NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1678641913|ref|YP_009642742|]
View 

NADH dehydrogenase subunit 4 (plastid) [Medicago biflora]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11413988)

NADH dehydrogenase subunit 4 catalyzes the conversion from NAD(P)H and plastoquinone to NAD(P)(+) and plastoquinol

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ndhD CHL00011
NADH dehydrogenase subunit 4
2-498 0e+00

NADH dehydrogenase subunit 4


:

Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 974.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   2 TNYFPWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWRL 81
Cdd:CHL00011    1 MNYFPWLTIIVVLPIFAGSLIFFLPHRGNKVIRWYTLCICLLELLLTTYAFCYHFQLDDPLIQLKEDYKWINFFDFHWRL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  82 GIDGLSIGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKR 161
Cdd:CHL00011   81 GIDGLSIGPILLTGFITTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 162 LYSATKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGE 241
Cdd:CHL00011  161 LYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQSYPVALEILFYIGFLIAYAVKLPIIPLHTWLPDTHGE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 242 AHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGI 321
Cdd:CHL00011  241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 322 GSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIV 401
Cdd:CHL00011  321 GSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIV 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 402 FFGIITSQKYLFMMKILITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNAYFFDSGPRELFISISILIPVIGIGIYPD 481
Cdd:CHL00011  401 FFGIITSQKYLLMPKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICILLPVIGIGIYPD 480
                         490
                  ....*....|....*..
gi 1678641913 482 FIFSFSVDKVEAILANF 498
Cdd:CHL00011  481 FVLSLSVDKVEAILSNY 497
 
Name Accession Description Interval E-value
ndhD CHL00011
NADH dehydrogenase subunit 4
2-498 0e+00

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 974.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   2 TNYFPWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWRL 81
Cdd:CHL00011    1 MNYFPWLTIIVVLPIFAGSLIFFLPHRGNKVIRWYTLCICLLELLLTTYAFCYHFQLDDPLIQLKEDYKWINFFDFHWRL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  82 GIDGLSIGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKR 161
Cdd:CHL00011   81 GIDGLSIGPILLTGFITTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 162 LYSATKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGE 241
Cdd:CHL00011  161 LYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQSYPVALEILFYIGFLIAYAVKLPIIPLHTWLPDTHGE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 242 AHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGI 321
Cdd:CHL00011  241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 322 GSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIV 401
Cdd:CHL00011  321 GSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIV 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 402 FFGIITSQKYLFMMKILITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNAYFFDSGPRELFISISILIPVIGIGIYPD 481
Cdd:CHL00011  401 FFGIITSQKYLLMPKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICILLPVIGIGIYPD 480
                         490
                  ....*....|....*..
gi 1678641913 482 FIFSFSVDKVEAILANF 498
Cdd:CHL00011  481 FVLSLSVDKVEAILSNY 497
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
5-498 1.10e-168

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 484.97  E-value: 1.10e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   5 FPWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFcYHFQLDDPLIQLTENYKWINFFDFYWRLGID 84
Cdd:COG1008     3 MPLLSLLILLPLLGALLLLLLPRRNARLARWVALAVSLLTLLLSLYLL-AGFDPGTGGFQFVESYPWIPSLGISYHLGVD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  85 GLSIGPILLTGFITTLATLAAQPVTREYQ-LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLY 163
Cdd:COG1008    82 GISLPLVLLTALLTPLAILASWNEIKKRPkLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGGERRIY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 164 SATKFILYTAGGSVFLLMGILGIGLYgSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAH 243
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFL-AGALTFDIAELAAAPLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 244 YSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGS 323
Cdd:COG1008   241 TAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 324 ISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFF 403
Cdd:COG1008   321 LNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLL 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 404 GIITSQkylfmmkILITFVTAIGMILTPIYLLSILRQMFYGYkfFNTPNAYFFDSGPRELFISISILIPVIGIGIYPDFI 483
Cdd:COG1008   401 GAFQVN-------PWLAILAALGLILTAAYLLWMYQRVFFGP--LKEELAELPDLNPRELAVLAPLAALILLLGLYPQPL 471
                         490
                  ....*....|....*
gi 1678641913 484 FSFSVDKVEAILANF 498
Cdd:COG1008   472 LDLIEPSVEALLARV 486
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
8-498 9.87e-140

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 410.87  E-value: 9.87e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFcYHFQLDDPLIQLTENYKWINFFDFYWRLGIDGLS 87
Cdd:TIGR01972   1 LSLLIFLPLIGALLILLLPSNKDGKARWIALVVALATLLLSLLLL-FQFDPTGSGFQFTEDIPWIPALGISYHLGVDGIS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  88 IGPILLTGFITTLATLAAQPVTREYQ-LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSAT 166
Cdd:TIGR01972  80 LLLVLLTALLTLLAILASWESIQKRVkEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAM 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 167 KFILYTAGGSVFLLMGIlgIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYST 246
Cdd:TIGR01972 160 KFFLYTLAGSLLMLLAI--LGLYFLGGGTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 247 CMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISD 326
Cdd:TIGR01972 238 SVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNE 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 327 TGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIi 406
Cdd:TIGR01972 318 LGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGS- 396
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 407 tsqkylFMMKILITFVTAIGMILTPIYLLSILRQMFYGyKFFNTPNAYFFDSGPRELFISISILIPVIGIGIYPDFIFSF 486
Cdd:TIGR01972 397 ------FKVNPVVAFLAALGIVLAAAYMLTLYKRVFFG-ELSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDL 469
                         490
                  ....*....|..
gi 1678641913 487 SVDKVEAILANF 498
Cdd:TIGR01972 470 TEPSVNNLLSQV 481
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
132-420 3.21e-44

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 157.48  E-value: 3.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 132 SRDILLFFIMWELELIPVYLLLAMWGGKKRLYSAT-KFILYTAGGSVFLLMGILGIGLYGSnepTLNFETLTNQSYPVAL 210
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGmKYFLLTLLGSSILLFGISLMYNYTG---TLSFDELSKALTGGLN 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 211 EI---LLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRInMELFSHAHSIFCPWLMILGSI 287
Cdd:pfam00361  78 SSgllLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRR-SLLYLPSSPFIQQILLILAII 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 288 QIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAG-TSYDRLRLLYLDEMG 366
Cdd:pfam00361 157 SMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGsVIYRRVHTRNIRDYG 236
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1678641913 367 GMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILIT 420
Cdd:pfam00361 237 GLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
 
Name Accession Description Interval E-value
ndhD CHL00011
NADH dehydrogenase subunit 4
2-498 0e+00

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 974.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   2 TNYFPWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWRL 81
Cdd:CHL00011    1 MNYFPWLTIIVVLPIFAGSLIFFLPHRGNKVIRWYTLCICLLELLLTTYAFCYHFQLDDPLIQLKEDYKWINFFDFHWRL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  82 GIDGLSIGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKR 161
Cdd:CHL00011   81 GIDGLSIGPILLTGFITTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 162 LYSATKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGE 241
Cdd:CHL00011  161 LYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQSYPVALEILFYIGFLIAYAVKLPIIPLHTWLPDTHGE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 242 AHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGI 321
Cdd:CHL00011  241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 322 GSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIV 401
Cdd:CHL00011  321 GSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIV 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 402 FFGIITSQKYLFMMKILITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNAYFFDSGPRELFISISILIPVIGIGIYPD 481
Cdd:CHL00011  401 FFGIITSQKYLLMPKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICILLPVIGIGIYPD 480
                         490
                  ....*....|....*..
gi 1678641913 482 FIFSFSVDKVEAILANF 498
Cdd:CHL00011  481 FVLSLSVDKVEAILSNY 497
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
1-480 0e+00

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 587.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   1 MTNYFPWLTIVVVFPIAAGSLIFLFPHRGN-KVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYW 79
Cdd:PRK02546    2 NLANFPWLTTIILFPIVAALLIPFIPDKGDgKTVRWYALIVGLIDFLITVYAFYTGYDFSNPGLQLVESYSWLPQLGLTW 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  80 RLGIDGLSIGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGK 159
Cdd:PRK02546   82 SVGADGLSMPLILLTGFITTLAVLAAWPVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGK 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 160 KRLYSATKFILYTAGGSVFLLMGILGIGLYGSNePTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTH 239
Cdd:PRK02546  162 KRQYAATKFILYTAGSSLFILLAALAMAFYGDT-PTFDMTALAAKDFGLGFQLLCYAGLLIAYGVKLPIVPLHTWLPDAH 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 240 GEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIL 319
Cdd:PRK02546  241 GEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 320 GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAEL 399
Cdd:PRK02546  321 GIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAEL 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 400 IVFFGIITSQKYLFMMKILITFVTAIGMILTPIYLLSILRQMFYGYKFFN-TPNAYFFDSGPRELFISISILIPVIGIGI 478
Cdd:PRK02546  401 MVFVGFATSDAYTLPFRVVVVFLAAVGVILTPIYLLSMLREIFFGPENKElVSHEKLVDAEPREVFIIACLLVPIIGIGL 480

                  ..
gi 1678641913 479 YP 480
Cdd:PRK02546  481 YP 482
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
30-480 0e+00

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 580.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  30 NKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAQPVT 109
Cdd:PRK12561    4 GKTVRWYALGVGLADFALMCYVFWQHYDPSSSSLQLVERYAWLPQIGLEWSLGVDGLSMPLVLLSGLITTLSIFASWKVT 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 110 REYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGIGLY 189
Cdd:PRK12561   84 RKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALS 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 190 GSNePTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMEL 269
Cdd:PRK12561  164 GDT-FTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQM 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 270 FSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFL 349
Cdd:PRK12561  243 LPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFL 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 350 AGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTAIGMIL 429
Cdd:PRK12561  323 TGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGITSSDVYSSTFRTITILLAAVGLIL 402
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1678641913 430 TPIYLLSILRQMFYGYKFFNTP-NAYFFDSGPRELFISISILIPVIGIGIYP 480
Cdd:PRK12561  403 TPIYLLSMLRRVFYGPRSELLPaLAVVEDAKPRELFIALSLLVPIIGIGFYP 454
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
5-498 1.10e-168

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 484.97  E-value: 1.10e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   5 FPWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFcYHFQLDDPLIQLTENYKWINFFDFYWRLGID 84
Cdd:COG1008     3 MPLLSLLILLPLLGALLLLLLPRRNARLARWVALAVSLLTLLLSLYLL-AGFDPGTGGFQFVESYPWIPSLGISYHLGVD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  85 GLSIGPILLTGFITTLATLAAQPVTREYQ-LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLY 163
Cdd:COG1008    82 GISLPLVLLTALLTPLAILASWNEIKKRPkLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGGERRIY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 164 SATKFILYTAGGSVFLLMGILGIGLYgSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAH 243
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFL-AGALTFDIAELAAAPLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 244 YSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGS 323
Cdd:COG1008   241 TAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 324 ISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFF 403
Cdd:COG1008   321 LNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLL 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 404 GIITSQkylfmmkILITFVTAIGMILTPIYLLSILRQMFYGYkfFNTPNAYFFDSGPRELFISISILIPVIGIGIYPDFI 483
Cdd:COG1008   401 GAFQVN-------PWLAILAALGLILTAAYLLWMYQRVFFGP--LKEELAELPDLNPRELAVLAPLAALILLLGLYPQPL 471
                         490
                  ....*....|....*
gi 1678641913 484 FSFSVDKVEAILANF 498
Cdd:COG1008   472 LDLIEPSVEALLARV 486
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
8-498 9.87e-140

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 410.87  E-value: 9.87e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFcYHFQLDDPLIQLTENYKWINFFDFYWRLGIDGLS 87
Cdd:TIGR01972   1 LSLLIFLPLIGALLILLLPSNKDGKARWIALVVALATLLLSLLLL-FQFDPTGSGFQFTEDIPWIPALGISYHLGVDGIS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  88 IGPILLTGFITTLATLAAQPVTREYQ-LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSAT 166
Cdd:TIGR01972  80 LLLVLLTALLTLLAILASWESIQKRVkEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAM 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 167 KFILYTAGGSVFLLMGIlgIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYST 246
Cdd:TIGR01972 160 KFFLYTLAGSLLMLLAI--LGLYFLGGGTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 247 CMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISD 326
Cdd:TIGR01972 238 SVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNE 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 327 TGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIi 406
Cdd:TIGR01972 318 LGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGS- 396
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 407 tsqkylFMMKILITFVTAIGMILTPIYLLSILRQMFYGyKFFNTPNAYFFDSGPRELFISISILIPVIGIGIYPDFIFSF 486
Cdd:TIGR01972 397 ------FKVNPVVAFLAALGIVLAAAYMLTLYKRVFFG-ELSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDL 469
                         490
                  ....*....|..
gi 1678641913 487 SVDKVEAILANF 498
Cdd:TIGR01972 470 TEPSVNNLLSQV 481
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
5-498 7.62e-138

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 406.51  E-value: 7.62e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   5 FPWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCyHFQLDDPLIQLTENYKWINFFDFYWRLGID 84
Cdd:PRK05846    3 WPLLSLLIFLPLIGGLLVLLTERFGARLARWIALIGTLLTLLLSLVLWI-GFDSSNAGFQFVEKHPWIPRFGISYHLGVD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  85 GLSIGPILLTGFITTLATLAAQPVTREYQLFYF-LMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLY 163
Cdd:PRK05846   82 GISLLLVVLTALLTPLAVLASWEEIKKRVKFYMaALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNRIY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 164 SATKFILYTAGGSVFLLMGILGIGLYGSNEP-TLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEA 242
Cdd:PRK05846  162 AATKFFLYTLLGSLLMLVAIIYLVVVYYNATgTFDIADLLNLPLPPGVQYWLFLAFFIAFAVKMPMFPLHTWLPDAHVQA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 243 HYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG 322
Cdd:PRK05846  242 PTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIF 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 323 SISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVF 402
Cdd:PRK05846  322 AGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 403 FGiitsqkyLFMMKILITFVTAIGMILTPIYLLSILRQMFYGYKffNTPNAYFFDSGPRELFISISILIPVIGIGIYPDF 482
Cdd:PRK05846  402 LG-------SFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPV--KNEVAKLKDLNGRELLILLPLVALLLLLGVYPKP 472
                         490
                  ....*....|....*.
gi 1678641913 483 IFSFSVDKVEAILANF 498
Cdd:PRK05846  473 LLDVIHPSVENLLQWV 488
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
8-476 1.36e-92

