQKALEL 64
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAI 31
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
47-134 2.53e-04

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 39.45  E-value: 2.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Cdd:PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395


                 ....*...
gi 168177007 127 QKALELDP 134
Cdd:PRK12370 396 NECLKLDP 403
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 29-96 2.65e-04

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 39.49  E-value: 2.65e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007  29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKAL 96
Cdd:PLN03098  69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEaqaAYYNKACCHAYREEGKKAADCLRTAL 139
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 63-130 2.65e-04

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 39.49  E-value: 2.65e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007  63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKAL 130
Cdd:PLN03098  69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEaqaAYYNKACCHAYREEGKKAADCLRTAL 139
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 17-132 3.09e-04

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 39.09  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   17 YDEAIEYYQKALELdprsaeawYNLGNAYYKQGD-YDEAIEYYQKALELDpRSAEAWYNLGNAYyKQGDYDEAIEYYQKA 95
Cdd:pfam14938  23 YEEAADLYIQAANA--------YKLAKNWEEAGEaFEKAAECQLKLGSKD-EAANAYVEAAKCY-KKVDPEEAVRALEKA 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 168177007   96 LELD------PRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL 132
Cdd:pfam14938  93 IEIYtemgrfRRAAKHKKEIAELYEQElGDLEKAIEAYEQAADW 136
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 67-136 3.32e-04

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 38.77  E-value: 3.32e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007  67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKA---LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:cd15830    1 MPAQELYEKAQTALQKGNYDGAIKYLEALdsrYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRH 73
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 51-136 3.90e-04

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 38.62  E-value: 3.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  51 YDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQGDYDEAIEYYQ---KALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Cdd:PRK10803 159 QDDAIVAFQNFVKKYPDSTyqpNANYWLGQLNYNKGKKDDAAYYFAsvvKNYPKSPKAADAMFKVGVIMQDKGDTAKAKA 238

                         90
                 ....*....|..
gi 168177007 125 YYQKALELDPRS 136
Cdd:PRK10803 239 VYQQVIKKYPGT 250
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 13-132 4.23e-04

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 38.06  E-value: 4.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  13 KQGDYDEAIEyyqKALELDPrsaEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Cdd:PRK15359   8 KNKIPEDILK---QLLSVDP---ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFY 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 168177007  93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:PRK15359  82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121
COG3899 COG3899
Predicted ATPase [General function prediction only];
1-71 4.97e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 38.69  E-value: 4.97e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 168177007    1 AEAWYNLGNAYykQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Cdd:COG3899   792 ARAYANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
DnrI COG3629
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ...
 63-134 5.21e-04

DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];


Pssm-ID: 442847 [Multi-domain]  Cd Length: 244  Bit Score: 38.28  E-value: 5.21e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007  63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-------LELDP 134
Cdd:COG3629  151 RLEELRLAALEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLrrrladeLGVEP 229
DnrI COG3629
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ...
 29-100 5.21e-04

DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];


Pssm-ID: 442847 [Multi-domain]  Cd Length: 244  Bit Score: 38.28  E-value: 5.21e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 168177007  29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-------LELDP 100
Cdd:COG3629  151 RLEELRLAALEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLrrrladeLGVEP 229
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 1-70 5.47e-04

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.66  E-value: 5.47e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Cdd:TIGR02552  51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120
DnrI COG3629
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ...
 1-66 6.08e-04

DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];


Pssm-ID: 442847 [Multi-domain]  Cd Length: 244  Bit Score: 38.28  E-value: 6.08e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-------LELDP 66
Cdd:COG3629  157 LAALEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLrrrladeLGVEP 229
StaR_like cd05804
StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member ...
 14-92 6.65e-04

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.


Pssm-ID: 100115 [Multi-domain]  Cd Length: 355  Bit Score: 38.03  E-value: 6.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEA---WYNLGNAYYKQGDYDEAI 89
Cdd:cd05804  127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTwDCSSMLRghnWWHLALFYLERGDYEAAL 206


                 ...
gi 168177007  90 EYY 92
Cdd:cd05804  207 AIY 209
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 1-61 6.75e-04

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 38.04  E-value: 6.75e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPrSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Cdd:TIGR00540 308 ALLLLALGRLCLRQQLWGKAQSYLEASLSLAP-TEEAHLELAQLFEQLGDTEAAAQHYRKS 367
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-66 6.97e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 38.23  E-value: 6.97e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007   1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Cdd:PLN03088  36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 7-107 8.18e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 38.14  E-value: 8.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELD------------------PRSAEAWYN----------------LGNAYYKQ---- 48
Cdd:PRK11447  391 LGDVAMARKDYAAAERYYQQALRMDpgntnavrglanlyrqqsPEKALAFIAslsasqrrsiddiersLQNDRLAQqaea 470