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 290.45  E-value: 1.36e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWRLGIDGLS 87
Cdd:PRK06473    2 LSALIWIPLLGAILIGFWPSGINGKLARSVALVIASVLLLLSLVLAFQFDPGNPNQQFTEFIPWIDSLGLSYHLGVDGLS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  88 IGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATK 167
Cdd:PRK06473   82 LPLLVLNSLLTLIAIYSSDESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATK 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 168 FILYTAGGSVFLLMGILGIGlYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTC 247
Cdd:PRK06473  162 FLLYTAISGILILVSFLGLV-WLSGASSFDYEPLRSHTLPLSTQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 248 MLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDT 327
Cdd:PRK06473  241 VLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 328 GLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIP---MPKIFTIFTILSMASLALPGMSGFVAELIVF-- 402
Cdd:PRK06473  321 SILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLNPergLPITGSLMILGVMASAGIPGMVGFIAEFLVFrg 400
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1678641913 403 -FGIITSQKYLFMmkilitfvtaIGMILTPIYLLSILRQMFYGY---KFFNTPNAYFFDSGPRelfISISILIPVIGI 476
Cdd:PRK06473  401 sFPIFPVQTLLCM----------IGTGLTAVYFLLLVNRVFFGRltaELSNLPRVLWSERLPA---LVLAVLIVVLGI 465
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
8-404 3.90e-80

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 258.10  E-value: 3.90e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPhRGNKVIRWYSICICLIDLLLTTYAFC-YHFQLDDPLIQLTENYKWINFFDFYWRLGIDGL 86
Cdd:PRK07363    2 LSVLLWLPILGAIIIGFFP-GNLPSARLRQITLVFAVLVLAWSLFLlTQFDLSDPGMQFQEYLPWNEPLGLSYSLGVDGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  87 SIGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSAT 166
Cdd:PRK07363   81 SLPLLVLNSLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 167 KFILYTAGGSVFLLMGILGIGLYgSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYST 246
Cdd:PRK07363  161 KFLIYTAVSGLLVLAAFLGIVWL-SGSTSFDYDAISTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 247 CMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISD 326
Cdd:PRK07363  240 AILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQ 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 327 TGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIP---MPKIFTIFTILSMASLALPGMSGFVAELIVFF 403
Cdd:PRK07363  320 LSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399

                  .
gi 1678641913 404 G 404
Cdd:PRK07363  400 G 400
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
7-428 4.13e-67

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 221.94  E-value: 4.13e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   7 WLTIVVVFPIAAGSLIFLFPHRGnKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTEnykWINFFDFYwrLGIDGL 86
Cdd:COG0651     4 LLILPVLLPLLAAALLLLLGRRR-RLQRALSLLASLALLALALALLLQVLAGGPLVYALGG---WPAPFGIV--LVADRL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  87 SIGPILLTGFITTLATLAAQPVTREYQ---LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLY 163
Cdd:COG0651    78 SALFLLLTALVALAVLLYSIGYMRHERrgrRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALR 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 164 SATKFILYTAGGSVFLLMGIlgIGLYGSNePTLNFETLTN--QSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGE 241
Cdd:COG0651   158 AGLKYLILNLVGSALFLLGV--GLLYGAT-GTLNMADLAArlAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 242 AHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFC-PWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILG 320
Cdd:COG0651   235 APSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLG 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 321 IGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELI 400
Cdd:COG0651   315 LGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWL 394
                         410       420
                  ....*....|....*....|....*....
gi 1678641913 401 VFFGIITSQKYLFMMKILIT-FVTAIGMI 428
Cdd:COG0651   395 LLQAALEAGAWLLAAVLLLSsLLTLAYFV 423
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
62-483 2.29e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 200.29  E-value: 2.29e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  62 LIQLTENYKWINFFdfywrLGIDGLSIGPILLTGFITTLATLAAQPVTRE-YQLFYFLMLAMYSGQIGPFSSRDILLFFI 140
Cdd:MTH00204   65 IISPTLNFQWGPLV-----FAVDGVSLFFILLTTLLIPICILISWKSIKFlFKEFLLCLLFLEVLLIGVFSVLDLLLFYI 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 141 MWELELIPVYLLLAMWGGKK-RLYSATKFILYTAGGSVFLLMGILGIGlygSNEPTLNFETLTNQSYPVALEILLYTAFL 219
Cdd:MTH00204  140 LFEGILIPMFLLIGIWGSREeKVRASYYFFFYTFAGSVFMLLGIFQLY---SITGTTDYQILLNIKLPLSIQKWLLVGFF 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 220 IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQ 299
Cdd:MTH00204  217 LSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQ 296
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 300 RNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIF 379
Cdd:MTH00204  297 VDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIM 376
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 380 TILSMASLALPGMSGFVAElivFFGIITSQKYLFMMKILITFvtaiGMILTPIYLLSILRQMFYGYkffnTPNAYFF--D 457
Cdd:MTH00204  377 LVLSLANMGFPLSCNFVGE---FFSLLAAFEYSLGLGVLVTS----GMVWSAAYSLYLYNRISFGG----GSNYLLFsrD 445
                         410       420
                  ....*....|....*....|....*.
gi 1678641913 458 SGPRELFISISILIPVIGIGIYPDFI 483
Cdd:MTH00204  446 LNRRELLAILPLIIAIFLLGIVPFII 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
8-483 7.92e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 182.94  E-value: 7.92e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPHrgNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWR---LGID 84
Cdd:MTH00217    2 LELVFILPLIGILHLLIIPR--DNIVRLKKIALEWSLLTLTATILLWASFDGEGQFQAIKKFEWIPGIEPVFGpvvFAVD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  85 GLSIGPILLTGFITTLATL----AAQPVTREYQLFYFLMLAMYsgqIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKK 160
Cdd:MTH00217   80 GISIFFLILTALLTPICILiswnSIKFLIKEFLLCLLVIEILL---MGVFTILDLVGFYILFEGILIPMFLIIGIWGSRE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 161 -RLYSATKFILYTAGGSVFLLMGIlgIGLYgSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTH 239
Cdd:MTH00217  157 eKVQASYYFFFYTFIGSVFMLLGI--FTLY-SYAGTTDYQALCCLKIEKELQYFIFLGFFLSLAIKIPKIPFHIWLPQAH 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 240 GEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIL 319
Cdd:MTH00217  234 VEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 320 GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAEl 399
Cdd:MTH00217  314 GIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGE- 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 400 ivFFGIITSQKYLFMMKILitfvTAIGMILTPIYLLSIlrqmfYGYKFFNTPNAYFF---DSGPRELFISISILIPVIGI 476
Cdd:MTH00217  393 --FLSLLAAFEYSYIVGVL----ASLGMVLSAGYSIYL-----YNRVCFGAPSKYLYfsrDLNRREFYVLLPLVFLIYLM 461

                  ....*..
gi 1678641913 477 GIYPDFI 483
Cdd:MTH00217  462 GIFPFII 468
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
81-487 4.29e-50

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 178.15  E-value: 4.29e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAAQPVTREYQ-LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGK 159
Cdd:PRK08375   73 LRADSLSALFLLVTSILAIAALLYAIGYGEHRQtRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMGGDR 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 160 KRLYSATKFILYTAGGSVFLLMGIlgIGLYGSNEpTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTH 239
Cdd:PRK08375  153 RALAAARKYLIVGLIGSTFLLIGV--GLLYGVTG-TLNMADLAGALAENPTVVTAFGFVLLALALKAAVFPLHTWLPRAY 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 240 GEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPW---LMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGF 316
Cdd:PRK08375  230 PAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLgwlLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGY 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 317 IILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFV 396
Cdd:PRK08375  310 ILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFV 389
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 397 AELIVFFGIITSQKYLFMMKILitfvtaIGMILTPIYLLSILRQMFYGyKFFNTPNAYFFDSGPRELFISISILIPVIGI 476
Cdd:PRK08375  390 SKWYLVVGAVEAGQWLVLAVLL------ASSLLALLYFLRIWYRAFFG-PPPPGSEAPKQEAPLGMLAPSLALALLSLLL 462
                         410
                  ....*....|.
gi 1678641913 477 GIYPDFIFSFS 487
Cdd:PRK08375  463 GIYAGPLLQLA 473
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
21-483 2.12e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 170.12  E-value: 2.12e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  21 LIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHfqlddpliQLTENYKWINFFDFywrLGIDGLSIGPILLT------ 94
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWF--------KWSSEVGWSFSNLY---LSYDPLSSPLVILScwllpl 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  95 GFITTLATLAAQPVTREyQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKK-RLYSATKFILYTA 173
Cdd:MTH00206   75 MFLASQNHMKNEPINRQ-RIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKeRLNAGYYFLFYTL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 174 GGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYpvaLEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGI 253
Cdd:MTH00206  154 IGSLPLLIALLFLQNSLGSLSLYILYFSKLTTW---NNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGV 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 254 LLKMGAYGLVRINMELFSHAHSIFCPwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAI 333
Cdd:MTH00206  231 LLKLGGYGMMRIILILGPSTKLSSYF-FIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGAL 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 334 LQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLF 413
Cdd:MTH00206  310 LLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTL 389
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 414 mmkilitFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNayFFDSGPRELFISISILIPVIGIGIYPDFI 483
Cdd:MTH00206  390 -------PLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLS--LSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
81-484 6.97e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 167.41  E-value: 6.97e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAA-QPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGK 159
Cdd:MTH00226   98 FAVDGISIYFIILTGFIVPCSILISwHSVKYLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSR 177
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 160 K-RLYSATKFILYTAGGSVFLLMGILGI-GLYGsnepTLNFETLTNQSY--PVALEILLYTAFLIAFAVKSPIIPLHTWL 235
Cdd:MTH00226  178 EeKMQAAYYFFFYTLIGSVLMLLCLFSLyNIHG----TTDYLTLASCSHvvSEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 236 PDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMG 315
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 316 FIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 396 VAElivFFGIITSqkylFMMKILITFVTAIGMILTPIYLLSILRQMFYGYKffNTPNAYFFDSGPRELFISISILIPVIG 475
Cdd:MTH00226  414 IGE---YLSILSS----FNWNPIIGVFVCSGVILSAVYSFYFANRVTFGAP--GNLITFARDVNRREFYITASMVFFAFL 484

                  ....*....
gi 1678641913 476 IGIYPDFIF 484
Cdd:MTH00226  485 IGIYPIFIL 493
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
81-424 9.48e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 165.01  E-value: 9.48e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAAQP---VTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:MTH00150   20 FSVDSMSSLLISLSLWISGLMMLASQKsvkLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLLILGWG 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GK-KRLYSATKFILYTAGGSVFLLMGILGIGL-YGSNEPTLNFETLTNQSYPVALEILLYTAFLiafaVKSPIIPLHTWL 235
Cdd:MTH00150  100 YQpERLQAGMYMMLYTVGASLPLLLVILWMSSsYGSSFMLLISSLRKLLSSMGLWGLLVFLAFL----VKLPMYPFHLWL 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 236 PDTHGEAHYSTCMLLAGILLKMGAYGLVRINMeLFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMG 315
Cdd:MTH00150  176 PKAHVEAPVAGSMILAGILLKLGGYGILRMMM-VFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 316 FIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRL--RLLYLdeMGGMAIPMPKIFTIFTILSMASLALPGMS 393
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVhsRSLFL--SKGMLMLYPSLSLWWFLFCIINMAAPPSL 332
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1678641913 394 GFVAELIVFFGIITSQKYLFMMKILITFVTA 424
Cdd:MTH00150  333 NLLSEIMIFPSLISYSPWFFVPLGLMVFLSG 363
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
62-484 1.97e-44

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 162.45  E-value: 1.97e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  62 LIQLTENYKWINFFdfyWRLGIDGLSIGPILLTGFITTLATLAAQPVTREY-----QLFYFLMLAMYSGQIGPFSSRDIL 136
Cdd:MTH00044   41 LLNNHWSSSWHNLS---LSLATDSLSSPLIILSCWLAPLSLLASINHLSNNspnnqRTFISLIIIILTALIITFSSLELI 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 137 LFFIMWELELIPVYLLLAMWGGKK-RLYSATKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYPVALEILLY 215
Cdd:MTH00044  118 LFYIAFETTLIPTLILITRWGAQKeRIQAGLYFLFYTLFGSLPLLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWW 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 216 TAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVR-------INMELFSHAHSIFCPWLMILGSIq 288
Cdd:MTH00044  198 IFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRlinlfslPSANNISFILIVFCCWGALITSI- 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 289 iiyaasTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGM 368
Cdd:MTH00044  277 ------ICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGF 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 369 AIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITsqkylfmMKILITFVTAIGMILTPIYLLSILrQMFYGYKFF 448
Cdd:MTH00044  351 KLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIIS-------WSILSFPIIGLATVFGAIYSLLIY-QLTNSGSFP 422
                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 1678641913 449 NTpNAYFFDSGPRELFISISILIPVIGIGIYPDFIF 484
Cdd:MTH00044  423 SW-ISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
132-420 3.21e-44

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 157.48  E-value: 3.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 132 SRDILLFFIMWELELIPVYLLLAMWGGKKRLYSAT-KFILYTAGGSVFLLMGILGIGLYGSnepTLNFETLTNQSYPVAL 210
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGmKYFLLTLLGSSILLFGISLMYNYTG---TLSFDELSKALTGGLN 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 211 EI---LLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRInMELFSHAHSIFCPWLMILGSI 287
Cdd:pfam00361  78 SSgllLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRR-SLLYLPSSPFIQQILLILAII 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 288 QIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAG-TSYDRLRLLYLDEMG 366
Cdd:pfam00361 157 SMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGsVIYRRVHTRNIRDYG 236
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1678641913 367 GMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILIT 420
Cdd:pfam00361 237 GLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
96-438 8.80e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 160.36  E-value: 8.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  96 FITTLATLaaQPvtreyqlfyFLMLAmysgqigpFSSRDILLFFIMWELELIPVYLLLAMWGG-KKRLYSATKFILYTAG 174
Cdd:MTH00124   95 FLTTLILL--QT---------FLILA--------FSATELTLFYIMFEATLIPTLILITRWGNqPERLSAGTYFLFYTLI 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 175 GSVFLLMGILGIGLYgSNEPTLNFETLTNQSYPVAL-EILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGI 253
Cdd:MTH00124  156 SSLPLLIAILYLHNQ-TGTLSLPMLQLTHPTLTNSWtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 254 LLKMGAYGLVRINMELFSHAHSIFCPwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAI 333
Cdd:MTH00124  235 LLKLGGYGIIRITLLLPPLSNTLHYP-FLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAM 313
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 334 LQIISHGFIGAALFFLAGTSYDRL--RLLYLdeMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIvffgIITSqky 411
Cdd:MTH00124  314 ILMIAHGLTSSMLFCLANTNYERThsRTLLL--TRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELT----IMTS--- 384
                         330       340
                  ....*....|....*....|....*..
gi 1678641913 412 LFMMKILITFVTAIGMILTPIYLLSIL 438
Cdd:MTH00124  385 LFNWSPTTIILTGLATLITASYTLYMF 411
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
81-435 1.50e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 154.30  E-value: 1.50e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAAQ------PVTReyQLFYFLMLAMYS-GQIGPFSSRDILLFFIMWELELIPVYLLL 153
Cdd:MTH00068   56 FGIDQISSPLLILTCWLLPLMILASQnhlknePINR--QRTYISMLIILQlTLILAFSATELILFYIFFEATLIPTLIII 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 154 AMWGGKK-RLYSATKFILYTAGGSVFLLMGILGI-GLYGSNEPTLnFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPL 231
Cdd:MTH00068  134 TRWGNQEeRLNAGTYFLFYTLAGSLPLLIALLILqNSLGSLSLIL-LELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGL 212
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 232 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPwLMILGSIQIIYAASTSFGQRNLKKRIAYSSV 311
Cdd:MTH00068  213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYP-FIILALWGVLMTSLICLRQTDLKSLIAYSSV 291
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 312 SHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRL--RLLYLdeMGGMAIPMPKIFTIFTILSMASLAL 389
Cdd:MTH00068  292 SHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERThsRTLLL--LRGAQTILPLMATWWLLSNLSNMAL 369
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1678641913 390 PGMSGFVAELIvffgIITSqkyLFMMKILITFVTAIGMILTPIYLL 435
Cdd:MTH00068  370 PPSPNLWGELT----IMVS---LFNWSNWTILITGLGTLITAAYTL 408
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
62-424 3.47e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 153.00  E-value: 3.47e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  62 LIQLTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAQPVTR---EYQLFYFLMLAMYSGQIGPFSSRDILLF 138
Cdd:MTH00163   33 FLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKknnYSNLFLFLILFLLIFLLLTFSSMNLLLF 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 139 FIMWELELIPVYLLLAMWGGK-KRLYSATKFILYTAGGSVFLLMGILgigLYGSNEPTLNFETLTNQSYpvaLEILLYTA 217
Cdd:MTH00163  113 YIFFESSLIPTLFLILGWGYQpERLQAGIYLLFYTLFASLPLLVGIF---YLYNNSGSLSFFLLNFFGS---LNFLWYLS 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 218 FLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRInMELFSHAHSIFCPWLMILGSIQIIYAASTSF 297
Cdd:MTH00163  187 MILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV-MSFFSKLGLKFNYIWISISLVGGVIVSLICL 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 298 GQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRL--RLLYLDEmgGMAIPMPKI 375
Cdd:MTH00163  266 RQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLgsRSLLINK--GLLNFMPSM 343
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1678641913 376 FTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTA 424
Cdd:MTH00163  344 SLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSA 392
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
81-438 1.67e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 148.95  E-value: 1.67e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAAQ------PVTREyQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLA 154
Cdd:MTH00127   57 MATDPLSTPLLVLTCWLLPLMILASQnhtapePINRQ-RMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIIT 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 155 MWGGKK-RLYSATKFILYTAGGSVFLLMGILgigLYGSNEPTLNFETLtNQSYPVAL----EILLYTAFLIAFAVKSPII 229
Cdd:MTH00127  136 RWGNQTeRLNAGTYFLFYTLAGSLPLLVALL---LLQNSTGTLSMLTL-QYSQPLQLsswaDKLWWAGCLLAFLVKMPLY 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 230 PLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWlMILGSIQIIYAASTSFGQRNLKKRIAYS 309
Cdd:MTH00127  212 GVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPF-IILALWGIIMTGSICLRQTDLKSLIAYS 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 310 SVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLAL 389
Cdd:MTH00127  291 SVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLAL 370
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1678641913 390 PGMSGFVAELIvffgIITSqkyLFMMKILITFVTAIGMILTPIYLLSIL 438
Cdd:MTH00127  371 PPLPNLMGELM----IITS---LFNWSPWTLALTGLGTLITAGYSLYMF 412
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
81-424 3.52e-36

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 139.49  E-value: 3.52e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAAQPV---TREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:MTH00014   55 LSSDMLSAPLITLTLWITALMILASFKIfqnNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWG 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GK-KRLYSATKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYPVALEILLYtafLIAFAVKSPIIPLHTWLP 236
Cdd:MTH00014  135 YQpERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSMLMSSMEPPSIYLMNLWWLIT---ILAFMVKMPLYTVHLWLP 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 237 DTHGEAHYSTCMLLAGILLKMGAYGLVRINmELFSHAHSIFCPWLMilgSIQIIYAASTSF---GQRNLKKRIAYSSVSH 313
Cdd:MTH00014  212 KAHVEAPVAGSMILAGILLKLGGYGLLRMS-SLFMHINKSLSAPFS---SISLVGAVITSLiciRQPDLKSLIAYSSVGH 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 314 MGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYD--RLRLLYLdeMGGMAIPMPKIFTIFTILSMASLALPG 391
Cdd:MTH00014  288 MGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYEttHTRSLFL--TKGLLSLFPTMTMWWFLLSAANMAAPP 365
                         330       340       350
                  ....*....|....*....|....*....|...
gi 1678641913 392 MSGFVAELIVFFGIITSQKYLFMMKILITFVTA 424
Cdd:MTH00014  366 SINLLSEIMLLTSILSSSLSTAILLAITSFLAA 398
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
10-425 7.76e-36

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 139.72  E-value: 7.76e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  10 IVVVFPIAAgSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLtenykwinFFDFYWRLGI----DG 85
Cdd:PRK12667   12 LLVLFAFLL-PLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVYSSNKPIVYL--------FGGWPAPIGIvyevDL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  86 LSIGPILLTGFITTLATLAAQPVTREYQL---FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKR- 161
Cdd:PRK12667   83 LGALLGLLTALVMFLILIYSYWYLEHESGpewYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDa 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 162 LYSATKFILYTAGGSVFLLMGILGI-GLYGsnepTLNFETLT--------NQSYPVALEILLYTA-----FLIAFAVKSP 227
Cdd:PRK12667  163 VEAAIKYALIGAVGTTLYFLALAFLyATFG----TLNMADLSakirglsfPLTGGLAGNPPLALGvalalALWAFTIKAA 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 228 IIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHS------IFCPWLMILGSIQIIYAASTSFGQRN 301
Cdd:PRK12667  239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSlidfraALSPILIILGAVSAIIGALMMVVQKD 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 302 LKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTI 381
Cdd:PRK12667  319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1678641913 382 LSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTAI 425
Cdd:PRK12667  399 GALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISL 442
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
69-425 2.24e-34

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 134.34  E-value: 2.24e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  69 YKWINFFDFYwrlgiDGLSIGPILLTGFITTLATLAAQPV---TREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELE 145
Cdd:MTH00205   46 TSFISSSFSF-----DSLSLPLIMLSFWISLLMVLASYKVfksNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEAS 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 146 LIPVYLLLAMWGGK-KRLYSATKFILYTAGGSVFLLMGILGIGlygSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAV 224
Cdd:MTH00205  121 LIPTLILILGWGYQpERLQASMYMMMYTLCASLPLLIGLFFLN---SLNFSLSMFFNFPLNFSDFYLFLYWIFLMLAFLV 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 225 KSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFshahSIFCPWLMILGSIQIIYAASTSF---GQRN 301
Cdd:MTH00205  198 KLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLY----KLNSNFSELFFSISLWGGVMTGMiclRQVD 273
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 302 LKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTI 381
Cdd:MTH00205  274 LKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFL 353
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1678641913 382 LSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTAI 425
Cdd:MTH00205  354 LISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGA 397
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
92-486 5.38e-33

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 132.43  E-value: 5.38e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  92 LLTGFITTLATLAAQPVTREYQLFYFLMlaMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILY 171
Cdd:PRK08668   79 LLVIFSVAFFMVSEKTKNDAYFNMFALM--SLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKKESRKASLKYFVLS 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 172 TAGGSVFLLmgilGIGLYGSNEPTLNFETLTNQSY--PVALEILLYTAFLIAFAV-KSPIIPLHTWLPDTHGEAHYSTCM 248
Cdd:PRK08668  157 AIGAYAMLY----AIFLIYAKTGTFDFADISQGLIndTSTGFALIVFLFLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSA 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 249 LLAGILLKMGAYGL-----VRINMELFS-----HAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFII 318
Cdd:PRK08668  233 VLSGQLSKLGAYGFllvlyVLPGTKLFSefgtyRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 319 LGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTI--FTILSMAslALPGMSGFV 396
Cdd:PRK08668  313 VGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMylVAIISLA--GIPPMSGFA 390
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 397 AELIVFFGIITsqKYLFmmkiLITFVTAIGMILTPIYLLSILRQMFYGYKffnTPNAYFFDSGPRELFISISIL-IPVIG 475
Cdd:PRK08668  391 SKWLIFEALIS--KGMP----ITAFMAFFGSIGSFLYVFRPLAGVFLGQL---PSDHKDVKEAPLPMLIPMAILvLLNVV 461
                         410
                  ....*....|.
gi 1678641913 476 IGIYPDFIFSF 486
Cdd:PRK08668  462 FGVAPGLVLQE 472
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
84-438 9.59e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 126.93  E-value: 9.59e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  84 DGLSIGPILLTGFITTLATLAAQ------PVTREyQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:MTH00110   59 DSLSTPLLILTTWLLPLMLMASQhhlskePLTRK-KLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWG 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GK-KRLYSATKFILYTAGGSVFLLMGILGIGlygSNEPTLNFETLTNQSYPVALE---ILLYTAFLIAFAVKSPIIPLHT 233
Cdd:MTH00110  138 NQtERLNAGLYFLFYTLVGSLPLLVALLYIQ---NNLGSLNFLLLQLWAQPLPNSwsnNLLWLACMMAFMVKMPLYGLHL 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 234 WLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMiLGSIQIIYAASTSFGQRNLKKRIAYSSVSH 313
Cdd:MTH00110  215 WLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 314 MGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRL--RLLYLDEmgGMAIPMPKIFTIFTILSMASLALPG 391
Cdd:MTH00110  294 MALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIhsRTMILAR--GLQTLLPLMATWWLLASLTNLALPP 371
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1678641913 392 MSGFVAELIVffgIITSQKYLFMMKILitfvTAIGMILTPIYLLSIL 438
Cdd:MTH00110  372 TINLIGELFV---IMSSFSWSNITIIL----MGLNMLITALYSLYML 411
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
7-495 7.67e-30

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 121.98  E-value: 7.67e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   7 WLTIV-VVFPIAAGSLIFLFPHRgNKVIRWYSICiCLIDLLLTTYAFCYHFQLDDPLIqltenykwINFFDFYWRLGI-- 83
Cdd:PRK12663    4 NLLILpMLLPLLCGLVLVFLRNR-DRLQRYLAIG-TLTILTLISLALLIYVQRHGPIT--------LDFGGWLPPFGIqf 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  84 --DGLSIGPILLTGFITTLATLAA----QPVTREYQLFYFLMLAMySGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:PRK12663   74 tgDSLSALMVTTASFVATAIMAYGfgdiEHSGRRYGFPPFILLLM-AGVIGSFLTGDLFNLYVWFEVMLIASFVLITLGQ 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GKKRLYSATKFILYTAGGSVFLLMGIlGIgLYGSNEpTLNFETLT---NQSYPVALEILLYTAFLIAFAVKSPIIPLHtW 234
Cdd:PRK12663  153 EREQLRGAIKYVVLNLIGSWLFLLGI-GL-LYGTFG-TLNMAHIAmrlNDMGDTATLTTIALLFLLAFGMKAALFPFM-W 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 235 LPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHM 314
Cdd:PRK12663  229 LPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSI 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 315 GFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSG 394
Cdd:PRK12663  309 GFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSG 388
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 395 FVAELIVFFGIITSQKYLFMMKILITfvtaigMILTPIYLLSILRQMFYGYkffNTPNAYFFDSGPRELFISISILI-PV 473
Cdd:PRK12663  389 FWGKVLLVQGALDNGAYILLALMLIT------SLITMYSLFRIFFLAYWGD---KDGEEVNFKPIPLYRKLPLSILAvVV 459
                         490       500
                  ....*....|....*....|..
gi 1678641913 474 IGIGIYPDFIFSFSVDKVEAIL 495
Cdd:PRK12663  460 IAMGIAAEPLLNLTQDAAEGLL 481
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
115-483 1.42e-29