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007   49 ----GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107
Cdd:PRK11447  471 lenqGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 1-61 8.51e-04

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 36.08  E-value: 8.51e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 168177007    1 AEAWYNLGNAYYKQGDYDEAIEYYQKAlELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Cdd:pfam12895  23 PEDAYLLAQCLFLNGQYKRAYELLRKA-KLNGSSLGCRYLFAQCLLKLKKYDEALDALGKA 82
TPR_11 pfam13414
TPR repeat;
110-134 9.89e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.75  E-value: 9.89e-04
                          10        20
                  ....*....|....*....|....*
gi 168177007  110 GNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDP 25
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 12-134 1.09e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 37.56  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  12 YKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL---DPRSAEA---WYNLGNA 78
Cdd:cd15832   82 YKKVDPQEAVNCLEKAIEIytemgrFRQAAKHLKEIAELYENElGDLDKAIEAYEQAADYyegEGANSLAnkcYLKVADL 161

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 168177007  79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-------DYDEAIEYYQKALELDP 134
Cdd:cd15832  162 AAQLEDYDKAIEIYEQVARSSLENNLLKYSAKDYFLKAGlchlaagDVVAAQRALEKYAELDP 224
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 1-67 1.13e-03

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 36.10  E-value: 1.13e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 168177007    1 AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAY--------YKQGDYDEAIEYYQKALELDPR 67
Cdd:pfam20308  19 ARAQEQLALALARLpGDRDEALDVLEDLIERLGEDPETLGLLGRIYkrlwlesaEDREALDQAIEAYRKAFELDPD 94
TPR COG0790
TPR repeat [General function prediction only];
16-129 1.21e-03

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 37.22  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEY 91
Cdd:COG0790   10 AAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEgrgvPKDYEKALEW 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 168177007  92 YQKALELDprSAEAWYNLGNAYYK----QGDYDEAIEYYQKA 129
Cdd:COG0790   90 FEKAAEQG--DAEAQYNLGLMYEEglgvPQDYAKALEWYEKA 129
TPR_15 pfam13429
Tetratricopeptide repeat;
33-128 1.33e-03

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 37.34  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Cdd:pfam13429 143 QSPAFWLARAEYYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAA 222

                          90
                  ....*....|....*.
gi 168177007  113 YYKQGDYDEAIEYYQK 128
Cdd:pfam13429 223 YLRLGRPRKALPYLRK 238
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 18-136 1.35e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 37.10  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE----AWYNLGNAYYKQGDYDEAIEYYQ 93
Cdd:PRK11788  52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREqrllALQELGQDYLKAGLLDRAEELFL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  94 KALELDPRSAEA-------------WYN--------------------------LGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:PRK11788 132 QLVDEGDFAEGAlqqlleiyqqekdWQKaidvaerleklggdslrveiahfyceLAQQALARGDLDAARALLKKALAADP 211


                 ..
gi 168177007 135 RS 136
Cdd:PRK11788 212 QC 213
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 15-132 1.45e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 37.33  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  15 GDYDEAIEYYQKALE------LDPRSAEawY-----NLGNAYYKQGDYDEAIE----YYQKALELDP------------- 66
Cdd:cd24145   22 PDPQKALKYYKEALEqadelgMDPFSDE--VtgiriKIAEMLEKLGMYKAAYEvlerLYLDCLRWTLkddeserghlikr 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  67 --RSAEAWYNLGNAYYkQGDYDEAIEYYQKALELDPRSAEAWYN----------LGNAYYKQGDYDEAIEYYQKALEL 132
Cdd:cd24145  100 dlRISIKLGELNKDSE-LGKWELRERLLKKAVEILLKLGELWMSpsevgafleeLATAYDLYGRFCLALPLYMQALSL 176
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 15-129 1.45e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 37.59  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  15 GDYDEAIEYYQKALEldpRSAEAW---YNLGNAYYKQGDYDEAIEYYQKALELDPRsAEAWYNLGNAYYKQGDYDEAIEY 91
Cdd:PRK09782 556 GNGAARDRWLQQAEQ---RGLGDNalyWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 168177007  92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Cdd:PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669
TPR_6 pfam13174
Tetratricopeptide repeat;
104-136 2.15e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 33.60  E-value: 2.15e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007  104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
TPR_6 pfam13174
Tetratricopeptide repeat;
70-102 2.15e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 33.60  E-value: 2.15e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007   70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
TPR_6 pfam13174
Tetratricopeptide repeat;
36-68 2.15e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 33.60  E-value: 2.15e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007   36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
TPR_6 pfam13174
Tetratricopeptide repeat;
2-34 2.15e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 33.60  E-value: 2.15e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 168177007    2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 34
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
 68-136 3.33e-03