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 121.74  E-value: 1.42e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 115 FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWggKKRLYSATKFILYTAGGSVFLLMGILGIGLYGSNEP 194
Cdd:PRK08376  123 YYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFR--NDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYG 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 195 TLNFETLTN--QSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYS-TCMLLagILLKMGAYGLVRINMELFS 271
Cdd:PRK08376  201 TLNMAYLAVkmSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSiSAMLL--VIKQAGLYALARVLFSIYG 278
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 272 -HAHSIFCPWLM-ILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG------------SISDTGLNGAILQII 337
Cdd:PRK08376  279 pAINLATVGWVIiILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGvglaalgdpamaSYGEIALAGGIYHIV 358
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 338 SHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFfgiitsqKYLFMMKI 417
Cdd:PRK08376  359 NHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIY-------ESSALFNP 431
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1678641913 418 LITFVTAIGMILTPIYLLSILRQMFYGYKffnTPNAYFFDSGPRELFISISIL-IPVIGIGIYPDFI 483
Cdd:PRK08376  432 ILGVIAMIGSVLTLASFVKVFHTAFFGPP---SEKVMNVKEPPKPMLVPMLILaIAIIGMGLFPWQI 495
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
7-444 1.02e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 116.79  E-value: 1.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   7 WLTIVVVFPIAAGSLIFLFPHR-GNKVIRWYSICICLIDLLLTTYAFcYHFQLDDPLIQLtenYKWINF--FDFYWRLGI 83
Cdd:COG1009     3 LLWLIPLLPLLGALLAGLLGRRlGRRAAGWLAALAPLAAFVLSLLLF-PAVLGGEVVVEL---YTWIPVgsLGLDFGFRL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  84 DGLSIGPILLTGFITTLATLAA-------QPVTREYQLFYFLMLAMysgqIGPFSSRDILLFFIMWELELIPVYLLLAMW 156
Cdd:COG1009    79 DGLSLLMLLLVTGVGLLVHIYSigymsgdPGLARFFAYLLLFMAAM----LGLVLSDNLLLLFVFWELVGLCSYLLIGFW 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 157 GGKKR-LYSATKFILYTAGGSVFLLMGILGIGLYGSnepTLNFETLTNQSyPVALEILLYTAFLIAFAV----KSPIIPL 231
Cdd:COG1009   155 YEKPSaRRAARKAFLVTRVGDLGLLLGILLLGAIAG---TLNFSELLAAA-PTILSSPLLTLILLLLLLgafgKSAQFPL 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 232 HTWLPDTHgEA--------HYSTcMLLAGILLkmgaygLVRINmELFSHAHSIFcPWLMILGSIQIIYAASTSFGQRNLK 303
Cdd:COG1009   231 HFWLPDAM-EGptpvsallHAAT-MVKAGVYL------LARLS-PLFALSPVWL-TVVAIIGAITALFAALIALAQTDIK 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 304 KRIAYSSVSHMGFIILGIGSisdTGLNGAILQIISHGFIGAALFFLAG----TSYDRlrllYLDEMGGMAIPMPKIFTIF 379
Cdd:COG1009   301 RVLAYSTVSQLGYMFLALGV---GAYVAALFHLLTHAFFKALLFLGAGsvihATGTR----DIRKMGGLRKKMPITAITF 373
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1678641913 380 TI--LSMAslALPGMSGFVAELIVFFGIITSQKYlfmmKILITFVTAIGMILTPIYLLSILRQMFYG 444
Cdd:COG1009   374 LIgaLSLA--GIPPFAGFFSKEAILEAALEAGGL----GPLLLAVALLGAFLTAFYSFRLFFLVFFG 434
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
7-486 3.45e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 114.06  E-value: 3.45e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   7 WLTIVVVFPIAAGSLIFLF-----PHRGNKVIRWYSICICLIDLLLTTYAFCYHFQlddpliqltenykwINFFDFYWrl 81
Cdd:COG1007     4 LLALLPEIILLLGALVLLLldlflPRRSRRLLAGLALLGLLLALALLLLALGGGTG--------------TAFGGMFV-- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  82 gIDGLSIGPILLTGFITTLATLAAQPVTREYQL----FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:COG1007    68 -VDGFALFFKLLILLAALLVLLLSRDYLERRGLlrgeFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAFRR 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GKKR-LYSATKFILYTAGGSVFLLMGI-LGIGLYGSneptLNFETLTNQ-SYPVALEILLYTAF---LIAFAVKSPIIPL 231
Cdd:COG1007   147 DDRRsSEAALKYFLLGALSSGFLLYGIsLLYGATGS----LNLAGIAAAlAAGGANSPLLLLGLvlvLAGLAFKLSAVPF 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 232 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSV 311
Cdd:COG1007   223 HMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 312 SHMGFIILGIGSISDTGLNGAILQIISHGFIGAALF-FLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILsMASLA-L 389
Cdd:COG1007   303 AHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIF-LLSLAgI 381
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 390 PGMSGFVAELIVFFGIITSQKYlfmmkilitFVTAIGMILTPI---YLLSILRQMfygykFFNTPNAYFFDSGPRELFIS 466
Cdd:COG1007   382 PPTAGFFGKFYVFSAAVEAGLY---------WLAVIAVLNSVIsayYYLRVVKAM-----YFDEPEEEAPISAPPGLRVA 447
                         490       500
                  ....*....|....*....|.
gi 1678641913 467 ISIL-IPVIGIGIYPDFIFSF 486
Cdd:COG1007   448 LVIAaLLVLLLGIFPGPLLDL 468
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
1-412 1.38e-26

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 112.35  E-value: 1.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   1 MTNYFPwltIVVVFPIAAGSLIFLFPhrgnKVIRWYSICICLIDLLlttYAFCYHFQLDDPLIQLTENYKWInffdfywr 80
Cdd:PRK07234    1 MTSLTP---VWIALPFLLGFAIYLLP----KLDRNLALGMAIVSAV---YALGLVASMVPLELTLLDNFGVT-------- 62
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATLAAQPVTREYqlFYFLMLAMYSGQIG-PFSSRDILLFFIMWELELIPVYLLLAMWGGK 159
Cdd:PRK07234   63 LRADALSGYFILTNALVTLAVIFYCWESAKTR--FFYAQLLILHGSVNaAFVCADLISLYVALEVLSIATFLLVAYPRTD 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 160 KRLYSATKFILYTAGGSVFLLMGIlgIGLYGSNEpTLNFETLTNQSyPVALEILLytaflIAFAVKSPIIPLHTWLPDTH 239
Cdd:PRK07234  141 RAIWVGLRYLFYSNVAMLFYLIGA--VLVYQANG-TFAFSGLATAD-PEAFALIA-----LGLLVKGGIFVSGLWLPLTH 211
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 240 GEAHYSTCMLLAGILLKMGAYGLVRInmelfSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIL 319
Cdd:PRK07234  212 SEAEPPVSALLSGVVVKAGVFPLVRC-----ALDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA 286
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 320 GigsisdtGLNGAILQiISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPkiftiftiLSMASLA---LPGMSGFV 396
Cdd:PRK07234  287 A-------PLVGGLYA-LAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIP--------LTMASFSiagFPLLAGFV 350
                         410
                  ....*....|....*.
gi 1678641913 397 AELIVFFGIITSQKYL 412
Cdd:PRK07234  351 SKVLTLKNLLPWQAIA 366
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
83-424 3.50e-26

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 111.39  E-value: 3.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  83 IDGLSIGPILLTGFITTLATLAAQPVT-----------REYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYL 151
Cdd:PRK08676   61 IDHLGIFVVLIASVVFILAALYARGYVdhllsngeldpENLKVFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVFSAM 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 152 LLAMWGGKKRLYSATKFILYTAGGSVFLLMGIL---GIGLYGSNEPTLNFETLTNQS--YPVALEILLYTAFLIAFAVKS 226
Cdd:PRK08676  141 LIAILSARENIDAALKYIFIASTAMIFAFIGLIflfSLTRQALGTGTLNWTELAAHAslLSPSVLGASFLFIFIGFLAKS 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 227 PIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELF-SHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKR 305
Cdd:PRK08676  221 GLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKL 300
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 306 IAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMA 385
Cdd:PRK08676  301 IAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAA 380
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1678641913 386 SLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTA 424
Cdd:PRK08676  381 IIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAA 419
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
84-495 2.03e-25

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 108.88  E-value: 2.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  84 DGLSIGPILLTGFITTLATLAAQP---VTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKK 160
Cdd:PRK07691   76 DMFAALLVLTSSIITFLVILYSFQtigIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGGTKI 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 161 RLYSATKFILYTAGGSVFLLMGIlgiGLYGSNEPTLNFETLTNQSYPVALE-----ILLYTAFLIAFAVKSPIIPLHTWL 235
Cdd:PRK07691  156 QLRESIKYVLINVVSSAFFVVAV---AILYSVVGTLNMADISVKIAELSAGqtgliTVVAILFLFVFATKAGLFPLYFWL 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 236 PDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMG 315
Cdd:PRK07691  233 PGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVG 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 316 FIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTIlSMASLA-LPGMSG 394
Cdd:PRK07691  313 VILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFI-AALSLAgIPPLSG 391
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 395 FVAELIVFFGIITSQKYLFMMKILITFVtaigmiltpIYLLSILRQMFYGykFFNTPNAYFFDSGP---RELFISISILI 471
Cdd:PRK07691  392 FYGKFFIVEGTFEAGFYVSGIIVLLSSL---------LVLYSVIKIFLKG--FWGEPKGYDLNNKVpvkKLLLPAVVLVA 460
                         410       420
                  ....*....|....*....|....
gi 1678641913 472 PVIGIGIYPDFIFSFSVDKVEAIL 495
Cdd:PRK07691  461 ITILYGLGAEPLYPYVKQAAETLY 484
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
81-443 1.48e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 106.36  E-value: 1.48e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  81 LGIDGLSIGPILLTGFITTLATL-AAQPVTREYQL-----FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLA 154
Cdd:PRK12662   72 LRVDILSATMLVLVNFIAVMSVLyGIYPNRKEISVnkipsFYSAFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVA 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 155 MWGGKKRLYSATKFILYTAGGSVFLLmgiLGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAF---AVKSPIIPL 231
Cdd:PRK12662  152 MGRDKKALVAAFEYLIIGTIGATFYL---IGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLFIMvglFIKAALFPF 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 232 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFsHAHSIFCPW-----LMILGSIQIIYAASTSFGQRNLKKRI 306
Cdd:PRK12662  229 HKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVF-KANFVFTTLpfnnvFMILAALAIVFGSVLAILSKDIKRIF 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 307 AYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMAS 386
Cdd:PRK12662  308 AYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMPKITLAFVLLSLSL 387
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1678641913 387 LALPGMSGFVAELIVFFGIITSQKYLFMmkilitFVTAIGMILTPIYLLSILRQMFY 443
Cdd:PRK12662  388 IGMPPTSGFVAKWYILDAFIKSNAWIGL------VVLLVGSGLSVIYVWKIVEALYF 438
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
8-428 1.93e-24

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 106.17  E-value: 1.93e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPHRGnkVIRWYSICICLIDLLLTtyAFCYHFQLDDPliqltenykwiNFFDFYWRLGIDGLS 87
Cdd:PRK06458    7 FALLLLIPLLASLLLFALRKRR--LVATLNVLGITLTLILA--LWLVFTVPDAG-----------EIFAAGLWFFIDDLN 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  88 IGPILLTGFITTLATLAAQPVTRE------------------YQLFYFLM-LAMYSGQIGpfssrdillffIMW---ELE 145
Cdd:PRK06458   72 VFFLALIGVVGFLTSLYSIGYMRHevehgelspvtlrlyygmYQLFLFTMlLALTSNNLG-----------LMWvaiEAT 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 146 LIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGIlgIGLYGSNEPTLN------FETLTNQSYPVALEILLYTAF- 218
Cdd:PRK06458  141 TLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGT--ILVYANAATVMGdgemaiLWTELLKHASLLDPTLMKLAFv 218
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 219 --LIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFC-PWLMILGSIQIIYAAST 295
Cdd:PRK06458  219 flLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPgRLLLIFGLLSVLVAAFF 298
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 296 SFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKI 375
Cdd:PRK06458  299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLT 378
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1678641913 376 FTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTAIGMI 428
Cdd:PRK06458  379 GWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAAL 431
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
86-477 2.78e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 102.59  E-value: 2.78e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  86 LSIGPILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSrDILLFFIMWELELIPVYLLL-------AMWGG 158
Cdd:PRK06589   90 LLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSS-DLFTMFVCYELLTISTAFLIghtrnniSLSGG 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 159 KKRLysatKFILYTAggsvfLLMGILGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAfavKSPIIPLHTWLPdT 238
Cdd:PRK06589  169 YKYL----KILMISA-----LLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIA---KTAIFPVHSWLP-A 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 239 HGEAHYSTCMLL-AGILLKMGAYGLVRINMELF--SHAHSIFC--PWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSH 313
Cdd:PRK06589  236 AMVAHYPVSALLhAVIVVKTGLFCIYKILLYIFglSYLQRIFAefNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQ 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 314 MGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMS 393
Cdd:PRK06589  316 LSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFS 395
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 394 GFVAELIVFFGIitSQKYLFMMKILITFVTAIGMILTPIYLLSILrqmFYGYKFFNTPNAYFFDSGPRELFISISILIPV 473
Cdd:PRK06589  396 GFISKFLILLAA--SEQNQPWLSIIVMLVVIASSILSALYLLKIL---SSIYKPSLSENSFITKSLPYLMQISVITCCCA 470

                  ....
gi 1678641913 474 IGIG 477
Cdd:PRK06589  471 LTLF 474
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
9-395 4.89e-23

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 101.77  E-value: 4.89e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   9 TIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWinffdfywRLGIDgLSI 88
Cdd:PRK08377    6 SLLIALPLISAFFVPVIKGIGKSAVRYYLILITLLQTGIAGWVFMEVYTTGKPIIIMAGGWKP--------PVGIN-LYI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  89 GP--------ILLTGFITTLATLAA---QPVTREYQLFYFLMLamysGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:PRK08377   77 GPfaalfvliIAIVSFIMSIFSLKAvevEPIDKYAMLFLLLML----GATGMIATGDIFNLFVFMEITAITAYALTAYNK 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GKKRLYSATKFILYTAGGSVFLLMGILGIglYGSNEpTLN---FETLTNQSYPVALEILLyTAFLIAFAVKSPIIPLHTW 234
Cdd:PRK08377  153 TGEAAEASMKYIVLGGIGSSFFLIGVALI--YGATG-TLNmahIAQLAGTIDPTVAQVGL-ALLIFGLAVEAELFPLNAW 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 235 LPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELF-SHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSH 313
Cdd:PRK08377  229 APDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQnANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQ 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 314 MGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMS 393
Cdd:PRK08377  309 VGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFN 388

                  ..
gi 1678641913 394 GF 395
Cdd:PRK08377  389 VF 390
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
6-398 1.39e-22

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 101.12  E-value: 1.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   6 PWLTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFfdfywRLGIDG 85
Cdd:PRK06521    6 QLLLLSLLLYLALGLAGLLLLRRPRLAIRLSGPTGLLGGLLGLASGLTALFAGPTLAAVLPLGLPFLPF-----HLRLDA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  86 LSIGPILLTGFITTLATLAAQPVTREYQ--------LFYFLMLAmysGQIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:PRK06521   81 LSAFFLLVISLLGAAASLYSLGYFREYEgkgpgamgFFYNLFLA---SMVLVLLADDAFSFLVAWETMSLSSWFLVIANH 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GKKRLYSATKFILYTAGGSVFLLMgiLGIGLYGSNEPTLNFETLTNQSYPVALEILlytAFLIA---FAVKSPIIPLHTW 234
Cdd:PRK06521  158 REAEIRRAGFLYLLMAHAGALAIL--LAFGLLARESGSYDFAAMRAAHLSPFWASL---VFLLAlfgFGAKAGLVPLHVW 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 235 LPDTHGEA--HYSTcmLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQ----IIYAAStsfgQRNLKKRIAY 308
Cdd:PRK06521  233 LPRAHPAApsHVSA--LMSGVMLKVAIYGILRVVFDLLGAPGWWWGVLVLALGAISavlgVLYALA----EHDLKRLLAY 306
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 309 SSVSHMGFIILGIG-----------SISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFT 377
Cdd:PRK06521  307 STIENIGIIFVGLGlamvfiaygmpLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAW 386
                         410       420
                  ....*....|....*....|.
gi 1678641913 378 IFTILSMASLALPGMSGFVAE 398
Cdd:PRK06521  387 AFLIGCLAISALPPLNGFVSE 407
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
16-408 4.54e-21

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 96.72  E-value: 4.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  16 IAAGSLIFLFPHRGNKVirWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTenykWINFFDFYWRLGIDGLSIGPILLTG 95
Cdd:PRK08667   14 LAAAVIPLVFRHKRKRV--WQSVLWLVIAIALLLFAGSLQLFTGNPLDIPL----WGIAPGLDITFHIDRLAAFFIILIG 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  96 FITTLATL-------AAQPVTREYQLFYFLMLAMYSgQIGPFSSRDILLFFIMWEL-ELIPVYLLLAMWGGKKRLYSATK 167
Cdd:PRK08667   88 LVSLCVAIyslgyneHMSSNERANLLSALTALFILS-MLGVVASANTFSFLFFWEImALSSFFLVMNDYQEEETQRAGIF 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 168 FILYTAGGSVFLLMGILGIGLY-GSNEptlnfetLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYST 246
Cdd:PRK08667  167 YFVMTQLSTVFLMLGIIVLFIQtGSFE-------LSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 247 CMLLAGILLKMGAYGLVRINMELFShAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG---- 322
Cdd:PRK08667  240 SALMSGVMLKVAVYGLVRFLMDVLS-PELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGlyvi 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 323 -------SISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:PRK08667  319 fgvygldTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGF 398
                         410
                  ....*....|...
gi 1678641913 396 VAELIVFFGIITS 408
Cdd:PRK08667  399 ASELLLYESFFQS 411
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
117-402 9.83e-21

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 95.04  E-value: 9.83e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 117 FLMLAMysGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGIglYGSNEpTL 196
Cdd:PRK12665  117 YLILVA--GVSNAFLAGDLFNLYVGFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALV--YAATG-TL 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 197 NFETLTN--QSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHaH 274
Cdd:PRK12665  192 NMADLAVrlDELPSGTRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPG-G 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 275 SIFCPwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSY 354
Cdd:PRK12665  271 GLDTL-LMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIE 349
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1678641913 355 DRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVF 402
Cdd:PRK12665  350 RQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALL 397
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-486 2.06e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 93.73  E-value: 2.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  10 IVVVFPIAAGSLIFLFphRGNKVIRWYSICICLIDLLLTTYAFCYHfqlddpliqltenykWINFFDFYWRLGIDGLSIg 89
Cdd:PRK05777   15 LILLGAAVVLLLIDAF--VRRHSRRATLAVLALLLALVALLFVLGA---------------AGGGTAFGGMLVVDGFAL- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  90 piLLTGFITtLATLAAQPVTREYQL------FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKR-L 162
Cdd:PRK05777   77 --FLKGLIL-LASLLALLLARPYLEdrgrgeFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRsL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 163 YSATKFILYTAGGSVFLLMGILGIglYGSNEpTLNFETLTNQ-SYPVALEILLYTAF---LIAFAVKSPIIPLHTWLPDT 238
Cdd:PRK05777  154 EAAIKYFVLGALASGFLLYGMSLL--YGATG-SLSFAGIAKAlADGSGNSLLLLFGLvflLVGLAFKLSAVPFHMWTPDV 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 239 HGEAHYSTCMLLAGILlKMGAYG-LVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFI 317
Cdd:PRK05777  231 YEGAPTPVTAFLATAP-KIAAFAvLLRLLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYL 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 318 ILGIGSISDTGLNGAILQIISHGFIGAALF-FLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILsMASLA-LPGMSGF 395
Cdd:PRK05777  310 LVGLAAGTAEGYSAVLFYLLAYLFMTLGAFgVISLLRRKGGEAESISDFAGLSKRSPLLAAVMTIF-MLSLAgIPPTAGF 388
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 396 VAELIVFFGIITSQkylfmmkilITFVTAIGMILTPI---YLLSILRQMFygykFFNTPNAYFFDSGPRELFISISIL-I 471
Cdd:PRK05777  389 WGKFYVFEAAVEAG---------LWWLAVIGVLNSAIgafYYLRVIKLMY----FDEPPRDAPVNWPLSAGGAVLSVSaL 455
                         490
                  ....*....|....*
gi 1678641913 472 PVIGIGIYPDFIFSF 486
Cdd:PRK05777  456 LVLVLGIFPQPLLDL 470
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
107-404 1.33e-19

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 91.19  E-value: 1.33e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 107 PVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGI 186
Cdd:PRK06525  107 PVHEGTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATL 186
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 187 GLYgsnepTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRIN 266
Cdd:PRK06525  187 FLQ-----TGTFALSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAI 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 267 MELFSHAHSIFcpWLM-ILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG-SI--SDTGLNGAILQIISHGFI 342
Cdd:PRK06525  262 QSMGPIPHVIG--YVGaVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSlAIlgSRLALEGSIAYIFNHAFA 339
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1678641913 343 GAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFG 404
Cdd:PRK06525  340 KSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAA 401
PRK12650 PRK12650
DUF4040 family protein;
115-396 1.88e-19

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 92.03  E-value: 1.88e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 115 FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLySATKFILYTAGGSVFLLMGiLGIGLYGSNEP 194
Cdd:PRK12650  112 FYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSGSGGEA-GSIRTLILTFFGGLTLLAA-VAIAATQTGTT 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 195 TLNfETLTNQSYPVALEILLYTAFLIAFAV--KSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRinmelFSH 272
Cdd:PRK12650  190 SLS-GILHSDVWAEKPGLTTVVAVLIAVAAftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLR-----FSP 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 273 AHSIFCPW---LMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFL 349
Cdd:PRK12650  264 VFHDVAVWnwlLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFML 343
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1678641913 350 AGT------SYDRLRLlyldemGGMAIPMPKIFTIFTI--LSMAslALPGMSGFV 396
Cdd:PRK12650  344 IGVvdhqagTRDIRRL------GSLWRRMPFTFVSVTIaaLSMA--AVPPLFGFV 390
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
68-397 1.06e-18

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 89.18  E-value: 1.06e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  68 NYKWINFFDFYWRLG-IDGLSIGPILLTGFITTLATLAAQPVTREYQLfyflMLAMY--SGQIGPFSSRDILLFFIMWEL 144
Cdd:PRK12668   49 TYLTVTFLGFDLVLGrVDKLSRVFGLIFGIMAFIGVIYALHVKDPGQH----VAALLyvGSALGAVFAGDLLTLFVFWEL 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 145 ELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILgigLYGSNEPTLNFETLTNQSYPVALEILlytaflIAFAV 224
Cdd:PRK12668  125 MAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGIL---LHYAETGSFAFGAIAGLGGTAAWLIL------IGFGV 195
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 225 KSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRinmeLFSHAHsifcpWLMILGSIQIIYAASTSFGQRNLKK 304
Cdd:PRK12668  196 NAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR----AFPGTE-----LLIYIGAAMAVYGVFFALLENDLRR 266
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 305 RIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSM 384
Cdd:PRK12668  267 LLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLFMSAGAVLYRTGTEKLTELGGLYRSMPLTALFCLVGAL 346
                         330
                  ....*....|...
gi 1678641913 385 ASLALPGMSGFVA 397
Cdd:PRK12668  347 SISAFPLFSGFVS 359
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
40-402 1.28e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 85.78  E-value: 1.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  40 ICLIDLLLTTYAFCYHFQLDDPLIQLtENYKWINFFDFYWRLGI--DGLSIGPILLTGFITTLATLAAQPVTRE------ 111
Cdd:MTH00032   34 ICMGSSTLIALFLAYEVLINDAVVHI-ELYKWIESEIFITHIGLlyDTLSVTMLLVISSISTLVHIYSTSYMSDdphvpr 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 112 ----YQLFYFLMLAMysgqigpFSSRDILLFFIMWELELIPVYLLLAMWGGKKRL-YSATKFILYTAGGSVFLLMGI--- 183
Cdd:MTH00032  113 flcyLSLFTFLMMVL-------VTSDNYLQLFIGWEGVGVCSYLLVAFWTTRIQAnKAAIKAIVVNRVGDVGVILGMvli 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 184 -----------LGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAG 252
Cdd:MTH00032  186 yktigsldfltFNGGSVGSGIMDRGYYGGGAYESPLAPFAIIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAA 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 253 ILLKMGAYGLVRiNMELFSHAhSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGsiSDTGLNGA 332
Cdd:MTH00032  266 TMVTAGVFLMIR-SFPLFEKA-PLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIG--IEGSHNVG 341
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1678641913 333 ILQIISHGFIGAALFFLAGTSYDRLRLLYLD--EMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVF 402
Cdd:MTH00032  342 LFHLVNHAFFKALLFLSAGSVIHSTTVDEQDmrKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL 413
PRK12646 PRK12646
DUF4040 family protein;
30-444 4.77e-17

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 84.42  E-value: 4.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  30 NKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATL-AAQPV 108
Cdd:PRK12646   23 RRALAKYAGYIALVAPIISSIYFLIQIPSVAKLQYLSTSIPWMKTLDINLDLRLDGLSLMFSLIISLIGIAVFFyATQYL 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 109 TREY----QLFYFLMLAMYSgQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKK-RLYSATKFILYTAGGSVFLLMGI 183
Cdd:PRK12646  103 SSRKdnlpRFYFYLTLFMFS-MIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGdSQFGAIQSFMITVFGGLALLVGF 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 184 LGIGLYGSNEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLV 263
Cdd:PRK12646  182 IMLYIMTGTNNITEILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLF 261
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 264 RINMELFSHAHSIFCpwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG--------------SISDTGL 329
Cdd:PRK12646  262 RFTPLLGLSNMYIYI--VTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGigggyaqhqqdaiaSIYVFVL 339
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 330 NGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITS- 408
Cdd:PRK12646  340 FAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTg 419
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1678641913 409 --QKYLFMMKILITFVTAIGMILTPIYLLSILRQMFYG 444
Cdd:PRK12646  420 qlSQFSLISMIIIVFIGVIASIFTFTYALYMVKEVFWG 457
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
130-456 1.72e-16