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 35.77  E-value: 3.33e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 168177007   68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:pfam13525   3 PASELYEAGQTALQKGDYGDAIKKLEALDNRypfSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTH 74
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 82-136 3.91e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 36.04  E-value: 3.91e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 168177007  82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Cdd:COG3071   29 EGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEA 83
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 2-134 4.10e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 36.05  E-value: 4.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   2 EAWYNLGNAY--YKQGDYDEAIEYYQKaLELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEldpRSAEAW---YNLG 76
Cdd:PRK09782 508 DAWQHRAVAYqaYQVEDYATALAAWQK-ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNalyWWLH 583

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 168177007  77 NAYYKQGDYDEAIEYYQKALELDPRsAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Cdd:PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP 640
TPR_15 pfam13429
Tetratricopeptide repeat;
4-106 4.15e-03

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 35.80  E-value: 4.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83
Cdd:pfam13429 148 WLARAEYYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLG 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 168177007   84 DYDEAIEYYQK-----------------ALELDPRSAEAW 106
Cdd:pfam13429 228 RPRKALPYLRKqaasnrndplwllayadALEQAGRADAAW 267
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 12-95 5.89e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 35.66  E-value: 5.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007  12 YKQGDYDEAIEYYQKALELDPRsAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91
Cdd:PRK09782 587 YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665


                 ....
gi 168177007  92 YQKA 95
Cdd:PRK09782 666 LERA 669
TOM20_plant pfam06552
Plant specific mitochondrial import receptor subunit TOM20; This family consists of several ...
 19-117 5.98e-03

Plant specific mitochondrial import receptor subunit TOM20; This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.


Pssm-ID: 284068 [Multi-domain]  Cd Length: 187  Bit Score: 35.26  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQG----DYDEAIEYYQKALEldprsaeawynlgnaYYKQG-DYDEAIEYYQ 93
Cdd:pfam06552  53 DAISKLEEALTIDPKKHDALWCIGNAYTSHAfltpDPTEAKENFDKATQ---------------FFQQAvDEQPDNDLYR 117

                          90       100
                  ....*....|....*....|....
gi 168177007   94 KALELDPRSAEawynLGNAYYKQG 117
Cdd:pfam06552 118 KSLEMAAKAPE----LHTEFHKQG 137
RNPP_C pfam18768
RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor ...
 7-96 8.31e-03

RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor includes five TPR units of different lengths. This entry represents the TPR containing domain as a whole. This family is called RNPP after (Rapm NprR, PrgX, and PlcR).


Pssm-ID: 436723  Cd Length: 213  Bit Score: 34.81  E-value: 8.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007    7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYnLGNA 78
Cdd:pfam18768  85 LANLYAEEGKTNQSIQYYQQVITSSEANELDYdvlkikvmYNYSKLLYDKNDYDSSLEVINQGIASSIEKENMSL-LGQL 163

                          90       100
                  ....*....|....*....|....*.
gi 168177007   79 YYKQG--------DYDEAIEYYQKAL 96
Cdd:pfam18768 164 YYQRGeclekldgSEEEIAESYQRAL 189
RNPP_C pfam18768
RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor ...
 41-130 8.31e-03

RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor includes five TPR units of different lengths. This entry represents the TPR containing domain as a whole. This family is called RNPP after (Rapm NprR, PrgX, and PlcR).


Pssm-ID: 436723  Cd Length: 213  Bit Score: 34.81  E-value: 8.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYnLGNA 112
Cdd:pfam18768  85 LANLYAEEGKTNQSIQYYQQVITSSEANELDYdvlkikvmYNYSKLLYDKNDYDSSLEVINQGIASSIEKENMSL-LGQL 163

                          90       100
                  ....*....|....*....|....*.
gi 168177007  113 YYKQG--------DYDEAIEYYQKAL 130
Cdd:pfam18768 164 YYQRGeclekldgSEEEIAESYQRAL 189
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 2-98 9.03e-03

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 34.20  E-value: 9.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 168177007   2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81
Cdd:PRK15359  25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104

                         90
                 ....*....|....*..
gi 168177007  82 QGDYDEAIEYYQKALEL 98
Cdd:PRK15359 105 MGEPGLAREAFQTAIKM 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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