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 81.11  E-value: 1.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 130 FSSRDILLFFIMWELELIPVYLLLAMWGGK-KRLYSATKFILYTAGGSVFLLMGILgiglygsneptLNFETLTNQSYPV 208
Cdd:MTH00094   79 FVSSNMLMLYMFFELSMFPILIMILGYGSQiEKINSSYYLLFYAAFFSFPFLFVYL-----------KNFFFFSLCYFDF 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 209 ALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRInmeLFSHAHSIFCPWlMILGSIQ 288
Cdd:MTH00094  148 FLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRI---LGSLNFVYNNFW-IIFSLLG 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 289 IIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSY--DRLRLLYLdeMG 366
Cdd:MTH00094  224 MILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYhiSKSRLIYF--MN 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 367 GMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILItfvtaigMILTPIYLLSILRQMFYGYK 446
Cdd:MTH00094  302 SFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFY-------FLVSFYYSLFLIVSSFMGKK 374
                         330
                  ....*....|
gi 1678641913 447 FFNTPNAYFF 456
Cdd:MTH00094  375 FSNFNNFNVG 384
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
65-400 2.56e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 81.89  E-value: 2.56e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  65 LTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAQPVTREYQ---LFYFLMLAMYSGQIGPFSSRDILLFFIM 141
Cdd:PRK12647   44 VRGGYAWVPSLGVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPdlgRFYSYILLFMASMLGLVLSDNLITLFVF 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 142 WELELIPVYLLLAMWGGKKRLY-SATKFILYTAGGSVFLLMGILGIG-LYGSNEPT--LNFETLTNQS--YPVALEILLY 215
Cdd:PRK12647  124 WELTSITSFLLIGFNHEREAARrAALQALLVTGGGGLALLAGLILLGnVTGTYSLSelLASGDVIREHplYLAILLLVLG 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 216 TAFliafaVKSPIIPLHTWLPD-----THGEAH-YSTCMLLAGIllkmgaYGLVRINMELFSHAhsifcPWLMIL---GS 286
Cdd:PRK12647  204 GAF-----TKSAQFPFHFWLPNameapTPVSAYlHSATMVKAGI------YLLARLNPVLGGTP-----LWQTILplfGG 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 287 IQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGT------SYDRLRLl 360
Cdd:PRK12647  268 LTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIidhetgTRDITKL- 346
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1678641913 361 yldemGGMAIPMPKIFtIFTILSMASLA-LPGMSGFVA-ELI 400
Cdd:PRK12647  347 -----GGLRRAMPITA-AAALLAALSMAgLPPLFGFLAkELI 382
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
108-446 6.15e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 80.64  E-value: 6.15e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 108 VTREYQLFYFLMLAMysgqIGPFSSRDILLFFIMWELELIPVYLLLAMWGGK-KRLYSATKFILYTAGGSVFLLMGILGI 186
Cdd:PRK12649  110 LPRYYQYLLLFMGSM----IGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRpESVYGATKSLLITAGGGLFMFAGFLLL 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 187 ----GLYGSNEPTLNFETLTN-QSYPVALEILLYtaFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYG 261
Cdd:PRK12649  186 hvitGTYDIATILQDSELIENiKGHPLFLITLIL--IFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYL 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 262 LVRInmelfshaHSIFC---PWLMIL---GSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSIS----DTGLNG 331
Cdd:PRK12649  264 VARI--------HPIFSgteAWFILVsgtGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTyhepGLGVAA 335
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 332 AILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKY 411
Cdd:PRK12649  336 ATFHLLNHATFKACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYETSVEMGAL 415
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1678641913 412 L-FMMKILITFVTAIGMILTPIYLLSILRQMFYGYK 446
Cdd:PRK12649  416 IgGPFTIIIPAVAVLGGVFTFAYSIKLIDGIFLGER 451
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
115-484 2.37e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 2.37e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 115 FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKR-LYSATKFILYTAGGSVFLLMGILGIglYGSNE 193
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISLI--YGFTG 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 194 pTLNFETLTNQSYPVALEILLYTA----FLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMEL 269
Cdd:TIGR01770 182 -SLNFEDLLLFLSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYI 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 270 FSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALF-- 347
Cdd:TIGR01770 261 LFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFgv 340
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 348 FLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFmmkiliTFVTAIGM 427
Cdd:TIGR01770 341 LSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWL------AVIAVLTS 414
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1678641913 428 ILTPIYLLSILRQMfygykFFNTPNAYFFDSGPR--ELFISISILIPVIGIGIYPDFIF 484
Cdd:TIGR01770 415 VIGAFYYLRVVKVM-----YFDKPERRIPSNPQSkaQSLLLSISALFILFLGLFPSLIL 468
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
195-451 2.74e-15

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 78.33  E-value: 2.74e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 195 TLNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINmeLFSHAH 274
Cdd:PRK08042  163 TLDLRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLS--LLGGNA 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 275 SIFCP-WLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGS-----------ISDTGLNGAILQIISHGFI 342
Cdd:PRK08042  241 PLWWGvALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAgvtgialeqpaLIALGLVGGLYHLLNHSLF 320
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 343 GAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIV---FFGIitSQKYLFMMKILI 419
Cdd:PRK08042  321 KSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIyqsFFKL--SNSGAFVARLLG 398
                         250       260       270
                  ....*....|....*....|....*....|..
gi 1678641913 420 TFVtAIGMILTPIYLLSILRQMfYGYKFFNTP 451
Cdd:PRK08042  399 PLL-AVGLAITGALAVMCMAKV-YGVTFLGAP 428
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
8-444 2.52e-14

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 75.40  E-value: 2.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAaGSLIFLFPHR--GNKVIRWYSICICLIDLLLTTYAFCyHFQLDDPLIQLTEN-YKWINF--FDFYWRLG 82
Cdd:TIGR01974   3 IFLIVFLPLI-GFLIAGLFGRriGERVSGIIGIGSVGLSAALSAFVFV-DFFLNGEGEAFTQSlFPWISVggFQVDFGLR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  83 IDGLSIGPILLTGFITTLATL------AAQPVTREY----QLFYFLMLAMysgqigpFSSRDILLFFIMWELELIPVYLL 152
Cdd:TIGR01974  81 LDGLSLTMLVVVTGVGSLVHIysigymAHDEGYSRFfaylNLFTFSMLML-------VLADNFLQLFFGWEGVGLCSYLL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 153 LAMWGGK-KRLYSATKFILYTAGGSVFLLMGILGIGLYGSnepTLNFETLTNQSYPVALEILLYTAFLIAFAV--KSPII 229
Cdd:TIGR01974 154 IGFWYKKpSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFG---TLNFQEVFALAPGAFFSALTLICLLLFIGAmgKSAQL 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 230 PLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRINmELFSHAHSIFCpWLMILGSIQIIYAASTSFGQRNL 302
Cdd:TIGR01974 231 PLHTWLPDamegpTPVSAliHAAT-MVTAGVYL------VARTS-PLFELSPTALY-LVTIIGAITALFAATVALVQNDI 301
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 303 KKRIAYSSVSHMG--FIILGIGsisdtGLNGAILQIISHGFIGAALFFLAGT----SYDRLRLLYldeMGGMAIPMPKIF 376
Cdd:TIGR01974 302 KRILAYSTMSQLGymFLALGVG-----AYAAAIFHLMTHAFFKALLFLGAGSvihaMHHEQDIRK---MGGLRKKMPVTY 373
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1678641913 377 TIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILItfvtaIGMILTPIYLLSILRQMFYG 444
Cdd:TIGR01974 374 ITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGL-----IGAFLTAFYSFRLIFMVFHG 436
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
114-402 3.86e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 74.50  E-value: 3.86e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 114 LFYFLMLamysGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGiLGIgLYGSNE 193
Cdd:PRK12666  114 LFQFQLM----GLNGAFLTGDLFNLFVFFEVLLAASYGLLLHGSGRARVRAGLHYVAINLVASSLFLIG-VGL-IYGVTG 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 194 pTLNFETLTN--QSYPVALEILLYTA---FLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAgILLKMGAYGLVRINME 268
Cdd:PRK12666  188 -TLNMADLAQriAQLPAADRALLEAGaalLLVVFLIKAAMWPLNFWLPPAYAAASAPVAALFA-IMTKVGIYAILRLSTL 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 269 LFSHA----HSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGA 344
Cdd:PRK12666  266 LFGPEagasAGFGQDWLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAA 345
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1678641913 345 ALFFLA-------GTSYDRL---RLLYLDEMG-----GMAIPMPKIF--TIFTILSMASLALPGMSGFVAELIVF 402
Cdd:PRK12666  346 ALFLLAdlverqrGAAADRLavtPELYDLDEEeeeevGVAIPATMALlgLLFFICALALAGLPPLSGFLGKFALL 420
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
132-433 4.22e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 68.80  E-value: 4.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 132 SRDILLFFIMWELELIPVYLLLAMWGGKKR-LYSATKFILYTAGGSVFLLMGILGIGLYGSnepTLNFETLTNQSYPVAL 210
Cdd:PRK12644  125 SDNLLLLYVFWELTTVLSFLLIGHYAERAAsRRAALQALLVTTAGGLAMLVGIIILGQAAG---TYRLSELLADPPTGPA 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 211 EILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRinmelFSHAHSIFCPW---LMILGSI 287
Cdd:PRK12644  202 VSVAVVLILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVAR-----LAPGFADVPVWrptVLVLGLA 276
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 288 QIIYAASTSFGQRNLKKRIAYSSVSHMGFIIL--GIGSiSDTGLNGAILqIISHGFIGAALFFL-------AGTSyDrlr 358
Cdd:PRK12644  277 TMLLGGWRALRQHDLKLILAYGTVSQLGFLTVlvGIGT-RDAALAGLAM-LLAHALFKAALFLVvgiidhsTGTR-D--- 350
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1678641913 359 llyLDEMGGMAIPMPKIFtIFTILSMASLA-LPGMSGFVAELIVFFGIITSQkYLFMMKILITFVTAIGMILTPIY 433
Cdd:PRK12644  351 ---IRKLSGLGRRQPVLA-VVAALAAASMAgLPPLLGFVAKEAALEAVLHDG-ALGPAGPVVLAGIVLGSILTVAY 421
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
65-483 3.74e-11

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 65.72  E-value: 3.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  65 LTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLaaqpvtreYQLFY-------------FLMLAMySGQIGPFS 131
Cdd:PRK12645   58 VMKTLPWIPSLGINFTLYVDGLSLLFALLITGIGSLVVL--------YSIYYlskkkeqlgnfyvYLLLFM-GAMLGVVL 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 132 SRDILLFFIMWELELIPVYLLLAMWGGKKR-LYSATKFILYTAGGSVFLLMGILGIGLYGSN----EPTLNFETLTNQSY 206
Cdd:PRK12645  129 SDNLIVLYLFWELTSISSFLLISYWYEREAsRYGAQKSMLITVFGGLSMLGGFILLYIMTGSfsirEMIANADEIQNSPL 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 207 PVALEILlytaFLIAFAVKSPIIPLHTWLPD-----THGEAH-YSTCMLLAGILLKMGAYGLVRINMELFshahsifcpW 280
Cdd:PRK12645  209 FIPAMIL----ILLGAFTKSAQFPFYIWLPDameapTPVSAYlHSATMVKAGIYLVARFTPIFAGSQVWF---------W 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 281 L-MILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFII--LGIGSIS-----------DTGLNGAILQIISHGFIGAAL 346
Cdd:PRK12645  276 TvTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMslLGIGAASlhyqgddskiyAAAITAAIFHLINHATFKGSL 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 347 FFLAG-----TSYDRLRLLyldemGGMAIPMPKIFTIFTI--LSMAslALPGMSGFVAELIVFFGIITSQKYLFM----M 415
Cdd:PRK12645  356 FMIVGivdheTGTRDIRKL-----GGLMTIMPITFTIALIgaLSMA--GLPPFNGFLSKEMFFESMLNATEANLFsldtW 428
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 416 KILITFVTAIGMILTPIYLLSILRQMFYG-YKFFNTPNAYffDSGPRELFISISIL-IPVIGIGIYPDFI 483
Cdd:PRK12645  429 GVLFPVIAWVASVFTFVYSIIFIFKTFFGkYKPEQLPKKA--HEAPIGMLISPIILaSLVVVFGLFPNIL 496
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
131-351 4.99e-11

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 64.99  E-value: 4.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 131 SSRDILLFFIMWELELIPVYLLLAMWGGKKRL-YSATKFILYTAGGSVFLLMgILGIGLYGSNEPTLNFETLTNQSYPVA 209
Cdd:MTH00208  156 SSNNLFLLFIGWEGVGFLSFLLISWWTTRNDAnSSALQAVIYNRIGDIGIIL-FLSLSLINFNSWNLNEILSLNNSNSFL 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 210 LEILLYTAfLIAFAVKSPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRINmELFSHaHSIFCPWLM 282
Cdd:MTH00208  235 INILLFGI-LLAAAGKSAQFGLHPWLPAamegpTPVSAllHSST-MVVAGVFL------LIRTS-PLISN-SPWFLSLCL 304
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1678641913 283 ILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIgsisdtGLNG---AILQIISHGFIGAALFFLAG 351
Cdd:MTH00208  305 ILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAI------GLNQpnlALFHICTHAFFKAMLFLCSG 370
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
114-395 5.91e-11

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 64.71  E-value: 5.91e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 114 LFYFLMLAMysgqigpFSSRDILLFFIMWELELIPVYLLLAMWGGKKRL-YSATKFILYTAGGSVFLLMGILGI-GLYGS 191
Cdd:MTH00020  119 LFTFLMVVL-------VTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEAnKAAIKAMLVNRVGDIGLLLAMFLLwDRFGS 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 192 neptLNFETLTNQSYPVALEILLYTAFLIAFAV--KSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINmEL 269
Cdd:MTH00020  192 ----LDFSSVFNMVVSAPSSDITLICLFLFIGAvgKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSS-PL 266
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 270 FSHAHSIFCPwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG-SISDTGLngaiLQIISHGFIGAALFF 348
Cdd:MTH00020  267 FEQAPLALII-VTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGlSHYSISL----FHLMNHAFFKALLFL 341
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1678641913 349 LAGTSYDRLrllyLDE-----MGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:MTH00020  342 SAGSVIHAL----SDEqdmrkMGGLISFLPLTYIFFLIGSLSLMGFPYLTGF 389
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
114-395 1.53e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 60.41  E-value: 1.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 114 LFYFLMLAMysgqigpFSSRDILLFFIMWELELIPVYLLLAMWGGK-KRLYSATKFILYTAGGSVFLLMGILGI-GLYGS 191
Cdd:MTH00210  119 LFTFLMIVL-------VTSDNYVQLFIGWEGVGLCSYLLINFWLTRiKANKAAIKAMLINRVGDIGLVLAMIMIlKEFGT 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 192 NEPTLNFETLTNQSYPVALEILLYTAFLIAFAvKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRiNMELFS 271
Cdd:MTH00210  192 LEFSTISSLLVTNINKESLTIICLLLFIGAVG-KSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIR-SGPLFE 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 272 HAhSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSisdTGLNGAILQIISHGFIGAALFFLAG 351
Cdd:MTH00210  270 GS-PLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGI---SNYSTSLFHLMNHAFFKALLFLSAG 345
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1678641913 352 TSYDRLRllylDE-----MGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:MTH00210  346 SVIHAVS----DEqdmrkMGGLIKSIPFTYVMILIGSLSLMGFPYLTGF 390
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
1-395 9.66e-09

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 57.86  E-value: 9.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   1 MTNYfpwLTIVVVFPIAAGSLIFLFPHR-GNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPLIQLTeNYKWINF--FDF 77
Cdd:PRK06590    1 MMNL---LWLIVLLPLIGALILGLFGRRiGEKWAHLVGTGLVGLSALLSLVVFFDFLLGGGRAFSQT-LWTWISVgdFDV 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  78 YWRLGIDGLSIgpiLLTGFITTLATL---------AAQPVTREY----QLFYF--LMLAMysgqigpfsSRDILLFFIMW 142
Cdd:PRK06590   77 DFGLRVDGLSA---TMLVVVTGVSFLvhiysigymAHDEGYRRFfaylNLFTFsmLMLVL---------SDNLLQLFFGW 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 143 ELELIPVYLLLAMWGGKKRLYSATK--FILyTAGGSVFLLMGILGIGLY-GSneptLNFETLTNQSYPVALE---ILLYT 216
Cdd:PRK06590  145 EGVGLCSYLLIGFWYKKPSAGAAAMkaFIV-NRVGDVGLALGIFLLFAEfGS----LNYDEVFAAAPQFFGLgwsALTLI 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 217 AFL--IAFAVKSPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRINmELFSHAHSIFCpWLMILGSI 287
Cdd:PRK06590  220 CLLlfIGAMGKSAQFPLHTWLPDamegpTPVSAliHAAT-MVTAGVYL------VARMS-PLFELSPEALL-FVAIVGAV 290
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 288 QIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSIsdtGLNGAILQIISHGFIGAALFFLAG-----TSYDrlrllyL 362
Cdd:PRK06590  291 TALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVG---AYAAAIFHLMTHAFFKALLFLGAGsvihaMHHE------Q 361
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1678641913 363 D--EMGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:PRK06590  362 DirKMGGLRKKMPVTYATFLIGTLALIGIPPFAGF 396
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
8-444 2.32e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 56.74  E-value: 2.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913   8 LTIVVVFPIAAGSLIFLFPHRGNKVIRWYSICICLIDLLLTtyAFCYHFQLDDPLIQLTenYKWINFFDFYWRLGIDGLS 87
Cdd:PRK12648    3 LLLLVLLPFLGALLAALLPRNARNAEAWLAGLVALAALVLL--ALLYPAVAAGEVIRAE--IEWLPALGLNLSLRLDGLA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  88 IgpiLLTGFITTLATL----------AAQPVTREYQLFYFLMLAMysgqIGPFSSRDILLFFIMWELELIPVYLLLAMWG 157
Cdd:PRK12648   79 W---LFALLILGIGLLvvlyaryylsPADPVPRFFSFLLLFMGAM----LGIVLSGNLILLVVFWELTSLSSFLLIGYWH 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 158 GKK--RLYSATKFILyTAGGSVFLLMGILGIG-LYGSNEPT--LNFETLTNQS--YPVALEILLYTAFliafaVKSPIIP 230
Cdd:PRK12648  152 HRAdaRRGARMALTV-TGAGGLALLAGVLLLGhIVGSYDLDvvLAAGDLIRAHplYPPALVLILLGAF-----TKSAQFP 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 231 LHTWLPdtHGEA---------HYSTcMLLAGILLkmgaygLVRinmelFSHAHSIFCPWLMILGS---IQIIYAASTSFG 298
Cdd:PRK12648  226 FHFWLP--HAMAaptpvsaylHSAT-MVKAGVFL------LAR-----LWPVLAGTEEWFWIVGGaglITLLLGAYFALF 291
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 299 QRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAG-----TSYDRLRLLyldemGGMAIPMP 373
Cdd:PRK12648  292 QHDLKGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHIINHATFKASLFMAAGiidheTGTRDMRRL-----SGLRRLMP 366
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1678641913 374 KIFTIFTILSMASLALPGMSGFVA-ELivFFGIITSQKYLFMMKILITFVTAIGMILTPIYLLSILRQMFYG 444
Cdd:PRK12648  367 ITATLAMVAAAAMAGVPLLNGFLSkEM--FFAETLDTHLLGSLDWLLPVAATLAGAFSVAYSLRFIHDVFFG 436
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
131-450 4.02e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 55.73  E-value: 4.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 131 SSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSAT-KFILYTAGGSVFLLMGIlGIGLYGSNEPTLNFETLTNQSypva 209
Cdd:MTH00211  128 SANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAAlQAVIYNRIGDIGLLLSM-VWLLLNLNSWEISQLFILNLD---- 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 210 lEILLYTAFLIAFAVKSPIIPLHTWLPDTHgEA--------HYSTcMLLAGILLKMGAYGLVRINMELFShahsifcpWL 281
Cdd:MTH00211  203 -LTLFLLGLLLAAMGKSAQFGFHPWLPSAM-EGptpvsallHSST-MVVAGVFLLIRLSPLFQNNQLILG--------AV 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 282 MILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIgsisdtGLNG---AILQIISHGFIGAALFFLAGTS-YDRL 357
Cdd:MTH00211  272 LLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTL------GLNQpqlAFLHICTHAFFKAMLFMCSGSIiHGLN 345
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 358 RLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMkilitFVTAIGMILTPIYLLSI 437
Cdd:MTH00211  346 NEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWAL-----LLTLLATSLTAAYSFRL 420
                         330
                  ....*....|...
gi 1678641913 438 LRQMFYGYKFFNT 450
Cdd:MTH00211  421 IFLSLGGYPRFLS 433
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
116-395 4.47e-08

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 55.80  E-value: 4.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 116 YFLMLAMYSGQ-IGPFSSRDILLFFIMWELELIPVYLLLAMWGGKK-RLYSATKFILYTAGGSVFLLMGILGI----GLY 189
Cdd:PRK07376  124 FFAYLSLFSSSmLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKgAADAAQKAFVVNRVGDFGLLLGILGLfwatGSF 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 190 GSNEPTLNFETLTNQ-SYPVALEILLYTAFLIAFAVKSPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLKMGAYg 261
Cdd:PRK07376  204 DFDGIADRLSELVSSgAVSGWLALLLCILVFLGPMAKSAQFPLHVWLPDamegpTPISAliHAAT-MVAAGVFLVARMY- 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 262 lvrinmELFSHAhsifcPWLM----ILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSisdtGLNGA-ILQI 336
Cdd:PRK07376  282 ------PVFEQF-----PAVMtviaWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGC----GAYSAgLFHL 346
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1678641913 337 ISHGFIGAALFFLAGT---------------SYDrLRLlyldeMGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:PRK07376  347 MTHAYFKAMLFLGSGSvihgmeevvghdpvlAQD-MRL-----MGGLRKYMPITAITFLIGCLAISGIPPFAGF 414
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
136-395 5.47e-08

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 55.17  E-value: 5.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 136 LLFFIMWELELIPVYLLLAMWGGkkRLY---SATKFILYTAGGSVFLlmgILGIGLYGSNEPTLNF-ETLTNQSYPvale 211
Cdd:MTH00004  138 FQLFIGWEGVGIMSFLLIGWWSG--RAEantAALQAIIYNRIGDIGL---ILSMAWLAMTLNTWEIqQLFSPTQTP---- 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 212 ILLYTAFLIAFAVKSPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRIN--MELFSHAHSIfCpwlM 282
Cdd:MTH00004  209 TLPLLGLILAATGKSAQFGLHPWLPAamegpTPVSAllHSST-MVVAGIFL------LIRTHplLQNNQTALTI-C---L 277
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 283 ILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIgsisdtGLNG---AILQIISHGFIGAALFFLAGTSYDRLRl 359
Cdd:MTH00004  278 CLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTI------GLNQpqlAFLHISTHAFFKAMLFLCSGSIIHNLN- 350
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1678641913 360 lylDE-----MGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:MTH00004  351 ---NEqdirkMGGLQKTLPITSSCLTIGNLALMGTPFLSGF 388
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
117-486 1.30e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 53.43  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 117 FLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATK-FILYTAGGSVFLLMGILgiglygsnept 195
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKyFIIQATASALLLFGGLL----------- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 196 lNFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAhs 275
Cdd:MTH00200   77 -NAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNI-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 276 ifcpwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYD 355
Cdd:MTH00200  154 -----LLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKIN 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 356 RLRllyldeMGGMAIPMPKIFTIFTILSMAslALPGMSGFvaelivFFGIITSQkylFMMKILITFVTAIGMILTPIYLL 435
Cdd:MTH00200  229 SLS------SSKTKNPILSMLLGLTLLSLG--GLPPLTGF------FPKWLILQ---ELSKQGLFIYATILLLGSLLSLF 291
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1678641913 436 SILRqMFYGYKFFNTPNAYFFDSGPRE-----LFISISILIPVIGIGIYPDFIFSF 486
Cdd:MTH00200  292 FYLR-LSYLTLLTLSPNQINMMSSWRTksnsnLLVGLLLLLSILGLPLTPQLLFLF 346
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
96-423 1.45e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 53.97  E-value: 1.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  96 FITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFilytagG 175
Cdd:PRK12664   46 FSLALIFLYILPIKNMRFSEMLCYLLYYISSIAAISSSSLTLVVIGFEFMALSALMIIAAGCPGGNIGAFIHY------A 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 176 SVFLLMG-ILGIGLYGSNeptlnfetlTNQSYPVALEILLYTAFLIAFAVkspiIPLHTWLPDTHGEAHYSTCMLLAGIL 254
Cdd:PRK12664  120 CVHFFSGvLLLVGASGQA---------QNGQYTGYCKLLFMLGLLINCAC----FPASSWVVDAYPAASNFGIIVLSLFT 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 255 LKMGAYGLVRinmeLFSHAhsifcPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIG--SISDTGLNGA 332
Cdd:PRK12664  187 TKVAALVLLL----FFSGE-----EILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGfsGSSGVAIGIL 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 333 ILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGM-AIPMPKIFTIFTILSMAslALPGMSGFVAELIVFFGIITSQ-- 409
Cdd:PRK12664  258 ILQIVLSVVYQTLLFMVADSVINRTRKFNLNRVGGLfKMSLEAMCCIIAILNMG--AFPGTAGFVSKSLITHSIDTAGlt 335
                         330
                  ....*....|....*...
gi 1678641913 410 ----KYLFMMKILITFVT 423
Cdd:PRK12664  336 lvlyKKLFLICSLLLFAS 353
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
175-428 3.43e-07

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 52.99  E-value: 3.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 175 GSVFLLMGILGIGLYGsnePTLNFETLTNQSYPVALEILlyTAFLIAFAV------KSPIIPLHTWLpDTHGEAHYSTCM 248
Cdd:PRK07390  183 GDLLLLMGVVALSPLA---GTLNFSDLAAWAATANLDPL--TATLLGLALiagptgKCAQFPLHLWL-DEAMEGPNPASI 256
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 249 LLAGILLKMGAYGLVRInMELFSHAhSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGsisdTG 328
Cdd:PRK07390  257 LRNSVVVATGAWVLIKL-QPVLALS-PVALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVG----LQ 330
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 329 LNGAILQII-SHGFIGAALFFLAGT------SYDrlrllyLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIV 401
Cdd:PRK07390  331 QPDIALLLLlTHAIAKALLFMSVGSiilttiTQD------LTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRL 404
                         250       260
                  ....*....|....*....|....*..
gi 1678641913 402 FFGIITSQKYLFMMKILITFVTAIGMI 428
Cdd:PRK07390  405 ADGLWAVSPWLVGVLLLVNALTAFNLT 431
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
117-429 1.55e-06

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 50.31  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 117 FLMLAMYSGqIGPFSSRDILLFFIMWELELIP-VYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGIGLygsNEPT 195
Cdd:MTH00062   76 FLFLSLIFS-ILCFCVNNSLLFWFFYELSIIPlLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSL---VNGS 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 196 LNFetlTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHS 275
Cdd:MTH00062  152 FNF---SDWGSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFL 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 276 IFCPWLMILGSIQIIYAASTSFGQRNLkkriAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYD 355
Cdd:MTH00062  229 GYLFLCCLFSVFFLITACSELDGKRWL----AFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYE 304
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1678641913 356 ----RLRLLYLDEMGGMAIPMpkIFTIFTILSMASlaLPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTAIGMIL 429
Cdd:MTH00062  305 vsgsRNWVLLKSGINGSLVLR--VIVVFSFLSLCS--FPPTIQFFCEVFLVSSSFGVLVYLLFWCFYLFFGGLVPLIL 378
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
131-448 1.69e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 50.03  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 131 SSRDILLFFIMWELELIPVYLLLAMWGGKkrLYSATK----FILYTAGGSVFLLMGILGIGLYGSNE-PTLNFETLTNQS 205
Cdd:MTH00196   11 SSSNWLSVYLAIELQTLSLFILIAQNRGS--GYSAEAglkyFVLGALSSGLFLFGCALLCGTTGGLHlSYINLVLNSGQS 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 206 YPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAgILLKMGAYG-LVRINMELfshahsifcPWLMIL 284
Cdd:MTH00196   89 FSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLGIFSiLVSIGLNV---------NILLIG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 285 GSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDE 364
Cdd:MTH00196  159 GLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 365 MGGMAIPMPKIFTIFTILSMAslALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTAIGmiltpiYLLSILRQMFYG 444
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIA--GIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGV------YYVRIVKILFFQ 310

                  ....
gi 1678641913 445 YKFF 448
Cdd:MTH00196  311 ANSF 314
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
115-452 2.73e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 49.11  E-value: 2.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 115 FYFLMLaMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGiglygsnep 194
Cdd:MTH00144    7 LLFLFL-MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLI--------- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 195 tlnfetltnqSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGI--LLKMGAYGLVRINMELFSH 272
Cdd:MTH00144   77 ----------MYNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWqkVAPLFLLSNFLDLYWLAYL 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 273 ahsifcpwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIgaaLFFLAGT 352
Cdd:MTH00144  147 --------LCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFL---FFSLWSG 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 353 SYDRLRLLYldemGGMAIPMPKIFTIFTILSMAslALPGMSGFVAELIVFFGiitsqkYLFMMKILITFVTAIGMILTPI 432
Cdd:MTH00144  216 DSGSMKDLG----SLKPSYKTGLSIISLLLSLG--GLPPFLGFCSKLLVLIS------SMESSPLLLILLLLLGSLISLF 283
                         330       340
                  ....*....|....*....|.
gi 1678641913 433 YLLSILRQMF-YGYKFFNTPN 452
Cdd:MTH00144  284 FYLSVFFSSFlSSSKSKKSNS 304
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
211-395 4.39e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 49.14  E-value: 4.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 211 EILLYTAFLIAFAVKSPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRINmELFSHAHSIfcpwLMI 283
Cdd:MTH00066  206 STLPLLGLILAAAGKSAQFGLHPWLPAamegpTPVSAllHSST-MVVAGIFL------LIRFH-PLLENNQTA----LTI 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 284 ---LGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIgsisdtGLNG---AILQIISHGFIGAALFFLAGTSYDRL 357
Cdd:MTH00066  274 clcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTI------GLNQpqlAFFHICTHAFFKAMLFLCSGSIIHSL 347
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1678641913 358 RllylDE-----MGGMAIPMPKIFTIFTILSMASLALPGMSGF 395
Cdd:MTH00066  348 N----DEqdirkMGGLQKALPITTSCLTIGSLALTGTPFLAGF 386
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
217-433 1.06e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 47.84  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 217 AFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMelFSHAHSIFCPWLMILGSIQIIYAASTS 296
Cdd:MTH00207  184 SIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYP--FLSSTYWFNPALLLTASLTMLMAGLSA 261
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 297 FGQRNLKKRIAYSSVSHMGFII--LGIGSIsdtglNGAILQIISHGFIGAALFFLAGTS-YDRLRLLYLDEMGGMAIPMP 373
Cdd:MTH00207  262 MTECDMKKIIALSTLSQLGVMMasLGLGMP-----KLALFHLITHALFKALLFVCAGSLiHSHHHSQDLRTMGNLTNQMP 336
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1678641913 374 KIFTIFTILSMASLALPGMSGF-----VAELIVFFGIITSQKYLFMMKILITFVTAIGMILTPIY 433
Cdd:MTH00207  337 LTTSCLLIANLALCGSPFLSGFyskdlILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLW 401
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
132-323 1.35e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 47.86  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 132 SRDILLFFIMWELELIPVYLLLAMWGGKKRlysatKFILYTAGGSVFLLMGILGIGLYGSNEPTLNFETLTNQSYpvale 211
Cdd:PRK06459   91 SDNYLLFLAGWEIMTIPSYVAIALTKKNKR-----PAFVFMAFGELSTVLILAGFAWAFIISGTTNFSYLPSPVP----- 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 212 iLLYTAFliAFAVKSPIIPLH--TWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQI 289
Cdd:PRK06459  161 -LILASF--GFIIKMGMMPFLvsEWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIGYFGLTILAIGAFSI 237
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1678641913 290 IYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGS 323
Cdd:PRK06459  238 LFGALYAYVSENVKGLLAFSTIENNGAILVALGL 271
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
220-424 1.35e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 47.32  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 220 IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAgILLKMGAYG-LVRINMELfshahsifcPWLMILGSIQIIYAASTSFG 298
Cdd:MTH00199  198 ISLLFKLSAAPFHMWAPDVYEGAPTITTALLA-TVPKIGVFSiLVQIGPVT---------NVVLICAVLSIIYGAIGALN 267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 299 QRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSydRLRLLYLDEMGGMAIPMPKIFTI 378
Cdd:MTH00199  268 QTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVIMSICSFSIILSL--KLTKGLIVEVSGLSRKNPVIALT 345
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1678641913 379 FTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITFVTA 424
Cdd:MTH00199  346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIA 391
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
116-437 2.16e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 46.59  E-value: 2.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 116 YFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGIglygsnept 195
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS--------- 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 196 lnfetltnqSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAgILLKMGAYGLVRINMELFShahs 275
Cdd:MTH00197   72 ---------FSNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLA-TWQKLAPLLILAFNSSSFM---- 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 276 ifcpWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIlgigSISDTGLNGAILQIISHGFIGAALFFLagTSYD 355
Cdd:MTH00197  138 ----GLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWML----MSLVYSPSIFMLYYLIYFVIMFMLFLF--LSKN 207
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 356 RLRLLYLDEMGGMAIPMPKIFTIFTILSMAslALPGMSGFVAELIVFFGIITSQKYlfmmkiLITFVTAIGMILTPIYLL 435
Cdd:MTH00197  208 NLSSLNQQYSNPESMSSNLVFLGLSFLSLG--GLPPLSGFFLKWLILTSLLSSNIS------LITFMLILSTCFSLYYYL 279

                  ..
gi 1678641913 436 SI 437
Cdd:MTH00197  280 SL 281
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
91-400 2.68e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.56  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913  91 ILLTGFITTLATLAAQPVTREYQLFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFIL 170
Cdd:PRK06277   78 IFVLSLIASLVLITGLGEKKSSGLYVFLMLMGLASVSAIVLADDIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMI 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 171 YTAGGSVFLLMGI-LGIGLYGS-NEPTLNFETLTNQSYPVALEILLYTAFLIAFAVKSPiiPLHTWLPDTHGEAH-YSTC 247
Cdd:PRK06277  158 LGNVAGSILLLGIgFLLASTGTlNITDIHNALLVNPTSPVIYGGLLLLIFGLLYGSGLP--PFHTIKSDIYAKAKpFGSA 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 248 MLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGSISDT 327
Cdd:PRK06277  236 LLQTFSKFVLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPL 315
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1678641913 328 GLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELI 400
Cdd:PRK06277  316 GIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLM 388
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
219-395 1.17e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 44.84  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 219 LIAFAVKSPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRIN--MELFSHAHSIfcpwLMILGSIQI 289
Cdd:MTH00108  217 LLAATGKSAQFGLHPWLPSamegpTPVSAllHSST-MVVAGVFL------LIRFHplMENNKTIQTL----TLCLGAITT 285
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 290 IYAASTSFGQRNLKKRIAYSSVSHMGFIILGIGsISDTGLngAILQIISHGFIGAALFFLAGTSYDRLRllylDE----- 364
Cdd:MTH00108  286 LFTAICALTQNDIKKIVAFSTSSQLGLMMVTIG-INQPHL--AFLHICTHAFFKAMLFMCSGSIIHNLN----DEqdirk 358
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1678641913 365 MGGMAIPMPkiFTIfTILSMASLALPGM---SGF 395
Cdd:MTH00108  359 MGGLFKTLP--FTS-TALIIGSLALTGMpflTGF 389
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
114-319 1.27e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 44.39  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 114 LFYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLmgiLGIGLYGSNE 193
Cdd:PRK06591  116 LFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLIL---IAIGFLLSIT 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 194 PTLNFETLTN---QSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVR-----I 265
Cdd:PRK06591  193 GSLNMTDIAAylqEHTNSRIITIAIGFFLIGAILKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKftyiiI 272
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1678641913 266 NMELFSHAHSIFCPWLMILGsiqIIYAASTSFGQRNLKKRIAYSSVSHMGFIIL 319
Cdd:PRK06591  273 GYETIKTAITNFIRPIALAT---LIIAPYFAYQAKNFKNIIIYSCFTQIGYVFL 323
ndhF CHL00025
NADH dehydrogenase subunit 5
179-351 2.71e-04

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 43.73  E-value: 2.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 179 LLMGILGigLY---GSNEPTLNFETLTN--QSYPVALEILLYTAFLI-AFAV-KSPIIPLHTWLPD-----THGEA--HY 244
Cdd:CHL00025  189 LLLGILG--FYwitGSFEFRDLFEIFNNliYNNEVNLLFATLCAFLLfLGPVaKSAQFPLHVWLPDamegpTPISAliHA 266
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 245 STcMLLAGILLkmgaygLVRInMELFshahsIFCPWLMIL----GSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIL- 319
Cdd:CHL00025  267 AT-MVAAGIFL------VARL-LPLF-----IVIPYIMNLisliGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLa 333
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1678641913 320 -GIGSISdtglnGAILQIISHGFIGAALFFLAG 351
Cdd:CHL00025  334 lGIGSYR-----AALFHLITHAYSKALLFLGSG 361
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
115-425 3.14e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 43.12  E-value: 3.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 115 FYFLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLllaMWGGKKR----LYSATKFILYTAGGSVFLLMGI-LGIGLY 189
Cdd:PRK02504  112 FAAILLTATLGGMFLSGATELVMIFISLETLSIASYL---LTGYMKRdprsNEAALKYLLIGAASSAIFLYGSsLLYGLS 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 190 G--SNEPTLNFETLTNQSYPVALEILlytaFLIA-FAVKSPIIPLHTWLPD------THGEAHYSTCMLLAG----ILLK 256
Cdd:PRK02504  189 GgsTQLSAIALALITSPSLGLALALV----FVIAgIAFKISAVPFHQWTPDvyegspTPVVAFLSVGSKAAGfalaIRLL 264
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 257 MGAYGLVRINMELFSHAHSIFCpwlMILGSIQIIyaASTSfgqrnLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQI 336
Cdd:PRK02504  265 VTAFPSFDEQWKLLFTALAILS---MVLGNVVAL--AQTS-----MKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYL 334
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 337 ISH------GFIGAALFFLAgTSYDRlrllyLDEMGGMAIPMPKIfTIFTILSMASLA-LPGMSGFVAELIVFFGIITSQ 409
Cdd:PRK02504  335 LAYlfmnlgAFACVILFSLR-TGTDQ-----ISDYAGLYQKDPLL-TLGLSLCLLSLGgIPPLAGFFGKIYLFWAGWQAG 407
                         330
                  ....*....|....*.
gi 1678641913 410 KYLFMMKILITFVTAI 425
Cdd:PRK02504  408 LYLLVLVGLVTSVISI 423
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
231-395 1.24e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 41.36  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 231 LHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLVRIN--MELFSHAHSIfCPWLmilGSIQIIYAASTSFGQRN 301
Cdd:MTH00137  234 LHPWLPSamegpTPVSAllHSST-MVVAGIFL------LIRLSplMENNQTALTT-CLCL---GALTTLFTATCALTQND 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 302 LKKRIAYSSVSHMGFIILGIGsisdtgLNG---AILQIISHGFIGAALFFLAGTSYDRLRllylDE-----MGGMAIPMP 373
Cdd:MTH00137  303 IKKIVAFSTSSQLGLMMVTIG------LNQpqlAFLHICTHAFFKAMLFLCSGSIIHSLN----DEqdirkMGGLHHLTP 372
                         170       180
                  ....*....|....*....|....*
gi 1678641913 374 KIFTIFTIlsmASLALPGM---SGF 395
Cdd:MTH00137  373 FTSSCLTI---GSLALTGTpflAGF 394
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
150-395 1.51e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 41.17  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 150 YLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILGIGLYGSneptLNFETLtnqSYPVALEILLYTAFLIAFAVKSPII 229
Cdd:MTH00209  120 YLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGN----WNIFYL---NFNSNLGSVISVLIVLAAMTKSAQI 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 230 PLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHahSIFCPWLMILGSIQIIYAASTSFGQRNLKKRIAYS 309
Cdd:MTH00209  193 PFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSS--PFFSMSLLLLGSLTTLMASMSANVESDLKKIIALS 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 310 SVSHMG--FIILGIGSIsdtglNGAILQIISHGFIGAALFFLAGTS-YDRLRLLYLDEMGGMAIPMPKIFTIFTILSMAS 386
Cdd:MTH00209  271 TLSQLGlmMCSLGLNQP-----ELAFFHLITHALFKALLFICAGNIiHSHGHSQDIRMVGNLWYQMPITSICLNIANLSL 345

                  ....*....
gi 1678641913 387 LALPGMSGF 395
Cdd:MTH00209  346 CGIPFLAGF 354
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
217-397 1.63e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.84  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 217 AFLIAFAV--KSPIIPLHTWLPDTHgEAHYSTCMLLAGILLKMGAYGLVRInMELFSHAHSifCPW-LMILGSIQIIYAA 293
Cdd:PRK08168  203 ALLLVLAVilKTAQLPVHGWLIQVM-EAPTPVSALLHAGVVNLGGFVLIRF-APLLEQAPP--ARWlLVLVGLATAVLAG 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 294 STSFGQRNLKKRIAYSSVSHMGFIILGIGsisdTGLNG-AILQIISHGFIGAALFFLAGTSYDRLRLLyldEMGGMAIPM 372
Cdd:PRK08168  279 LVMLTRISIKVRLAWSTVAQMGFMLLECG----LGLYElALLHLVAHSLYKAHAFLSASEAVRDTRLR---RLQGPQSAA 351
                         170       180
                  ....*....|....*....|....*.
gi 1678641913 373 PKIFTIFT-ILSMASLALPGMSGFVA 397
Cdd:PRK08168  352 GVVSLLLApLLSAALVLLLQSLLPLG 377
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
117-486 6.35e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 38.76  E-value: 6.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 117 FLMLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGILgiglygsneptL 196
Cdd:MTH00041    8 FLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGAL-----------I 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 197 NFETLTNQSYPVALEILLYTAFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAhsi 276
Cdd:MTH00041   77 QAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNI--- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 277 fcpwLMILGSIQIIYAASTSFGQRNLKKRIAYSSVSHMGFIIlgigSISDTGLNGAILQIISHGFIGAALFFLAgtsyDR 356
Cdd:MTH00041  154 ----LILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWII----ITSAYSPNASIIMFLIYIIINTSIFLIG----NN 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678641913 357 LRLLYLDEMGGMAIPMPkIFTIFTILSMASLA-LPGMSGFVAELIVFFGIITSQKYLFmmkilitfvTAIGMILTPIYLL 435
Cdd:MTH00041  222 FSLSTLSHLNKLSQLNP-ISAFLFILSILSLGgLPPLTGFLNKFISLYCLIQNNSILI---------SIILIIGSLLSLF 291
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1678641913 436 SILRQMFYGYKFFNTPNAYFFDS-------GPRELFISISILIPVIGIGIYPDFIFSF 486
Cdd:MTH00041  292 FYLRISFNTSLTLFPQHSISLFSwrnsgniTVYGVILSILSSISILGLLLIPLFLSFL 349
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH